Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0830

Experiment: Nitrite/ lactate media with Nitrite 20mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0828 and Psest_0829 are separated by 401 nucleotidesPsest_0829 and Psest_0830 are separated by 67 nucleotidesPsest_0830 and Psest_0831 are separated by 136 nucleotidesPsest_0831 and Psest_0832 overlap by 4 nucleotides Psest_0828: Psest_0828 - Nitric oxide reductase activation protein, at 899,570 to 901,411 _0828 Psest_0829: Psest_0829 - hypothetical protein, at 901,813 to 902,004 _0829 Psest_0830: Psest_0830 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 902,072 to 902,755 _0830 Psest_0831: Psest_0831 - hypothetical protein, at 902,892 to 903,410 _0831 Psest_0832: Psest_0832 - iron-sulfur cluster repair di-iron protein, at 903,407 to 904,126 _0832 Position (kb) 902 903Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 901.085 kb on + strand, within Psest_0828at 901.086 kb on - strand, within Psest_0828at 901.088 kb on + strand, within Psest_0828at 901.088 kb on + strand, within Psest_0828at 901.088 kb on + strand, within Psest_0828at 901.089 kb on - strand, within Psest_0828at 901.089 kb on - strand, within Psest_0828at 901.089 kb on - strand, within Psest_0828at 901.089 kb on - strand, within Psest_0828at 901.089 kb on - strand, within Psest_0828at 901.089 kb on - strand, within Psest_0828at 901.203 kb on - strand, within Psest_0828at 901.203 kb on - strand, within Psest_0828at 901.316 kb on + strandat 901.316 kb on + strandat 901.316 kb on + strandat 901.316 kb on + strandat 901.316 kb on + strandat 901.388 kb on + strandat 901.388 kb on + strandat 901.409 kb on + strandat 901.510 kb on - strandat 901.549 kb on + strandat 901.550 kb on - strandat 901.569 kb on + strandat 901.569 kb on + strandat 901.569 kb on + strandat 901.569 kb on + strandat 901.569 kb on + strandat 901.569 kb on + strandat 901.569 kb on + strandat 901.569 kb on + strandat 901.569 kb on + strandat 901.570 kb on - strandat 901.570 kb on - strandat 901.570 kb on - strandat 901.570 kb on - strandat 901.570 kb on - strandat 901.570 kb on - strandat 901.570 kb on - strandat 901.592 kb on + strandat 901.592 kb on + strandat 901.592 kb on + strandat 901.592 kb on + strandat 901.592 kb on + strandat 901.592 kb on + strandat 901.593 kb on - strandat 901.593 kb on - strandat 901.593 kb on - strandat 901.593 kb on - strandat 901.593 kb on - strandat 901.686 kb on - strandat 901.686 kb on - strandat 901.720 kb on - strandat 901.793 kb on - strandat 901.823 kb on + strandat 901.824 kb on - strandat 901.824 kb on - strandat 901.824 kb on - strandat 902.131 kb on + strandat 902.132 kb on - strandat 902.273 kb on + strand, within Psest_0830at 902.273 kb on + strand, within Psest_0830at 902.273 kb on + strand, within Psest_0830at 902.273 kb on + strand, within Psest_0830at 902.274 kb on - strand, within Psest_0830at 902.278 kb on - strand, within Psest_0830at 902.409 kb on + strand, within Psest_0830at 902.409 kb on + strand, within Psest_0830at 902.409 kb on + strand, within Psest_0830at 902.409 kb on + strand, within Psest_0830at 902.410 kb on - strand, within Psest_0830at 902.410 kb on - strand, within Psest_0830at 902.410 kb on - strand, within Psest_0830at 902.430 kb on + strand, within Psest_0830at 902.431 kb on - strand, within Psest_0830at 902.469 kb on + strand, within Psest_0830at 902.469 kb on + strand, within Psest_0830at 902.469 kb on + strand, within Psest_0830at 902.469 kb on + strand, within Psest_0830at 902.469 kb on + strand, within Psest_0830at 902.470 kb on - strand, within Psest_0830at 902.470 kb on - strand, within Psest_0830at 902.470 kb on - strand, within Psest_0830at 902.470 kb on - strand, within Psest_0830at 902.470 kb on - strand, within Psest_0830at 902.566 kb on - strand, within Psest_0830at 902.595 kb on + strand, within Psest_0830at 902.595 kb on + strand, within Psest_0830at 902.595 kb on + strand, within Psest_0830at 902.595 kb on + strand, within Psest_0830at 902.595 kb on + strand, within Psest_0830at 902.596 kb on - strand, within Psest_0830at 902.596 kb on - strand, within Psest_0830at 902.596 kb on - strand, within Psest_0830at 902.596 kb on - strand, within Psest_0830at 902.596 kb on - strand, within Psest_0830at 902.739 kb on - strandat 902.809 kb on - strandat 902.878 kb on - strandat 903.098 kb on - strand, within Psest_0831at 903.400 kb on + strandat 903.400 kb on + strandat 903.400 kb on + strandat 903.485 kb on + strand, within Psest_0832at 903.485 kb on + strand, within Psest_0832at 903.485 kb on + strand, within Psest_0832at 903.485 kb on + strand, within Psest_0832at 903.485 kb on + strand, within Psest_0832at 903.485 kb on + strand, within Psest_0832at 903.486 kb on - strand, within Psest_0832at 903.486 kb on - strand, within Psest_0832at 903.486 kb on - strand, within Psest_0832at 903.486 kb on - strand, within Psest_0832at 903.486 kb on - strand, within Psest_0832at 903.486 kb on - strand, within Psest_0832at 903.486 kb on - strand, within Psest_0832at 903.486 kb on - strand, within Psest_0832at 903.486 kb on - strand, within Psest_0832at 903.486 kb on - strand, within Psest_0832at 903.486 kb on - strand, within Psest_0832at 903.486 kb on - strand, within Psest_0832at 903.486 kb on - strand, within Psest_0832at 903.486 kb on - strand, within Psest_0832at 903.562 kb on + strand, within Psest_0832at 903.562 kb on + strand, within Psest_0832at 903.562 kb on + strand, within Psest_0832at 903.586 kb on + strand, within Psest_0832at 903.645 kb on + strand, within Psest_0832

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrite/ lactate media with Nitrite 20mM
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901,085 + Psest_0828 0.82 -2.3
901,086 - Psest_0828 0.82 -0.9
901,088 + Psest_0828 0.82 -1.4
901,088 + Psest_0828 0.82 -2.3
901,088 + Psest_0828 0.82 -1.1
901,089 - Psest_0828 0.82 -2.2
901,089 - Psest_0828 0.82 -0.7
901,089 - Psest_0828 0.82 -1.9
901,089 - Psest_0828 0.82 +0.9
901,089 - Psest_0828 0.82 -1.1
901,089 - Psest_0828 0.82 -3.1
901,203 - Psest_0828 0.89 +0.6
901,203 - Psest_0828 0.89 -0.4
901,316 + +0.9
901,316 + +0.3
901,316 + -0.9
901,316 + -0.7
901,316 + -0.5
901,388 + -2.9
901,388 + -2.7
901,409 + -0.6
901,510 - +0.6
901,549 + +1.3
901,550 - -1.1
901,569 + -2.2
901,569 + -0.2
901,569 + +0.5
901,569 + +0.2
901,569 + -0.4
901,569 + -2.0
901,569 + -0.5
901,569 + +0.3
901,569 + -0.1
901,570 - +0.4
901,570 - -0.8
901,570 - -0.1
901,570 - -1.0
901,570 - +0.2
901,570 - +0.3
901,570 - -1.1
901,592 + +0.9
901,592 + -1.1
901,592 + -0.6
901,592 + -1.0
901,592 + -0.4
901,592 + -0.2
901,593 - +1.2
901,593 - +1.9
901,593 - -0.4
901,593 - -0.4
901,593 - -0.1
901,686 - +0.9
901,686 - -0.1
901,720 - -1.9
901,793 - +0.0
901,823 + -1.8
901,824 - +0.9
901,824 - +0.3
901,824 - -0.7
902,131 + -0.1
902,132 - -0.7
902,273 + Psest_0830 0.29 -0.7
902,273 + Psest_0830 0.29 -1.5
902,273 + Psest_0830 0.29 -1.1
902,273 + Psest_0830 0.29 +0.2
902,274 - Psest_0830 0.30 -0.9
902,278 - Psest_0830 0.30 -2.5
902,409 + Psest_0830 0.49 -0.1
902,409 + Psest_0830 0.49 -1.8
902,409 + Psest_0830 0.49 -2.8
902,409 + Psest_0830 0.49 -2.2
902,410 - Psest_0830 0.49 -0.1
902,410 - Psest_0830 0.49 -1.1
902,410 - Psest_0830 0.49 -0.1
902,430 + Psest_0830 0.52 -2.4
902,431 - Psest_0830 0.52 +0.3
902,469 + Psest_0830 0.58 -2.1
902,469 + Psest_0830 0.58 -3.5
902,469 + Psest_0830 0.58 +1.9
902,469 + Psest_0830 0.58 -0.1
902,469 + Psest_0830 0.58 -1.1
902,470 - Psest_0830 0.58 -0.7
902,470 - Psest_0830 0.58 -2.4
902,470 - Psest_0830 0.58 +0.9
902,470 - Psest_0830 0.58 -2.1
902,470 - Psest_0830 0.58 -1.7
902,566 - Psest_0830 0.72 -1.5
902,595 + Psest_0830 0.76 -0.7
902,595 + Psest_0830 0.76 +1.9
902,595 + Psest_0830 0.76 -0.9
902,595 + Psest_0830 0.76 -1.5
902,595 + Psest_0830 0.76 -1.8
902,596 - Psest_0830 0.77 -0.9
902,596 - Psest_0830 0.77 -3.6
902,596 - Psest_0830 0.77 +0.9
902,596 - Psest_0830 0.77 -2.6
902,596 - Psest_0830 0.77 -1.1
902,739 - +0.3
902,809 - -0.1
902,878 - +0.2
903,098 - Psest_0831 0.40 +0.2
903,400 + -0.1
903,400 + -1.4
903,400 + -0.8
903,485 + Psest_0832 0.11 +1.9
903,485 + Psest_0832 0.11 -1.1
903,485 + Psest_0832 0.11 -2.1
903,485 + Psest_0832 0.11 +0.1
903,485 + Psest_0832 0.11 -1.1
903,485 + Psest_0832 0.11 -1.0
903,486 - Psest_0832 0.11 +1.9
903,486 - Psest_0832 0.11 +0.4
903,486 - Psest_0832 0.11 -1.5
903,486 - Psest_0832 0.11 +1.3
903,486 - Psest_0832 0.11 +0.2
903,486 - Psest_0832 0.11 -1.5
903,486 - Psest_0832 0.11 -0.1
903,486 - Psest_0832 0.11 -0.4
903,486 - Psest_0832 0.11 -3.2
903,486 - Psest_0832 0.11 +0.4
903,486 - Psest_0832 0.11 -0.5
903,486 - Psest_0832 0.11 +1.2
903,486 - Psest_0832 0.11 +0.9
903,486 - Psest_0832 0.11 -0.4
903,562 + Psest_0832 0.22 -1.5
903,562 + Psest_0832 0.22 +1.2
903,562 + Psest_0832 0.22 -0.9
903,586 + Psest_0832 0.25 -0.1
903,645 + Psest_0832 0.33 -2.9

Or see this region's nucleotide sequence