Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1787

Experiment: Nitrate/ lactate media with Nitrate 250mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1784 and Psest_1785 are separated by 13 nucleotidesPsest_1785 and Psest_1786 are separated by 82 nucleotidesPsest_1786 and Psest_1787 overlap by 4 nucleotidesPsest_1787 and Psest_1788 overlap by 4 nucleotides Psest_1784: Psest_1784 - Predicted transporter component, at 1,879,598 to 1,880,017 _1784 Psest_1785: Psest_1785 - Protein of unknown function (DUF2892)., at 1,880,031 to 1,880,228 _1785 Psest_1786: Psest_1786 - Rhodanese-related sulfurtransferase, at 1,880,311 to 1,880,691 _1786 Psest_1787: Psest_1787 - high affinity sulphate transporter 1, at 1,880,688 to 1,882,466 _1787 Psest_1788: Psest_1788 - TIGR01244 family protein, at 1,882,463 to 1,884,211 _1788 Position (kb) 1880 1881 1882 1883Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1880.065 kb on + strand, within Psest_1785at 1880.065 kb on + strand, within Psest_1785at 1880.065 kb on + strand, within Psest_1785at 1880.065 kb on + strand, within Psest_1785at 1880.065 kb on + strand, within Psest_1785at 1880.065 kb on + strand, within Psest_1785at 1880.065 kb on + strand, within Psest_1785at 1880.066 kb on - strand, within Psest_1785at 1880.066 kb on - strand, within Psest_1785at 1880.066 kb on - strand, within Psest_1785at 1880.066 kb on - strand, within Psest_1785at 1880.066 kb on - strand, within Psest_1785at 1880.066 kb on - strand, within Psest_1785at 1880.066 kb on - strand, within Psest_1785at 1880.069 kb on + strand, within Psest_1785at 1880.069 kb on + strand, within Psest_1785at 1880.070 kb on - strand, within Psest_1785at 1880.181 kb on + strand, within Psest_1785at 1880.183 kb on + strand, within Psest_1785at 1880.183 kb on + strand, within Psest_1785at 1880.183 kb on + strand, within Psest_1785at 1880.183 kb on + strand, within Psest_1785at 1880.183 kb on + strand, within Psest_1785at 1880.184 kb on - strand, within Psest_1785at 1880.184 kb on - strand, within Psest_1785at 1880.238 kb on + strandat 1880.238 kb on + strandat 1880.239 kb on - strandat 1880.239 kb on - strandat 1880.239 kb on - strandat 1880.391 kb on + strand, within Psest_1786at 1880.403 kb on - strand, within Psest_1786at 1880.416 kb on + strand, within Psest_1786at 1880.459 kb on + strand, within Psest_1786at 1880.460 kb on - strand, within Psest_1786at 1880.460 kb on - strand, within Psest_1786at 1880.554 kb on - strand, within Psest_1786at 1880.593 kb on - strand, within Psest_1786at 1880.593 kb on - strand, within Psest_1786at 1880.596 kb on + strand, within Psest_1786at 1880.596 kb on + strand, within Psest_1786at 1880.596 kb on + strand, within Psest_1786at 1880.596 kb on + strand, within Psest_1786at 1880.597 kb on - strand, within Psest_1786at 1880.597 kb on - strand, within Psest_1786at 1880.597 kb on - strand, within Psest_1786at 1880.597 kb on - strand, within Psest_1786at 1880.597 kb on - strand, within Psest_1786at 1880.597 kb on - strand, within Psest_1786at 1880.597 kb on - strand, within Psest_1786at 1880.671 kb on + strandat 1880.950 kb on - strand, within Psest_1787at 1880.989 kb on + strand, within Psest_1787at 1881.044 kb on - strand, within Psest_1787at 1881.044 kb on - strand, within Psest_1787at 1881.284 kb on - strand, within Psest_1787at 1881.284 kb on - strand, within Psest_1787at 1881.372 kb on - strand, within Psest_1787at 1881.396 kb on + strand, within Psest_1787at 1881.732 kb on + strand, within Psest_1787at 1881.732 kb on + strand, within Psest_1787at 1881.732 kb on + strand, within Psest_1787at 1881.732 kb on + strand, within Psest_1787at 1881.733 kb on - strand, within Psest_1787at 1881.733 kb on - strand, within Psest_1787at 1881.733 kb on - strand, within Psest_1787at 1881.801 kb on + strand, within Psest_1787at 1881.801 kb on + strand, within Psest_1787at 1881.881 kb on - strand, within Psest_1787at 1881.900 kb on + strand, within Psest_1787at 1882.162 kb on + strand, within Psest_1787at 1882.162 kb on + strand, within Psest_1787at 1882.162 kb on + strand, within Psest_1787at 1882.162 kb on + strand, within Psest_1787at 1882.163 kb on - strand, within Psest_1787at 1882.268 kb on + strand, within Psest_1787at 1882.270 kb on + strand, within Psest_1787at 1882.270 kb on + strand, within Psest_1787at 1882.298 kb on - strandat 1882.414 kb on + strandat 1882.414 kb on + strandat 1882.581 kb on + strandat 1882.581 kb on + strandat 1882.582 kb on - strandat 1882.582 kb on - strandat 1882.740 kb on + strand, within Psest_1788at 1882.740 kb on + strand, within Psest_1788at 1882.740 kb on + strand, within Psest_1788at 1882.741 kb on - strand, within Psest_1788at 1882.741 kb on - strand, within Psest_1788at 1882.741 kb on - strand, within Psest_1788at 1882.741 kb on - strand, within Psest_1788at 1882.741 kb on - strand, within Psest_1788at 1882.940 kb on - strand, within Psest_1788at 1883.118 kb on + strand, within Psest_1788at 1883.118 kb on + strand, within Psest_1788at 1883.118 kb on + strand, within Psest_1788at 1883.119 kb on - strand, within Psest_1788at 1883.119 kb on - strand, within Psest_1788at 1883.119 kb on - strand, within Psest_1788at 1883.119 kb on - strand, within Psest_1788at 1883.119 kb on - strand, within Psest_1788at 1883.119 kb on - strand, within Psest_1788at 1883.235 kb on + strand, within Psest_1788at 1883.235 kb on + strand, within Psest_1788at 1883.235 kb on + strand, within Psest_1788at 1883.235 kb on + strand, within Psest_1788at 1883.235 kb on + strand, within Psest_1788at 1883.235 kb on + strand, within Psest_1788at 1883.235 kb on + strand, within Psest_1788at 1883.235 kb on + strand, within Psest_1788at 1883.235 kb on + strand, within Psest_1788at 1883.235 kb on + strand, within Psest_1788at 1883.235 kb on + strand, within Psest_1788at 1883.236 kb on - strand, within Psest_1788at 1883.236 kb on - strand, within Psest_1788at 1883.236 kb on - strand, within Psest_1788at 1883.236 kb on - strand, within Psest_1788at 1883.236 kb on - strand, within Psest_1788at 1883.236 kb on - strand, within Psest_1788at 1883.236 kb on - strand, within Psest_1788at 1883.236 kb on - strand, within Psest_1788at 1883.236 kb on - strand, within Psest_1788at 1883.236 kb on - strand, within Psest_1788at 1883.236 kb on - strand, within Psest_1788at 1883.236 kb on - strand, within Psest_1788at 1883.236 kb on - strand, within Psest_1788at 1883.236 kb on - strand, within Psest_1788at 1883.236 kb on - strand, within Psest_1788at 1883.236 kb on - strand, within Psest_1788at 1883.236 kb on - strand, within Psest_1788at 1883.236 kb on - strand, within Psest_1788at 1883.236 kb on - strand, within Psest_1788at 1883.236 kb on - strand, within Psest_1788at 1883.334 kb on + strand, within Psest_1788at 1883.335 kb on - strand, within Psest_1788at 1883.335 kb on - strand, within Psest_1788at 1883.335 kb on - strand, within Psest_1788at 1883.355 kb on + strand, within Psest_1788at 1883.356 kb on - strand, within Psest_1788at 1883.377 kb on + strand, within Psest_1788

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate/ lactate media with Nitrate 250mM
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1,880,065 + Psest_1785 0.17 +1.9
1,880,065 + Psest_1785 0.17 +0.7
1,880,065 + Psest_1785 0.17 -0.1
1,880,065 + Psest_1785 0.17 -1.3
1,880,065 + Psest_1785 0.17 +0.1
1,880,065 + Psest_1785 0.17 -0.6
1,880,065 + Psest_1785 0.17 -0.6
1,880,066 - Psest_1785 0.18 +0.1
1,880,066 - Psest_1785 0.18 -0.0
1,880,066 - Psest_1785 0.18 -0.5
1,880,066 - Psest_1785 0.18 +0.2
1,880,066 - Psest_1785 0.18 -0.6
1,880,066 - Psest_1785 0.18 -0.7
1,880,066 - Psest_1785 0.18 +0.3
1,880,069 + Psest_1785 0.19 +0.1
1,880,069 + Psest_1785 0.19 -0.9
1,880,070 - Psest_1785 0.20 -0.1
1,880,181 + Psest_1785 0.76 -0.4
1,880,183 + Psest_1785 0.77 -0.5
1,880,183 + Psest_1785 0.77 -1.0
1,880,183 + Psest_1785 0.77 -0.5
1,880,183 + Psest_1785 0.77 -1.1
1,880,183 + Psest_1785 0.77 +0.3
1,880,184 - Psest_1785 0.77 +0.1
1,880,184 - Psest_1785 0.77 +0.3
1,880,238 + -0.6
1,880,238 + +1.5
1,880,239 - -0.5
1,880,239 - +0.9
1,880,239 - -0.5
1,880,391 + Psest_1786 0.21 +0.1
1,880,403 - Psest_1786 0.24 -1.1
1,880,416 + Psest_1786 0.28 -0.5
1,880,459 + Psest_1786 0.39 +0.2
1,880,460 - Psest_1786 0.39 -0.9
1,880,460 - Psest_1786 0.39 -0.6
1,880,554 - Psest_1786 0.64 -0.7
1,880,593 - Psest_1786 0.74 -0.1
1,880,593 - Psest_1786 0.74 -1.9
1,880,596 + Psest_1786 0.75 +0.7
1,880,596 + Psest_1786 0.75 +0.9
1,880,596 + Psest_1786 0.75 +1.5
1,880,596 + Psest_1786 0.75 -0.4
1,880,597 - Psest_1786 0.75 -0.0
1,880,597 - Psest_1786 0.75 -0.6
1,880,597 - Psest_1786 0.75 +1.9
1,880,597 - Psest_1786 0.75 -0.8
1,880,597 - Psest_1786 0.75 +0.6
1,880,597 - Psest_1786 0.75 -0.6
1,880,597 - Psest_1786 0.75 -0.0
1,880,671 + +0.9
1,880,950 - Psest_1787 0.15 -0.9
1,880,989 + Psest_1787 0.17 -0.5
1,881,044 - Psest_1787 0.20 +0.5
1,881,044 - Psest_1787 0.20 +0.1
1,881,284 - Psest_1787 0.34 -0.5
1,881,284 - Psest_1787 0.34 -1.5
1,881,372 - Psest_1787 0.38 -0.3
1,881,396 + Psest_1787 0.40 -1.7
1,881,732 + Psest_1787 0.59 -0.2
1,881,732 + Psest_1787 0.59 +1.5
1,881,732 + Psest_1787 0.59 -0.6
1,881,732 + Psest_1787 0.59 +0.1
1,881,733 - Psest_1787 0.59 -0.6
1,881,733 - Psest_1787 0.59 -0.5
1,881,733 - Psest_1787 0.59 -2.1
1,881,801 + Psest_1787 0.63 -1.4
1,881,801 + Psest_1787 0.63 -0.9
1,881,881 - Psest_1787 0.67 -0.6
1,881,900 + Psest_1787 0.68 -1.1
1,882,162 + Psest_1787 0.83 -0.8
1,882,162 + Psest_1787 0.83 +0.5
1,882,162 + Psest_1787 0.83 -0.1
1,882,162 + Psest_1787 0.83 +0.6
1,882,163 - Psest_1787 0.83 -1.0
1,882,268 + Psest_1787 0.89 -0.1
1,882,270 + Psest_1787 0.89 +1.5
1,882,270 + Psest_1787 0.89 -0.1
1,882,298 - -1.1
1,882,414 + -0.5
1,882,414 + +1.3
1,882,581 + +1.9
1,882,581 + +0.1
1,882,582 - -0.1
1,882,582 - -0.2
1,882,740 + Psest_1788 0.16 -0.7
1,882,740 + Psest_1788 0.16 -0.5
1,882,740 + Psest_1788 0.16 +0.8
1,882,741 - Psest_1788 0.16 +0.7
1,882,741 - Psest_1788 0.16 -0.7
1,882,741 - Psest_1788 0.16 +1.9
1,882,741 - Psest_1788 0.16 -0.5
1,882,741 - Psest_1788 0.16 -1.4
1,882,940 - Psest_1788 0.27 +0.3
1,883,118 + Psest_1788 0.37 -0.8
1,883,118 + Psest_1788 0.37 -0.1
1,883,118 + Psest_1788 0.37 -0.5
1,883,119 - Psest_1788 0.38 -2.0
1,883,119 - Psest_1788 0.38 +0.3
1,883,119 - Psest_1788 0.38 +1.3
1,883,119 - Psest_1788 0.38 -0.6
1,883,119 - Psest_1788 0.38 -0.7
1,883,119 - Psest_1788 0.38 +2.9
1,883,235 + Psest_1788 0.44 -0.7
1,883,235 + Psest_1788 0.44 +0.5
1,883,235 + Psest_1788 0.44 +0.5
1,883,235 + Psest_1788 0.44 +0.9
1,883,235 + Psest_1788 0.44 -0.8
1,883,235 + Psest_1788 0.44 -1.7
1,883,235 + Psest_1788 0.44 +1.5
1,883,235 + Psest_1788 0.44 -0.0
1,883,235 + Psest_1788 0.44 -0.7
1,883,235 + Psest_1788 0.44 -1.1
1,883,235 + Psest_1788 0.44 -0.9
1,883,236 - Psest_1788 0.44 -1.5
1,883,236 - Psest_1788 0.44 -0.3
1,883,236 - Psest_1788 0.44 +0.5
1,883,236 - Psest_1788 0.44 +0.1
1,883,236 - Psest_1788 0.44 -0.5
1,883,236 - Psest_1788 0.44 +1.2
1,883,236 - Psest_1788 0.44 -0.1
1,883,236 - Psest_1788 0.44 -0.6
1,883,236 - Psest_1788 0.44 +1.9
1,883,236 - Psest_1788 0.44 -0.7
1,883,236 - Psest_1788 0.44 +1.9
1,883,236 - Psest_1788 0.44 -0.1
1,883,236 - Psest_1788 0.44 -0.8
1,883,236 - Psest_1788 0.44 +1.1
1,883,236 - Psest_1788 0.44 +0.1
1,883,236 - Psest_1788 0.44 -0.4
1,883,236 - Psest_1788 0.44 -0.7
1,883,236 - Psest_1788 0.44 +0.6
1,883,236 - Psest_1788 0.44 -0.5
1,883,236 - Psest_1788 0.44 -1.0
1,883,334 + Psest_1788 0.50 -0.3
1,883,335 - Psest_1788 0.50 +0.2
1,883,335 - Psest_1788 0.50 -0.6
1,883,335 - Psest_1788 0.50 +0.3
1,883,355 + Psest_1788 0.51 +0.6
1,883,356 - Psest_1788 0.51 +0.3
1,883,377 + Psest_1788 0.52 +0.1

Or see this region's nucleotide sequence