Experiment: Nitrite/ lactate media with Nitrite 20mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0817 and Psest_0818 are separated by 24 nucleotides Psest_0818 and Psest_0819 are separated by 146 nucleotides Psest_0819 and Psest_0820 are separated by 18 nucleotides Psest_0820 and Psest_0821 overlap by 4 nucleotides Psest_0821 and Psest_0822 are separated by 1 nucleotides Psest_0822 and Psest_0823 overlap by 4 nucleotides Psest_0823 and Psest_0824 overlap by 8 nucleotides
Psest_0817: Psest_0817 - Ethylbenzene dehydrogenase., at 892,400 to 893,275
_0817
Psest_0818: Psest_0818 - hypothetical protein, at 893,300 to 893,446
_0818
Psest_0819: Psest_0819 - Cytochrome c551/c552, at 893,593 to 893,907
_0819
Psest_0820: Psest_0820 - hypothetical protein, at 893,926 to 894,267
_0820
Psest_0821: Psest_0821 - Cytochrome D1 heme domain., at 894,264 to 895,439
_0821
Psest_0822: Psest_0822 - Transcriptional regulators, at 895,441 to 895,899
_0822
Psest_0823: Psest_0823 - Transcriptional regulators, at 895,896 to 896,408
_0823
Psest_0824: Psest_0824 - Transcriptional regulators, at 896,401 to 896,844
_0824
Position (kb) 894
895
896 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 893.392 kb on - strand, within Psest_0818 at 893.585 kb on + strand at 893.585 kb on + strand at 893.585 kb on + strand at 893.585 kb on + strand at 893.585 kb on + strand at 893.586 kb on - strand at 893.586 kb on - strand at 893.591 kb on + strand at 893.591 kb on + strand at 893.591 kb on + strand at 893.591 kb on + strand at 893.591 kb on + strand at 893.592 kb on - strand at 893.592 kb on - strand at 893.592 kb on - strand at 893.905 kb on + strand at 893.905 kb on + strand at 893.905 kb on + strand at 893.905 kb on + strand at 893.905 kb on + strand at 893.905 kb on + strand at 893.906 kb on - strand at 893.906 kb on - strand at 893.906 kb on - strand at 893.906 kb on - strand at 893.906 kb on - strand at 893.906 kb on - strand at 893.906 kb on - strand at 894.047 kb on + strand, within Psest_0820 at 894.047 kb on + strand, within Psest_0820 at 894.047 kb on + strand, within Psest_0820 at 894.048 kb on - strand, within Psest_0820 at 894.048 kb on - strand, within Psest_0820 at 894.048 kb on - strand, within Psest_0820 at 894.048 kb on - strand, within Psest_0820 at 894.048 kb on - strand, within Psest_0820 at 894.483 kb on + strand, within Psest_0821 at 894.483 kb on + strand, within Psest_0821 at 894.483 kb on + strand, within Psest_0821 at 894.483 kb on + strand, within Psest_0821 at 894.484 kb on - strand, within Psest_0821 at 894.618 kb on + strand, within Psest_0821 at 894.618 kb on + strand, within Psest_0821 at 894.619 kb on - strand, within Psest_0821 at 894.619 kb on - strand, within Psest_0821 at 894.654 kb on - strand, within Psest_0821 at 894.756 kb on + strand, within Psest_0821 at 894.756 kb on + strand, within Psest_0821 at 894.756 kb on + strand, within Psest_0821 at 894.756 kb on + strand, within Psest_0821 at 894.756 kb on + strand, within Psest_0821 at 894.756 kb on + strand, within Psest_0821 at 894.757 kb on - strand, within Psest_0821 at 894.757 kb on - strand, within Psest_0821 at 894.757 kb on - strand, within Psest_0821 at 894.757 kb on - strand, within Psest_0821 at 894.852 kb on + strand, within Psest_0821 at 894.885 kb on + strand, within Psest_0821 at 894.885 kb on + strand, within Psest_0821 at 894.885 kb on + strand, within Psest_0821 at 894.885 kb on + strand, within Psest_0821 at 894.885 kb on + strand, within Psest_0821 at 894.885 kb on + strand, within Psest_0821 at 894.885 kb on + strand, within Psest_0821 at 894.886 kb on - strand, within Psest_0821 at 894.886 kb on - strand, within Psest_0821 at 894.886 kb on - strand, within Psest_0821 at 894.886 kb on - strand, within Psest_0821 at 894.886 kb on - strand, within Psest_0821 at 894.886 kb on - strand, within Psest_0821 at 894.886 kb on - strand, within Psest_0821 at 894.886 kb on - strand, within Psest_0821 at 894.886 kb on - strand, within Psest_0821 at 894.886 kb on - strand, within Psest_0821 at 894.886 kb on - strand, within Psest_0821 at 895.002 kb on + strand, within Psest_0821 at 895.002 kb on + strand, within Psest_0821 at 895.210 kb on + strand, within Psest_0821 at 895.211 kb on - strand, within Psest_0821 at 895.211 kb on - strand, within Psest_0821 at 895.353 kb on + strand at 895.354 kb on - strand at 895.447 kb on - strand at 895.726 kb on + strand, within Psest_0822 at 895.726 kb on + strand, within Psest_0822 at 895.726 kb on + strand, within Psest_0822 at 895.726 kb on + strand, within Psest_0822 at 895.726 kb on + strand, within Psest_0822 at 895.726 kb on + strand, within Psest_0822 at 895.727 kb on - strand, within Psest_0822 at 895.744 kb on + strand, within Psest_0822 at 895.745 kb on - strand, within Psest_0822 at 896.155 kb on + strand, within Psest_0823 at 896.156 kb on - strand, within Psest_0823 at 896.196 kb on + strand, within Psest_0823 at 896.197 kb on - strand, within Psest_0823 at 896.229 kb on + strand, within Psest_0823 at 896.229 kb on + strand, within Psest_0823 at 896.230 kb on - strand, within Psest_0823 at 896.230 kb on - strand, within Psest_0823
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrite/ lactate media with Nitrite 20mM remove 893,392 - Psest_0818 0.63 +0.9 893,585 + -2.5 893,585 + +1.9 893,585 + -0.9 893,585 + +0.9 893,585 + -1.9 893,586 - -3.1 893,586 - -3.1 893,591 + -2.6 893,591 + -1.4 893,591 + -0.9 893,591 + -2.3 893,591 + -2.9 893,592 - -1.5 893,592 - -0.9 893,592 - -1.2 893,905 + -1.3 893,905 + -1.4 893,905 + -0.1 893,905 + -1.6 893,905 + -1.1 893,905 + +0.4 893,906 - -0.2 893,906 - +0.4 893,906 - -3.2 893,906 - -1.4 893,906 - -0.9 893,906 - -2.8 893,906 - -2.3 894,047 + Psest_0820 0.35 -1.1 894,047 + Psest_0820 0.35 -1.4 894,047 + Psest_0820 0.35 +0.9 894,048 - Psest_0820 0.36 -2.3 894,048 - Psest_0820 0.36 -1.2 894,048 - Psest_0820 0.36 -0.1 894,048 - Psest_0820 0.36 -1.6 894,048 - Psest_0820 0.36 -3.0 894,483 + Psest_0821 0.19 +0.4 894,483 + Psest_0821 0.19 -2.3 894,483 + Psest_0821 0.19 -0.3 894,483 + Psest_0821 0.19 -1.2 894,484 - Psest_0821 0.19 -1.8 894,618 + Psest_0821 0.30 -1.5 894,618 + Psest_0821 0.30 -2.6 894,619 - Psest_0821 0.30 -0.6 894,619 - Psest_0821 0.30 -0.9 894,654 - Psest_0821 0.33 -0.1 894,756 + Psest_0821 0.42 -1.2 894,756 + Psest_0821 0.42 -2.5 894,756 + Psest_0821 0.42 -0.1 894,756 + Psest_0821 0.42 +0.4 894,756 + Psest_0821 0.42 -2.1 894,756 + Psest_0821 0.42 -1.8 894,757 - Psest_0821 0.42 -0.4 894,757 - Psest_0821 0.42 -1.5 894,757 - Psest_0821 0.42 -1.8 894,757 - Psest_0821 0.42 -1.5 894,852 + Psest_0821 0.50 -0.2 894,885 + Psest_0821 0.53 -3.0 894,885 + Psest_0821 0.53 -2.4 894,885 + Psest_0821 0.53 -3.4 894,885 + Psest_0821 0.53 -1.4 894,885 + Psest_0821 0.53 -0.7 894,885 + Psest_0821 0.53 -2.2 894,885 + Psest_0821 0.53 -1.5 894,886 - Psest_0821 0.53 -0.4 894,886 - Psest_0821 0.53 -0.4 894,886 - Psest_0821 0.53 -2.8 894,886 - Psest_0821 0.53 -1.1 894,886 - Psest_0821 0.53 -2.5 894,886 - Psest_0821 0.53 -1.2 894,886 - Psest_0821 0.53 +0.9 894,886 - Psest_0821 0.53 -1.9 894,886 - Psest_0821 0.53 +0.9 894,886 - Psest_0821 0.53 -0.1 894,886 - Psest_0821 0.53 -1.8 895,002 + Psest_0821 0.63 -1.1 895,002 + Psest_0821 0.63 -1.2 895,210 + Psest_0821 0.80 -1.5 895,211 - Psest_0821 0.81 -1.3 895,211 - Psest_0821 0.81 -2.0 895,353 + +1.9 895,354 - +0.4 895,447 - -0.4 895,726 + Psest_0822 0.62 +1.9 895,726 + Psest_0822 0.62 -0.8 895,726 + Psest_0822 0.62 -0.9 895,726 + Psest_0822 0.62 -1.4 895,726 + Psest_0822 0.62 +0.1 895,726 + Psest_0822 0.62 -0.6 895,727 - Psest_0822 0.62 +0.4 895,744 + Psest_0822 0.66 -3.0 895,745 - Psest_0822 0.66 -1.5 896,155 + Psest_0823 0.50 -1.8 896,156 - Psest_0823 0.51 -1.6 896,196 + Psest_0823 0.58 -0.8 896,197 - Psest_0823 0.59 -2.0 896,229 + Psest_0823 0.65 -0.9 896,229 + Psest_0823 0.65 -1.0 896,230 - Psest_0823 0.65 -0.9 896,230 - Psest_0823 0.65 -0.4
Or see this region's nucleotide sequence