Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0827

Experiment: Nitrate/ lactate media with Nitrate 50mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0825 and Psest_0826 are separated by 252 nucleotidesPsest_0826 and Psest_0827 are separated by 44 nucleotidesPsest_0827 and Psest_0828 are separated by 82 nucleotides Psest_0825: Psest_0825 - transcriptional regulator, AsnC family, at 896,819 to 897,325 _0825 Psest_0826: Psest_0826 - Cytochrome c, at 897,578 to 898,018 _0826 Psest_0827: Psest_0827 - Nitric oxide reductase large subunit, at 898,063 to 899,487 _0827 Psest_0828: Psest_0828 - Nitric oxide reductase activation protein, at 899,570 to 901,411 _0828 Position (kb) 898 899 900Strain fitness (log2 ratio) -2 -1 0 1at 897.159 kb on - strand, within Psest_0825at 897.544 kb on + strandat 897.544 kb on + strandat 897.613 kb on + strandat 897.613 kb on + strandat 897.614 kb on - strandat 897.614 kb on - strandat 897.617 kb on + strandat 897.617 kb on + strandat 897.617 kb on + strandat 897.617 kb on + strandat 897.618 kb on - strandat 897.618 kb on - strandat 897.618 kb on - strandat 897.618 kb on - strandat 897.649 kb on - strand, within Psest_0826at 897.661 kb on + strand, within Psest_0826at 897.661 kb on + strand, within Psest_0826at 897.661 kb on + strand, within Psest_0826at 897.662 kb on - strand, within Psest_0826at 897.662 kb on - strand, within Psest_0826at 897.662 kb on - strand, within Psest_0826at 897.662 kb on - strand, within Psest_0826at 897.662 kb on - strand, within Psest_0826at 897.662 kb on - strand, within Psest_0826at 897.662 kb on - strand, within Psest_0826at 897.665 kb on + strand, within Psest_0826at 897.665 kb on + strand, within Psest_0826at 897.665 kb on + strand, within Psest_0826at 897.665 kb on + strand, within Psest_0826at 897.665 kb on + strand, within Psest_0826at 897.665 kb on + strand, within Psest_0826at 897.665 kb on + strand, within Psest_0826at 897.666 kb on - strand, within Psest_0826at 897.666 kb on - strand, within Psest_0826at 897.726 kb on + strand, within Psest_0826at 897.794 kb on + strand, within Psest_0826at 897.986 kb on - strandat 898.117 kb on + strandat 898.117 kb on + strandat 898.117 kb on + strandat 898.117 kb on + strandat 898.117 kb on + strandat 898.117 kb on + strandat 898.118 kb on - strandat 898.118 kb on - strandat 898.183 kb on + strandat 898.183 kb on + strandat 898.183 kb on + strandat 898.183 kb on + strandat 898.291 kb on + strand, within Psest_0827at 898.291 kb on + strand, within Psest_0827at 898.291 kb on + strand, within Psest_0827at 898.291 kb on + strand, within Psest_0827at 898.292 kb on - strand, within Psest_0827at 898.292 kb on - strand, within Psest_0827at 898.294 kb on + strand, within Psest_0827at 898.294 kb on + strand, within Psest_0827at 898.294 kb on + strand, within Psest_0827at 898.294 kb on + strand, within Psest_0827at 898.294 kb on + strand, within Psest_0827at 898.295 kb on - strand, within Psest_0827at 898.295 kb on - strand, within Psest_0827at 898.295 kb on - strand, within Psest_0827at 898.295 kb on - strand, within Psest_0827at 898.496 kb on + strand, within Psest_0827at 898.496 kb on + strand, within Psest_0827at 898.496 kb on + strand, within Psest_0827at 898.497 kb on - strand, within Psest_0827at 898.497 kb on - strand, within Psest_0827at 898.497 kb on - strand, within Psest_0827at 898.497 kb on - strand, within Psest_0827at 898.528 kb on + strand, within Psest_0827at 898.529 kb on - strand, within Psest_0827at 898.529 kb on - strand, within Psest_0827at 898.529 kb on - strand, within Psest_0827at 898.630 kb on + strand, within Psest_0827at 898.630 kb on + strand, within Psest_0827at 898.630 kb on + strand, within Psest_0827at 898.630 kb on + strand, within Psest_0827at 898.631 kb on - strand, within Psest_0827at 898.631 kb on - strand, within Psest_0827at 898.631 kb on - strand, within Psest_0827at 898.631 kb on - strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.661 kb on - strand, within Psest_0827at 898.661 kb on - strand, within Psest_0827at 898.661 kb on - strand, within Psest_0827at 898.661 kb on - strand, within Psest_0827at 898.661 kb on - strand, within Psest_0827at 898.661 kb on - strand, within Psest_0827at 898.661 kb on - strand, within Psest_0827at 898.661 kb on - strand, within Psest_0827at 898.661 kb on - strand, within Psest_0827at 898.661 kb on - strand, within Psest_0827at 898.661 kb on - strand, within Psest_0827at 898.661 kb on - strand, within Psest_0827at 898.661 kb on - strand, within Psest_0827at 898.663 kb on + strand, within Psest_0827at 898.663 kb on + strand, within Psest_0827at 898.663 kb on + strand, within Psest_0827at 898.664 kb on - strand, within Psest_0827at 898.664 kb on - strand, within Psest_0827at 898.664 kb on - strand, within Psest_0827at 898.786 kb on + strand, within Psest_0827at 898.786 kb on + strand, within Psest_0827at 898.787 kb on - strand, within Psest_0827at 898.787 kb on - strand, within Psest_0827at 899.068 kb on + strand, within Psest_0827at 899.068 kb on + strand, within Psest_0827at 899.069 kb on - strand, within Psest_0827at 899.069 kb on - strand, within Psest_0827at 899.069 kb on - strand, within Psest_0827at 899.069 kb on - strand, within Psest_0827at 899.069 kb on - strand, within Psest_0827at 899.069 kb on - strand, within Psest_0827at 899.071 kb on + strand, within Psest_0827at 899.071 kb on + strand, within Psest_0827at 899.071 kb on + strand, within Psest_0827at 899.071 kb on + strand, within Psest_0827at 899.119 kb on + strand, within Psest_0827at 899.119 kb on + strand, within Psest_0827at 899.119 kb on + strand, within Psest_0827at 899.120 kb on - strand, within Psest_0827at 899.120 kb on - strand, within Psest_0827at 899.120 kb on - strand, within Psest_0827at 899.129 kb on - strand, within Psest_0827at 899.422 kb on + strandat 899.422 kb on + strandat 899.422 kb on + strandat 899.422 kb on + strandat 899.422 kb on + strandat 899.423 kb on - strandat 899.428 kb on + strandat 899.429 kb on - strandat 899.429 kb on - strandat 899.429 kb on - strandat 899.462 kb on + strandat 899.578 kb on + strandat 899.578 kb on + strandat 899.868 kb on - strand, within Psest_0828

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate/ lactate media with Nitrate 50mM
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897,159 - Psest_0825 0.67 +0.2
897,544 + +0.5
897,544 + -0.4
897,613 + -1.0
897,613 + -1.8
897,614 - +0.9
897,614 - -1.7
897,617 + -0.3
897,617 + -1.8
897,617 + -0.5
897,617 + -2.4
897,618 - -0.9
897,618 - -0.3
897,618 - -1.1
897,618 - -0.9
897,649 - Psest_0826 0.16 -0.9
897,661 + Psest_0826 0.19 -1.5
897,661 + Psest_0826 0.19 -2.0
897,661 + Psest_0826 0.19 -0.3
897,662 - Psest_0826 0.19 -1.1
897,662 - Psest_0826 0.19 -1.3
897,662 - Psest_0826 0.19 +0.5
897,662 - Psest_0826 0.19 -2.0
897,662 - Psest_0826 0.19 -0.8
897,662 - Psest_0826 0.19 -0.5
897,662 - Psest_0826 0.19 -0.3
897,665 + Psest_0826 0.20 -0.7
897,665 + Psest_0826 0.20 -1.5
897,665 + Psest_0826 0.20 -0.7
897,665 + Psest_0826 0.20 -1.5
897,665 + Psest_0826 0.20 -0.4
897,665 + Psest_0826 0.20 -1.3
897,665 + Psest_0826 0.20 -2.3
897,666 - Psest_0826 0.20 -0.8
897,666 - Psest_0826 0.20 -2.5
897,726 + Psest_0826 0.34 +1.1
897,794 + Psest_0826 0.49 -0.1
897,986 - -1.1
898,117 + -0.9
898,117 + +0.1
898,117 + -2.2
898,117 + +0.1
898,117 + +0.1
898,117 + -1.6
898,118 - -0.3
898,118 - +0.1
898,183 + -1.9
898,183 + +0.5
898,183 + +1.1
898,183 + -0.3
898,291 + Psest_0827 0.16 -1.4
898,291 + Psest_0827 0.16 -0.5
898,291 + Psest_0827 0.16 -2.3
898,291 + Psest_0827 0.16 -1.4
898,292 - Psest_0827 0.16 -2.3
898,292 - Psest_0827 0.16 +0.2
898,294 + Psest_0827 0.16 -0.8
898,294 + Psest_0827 0.16 +0.1
898,294 + Psest_0827 0.16 -1.5
898,294 + Psest_0827 0.16 -1.6
898,294 + Psest_0827 0.16 -2.0
898,295 - Psest_0827 0.16 -0.2
898,295 - Psest_0827 0.16 -1.2
898,295 - Psest_0827 0.16 -1.9
898,295 - Psest_0827 0.16 +0.7
898,496 + Psest_0827 0.30 -0.1
898,496 + Psest_0827 0.30 -1.7
898,496 + Psest_0827 0.30 -0.9
898,497 - Psest_0827 0.30 +0.1
898,497 - Psest_0827 0.30 -1.8
898,497 - Psest_0827 0.30 -1.8
898,497 - Psest_0827 0.30 -0.8
898,528 + Psest_0827 0.33 -0.8
898,529 - Psest_0827 0.33 -1.3
898,529 - Psest_0827 0.33 -1.8
898,529 - Psest_0827 0.33 -0.6
898,630 + Psest_0827 0.40 -0.8
898,630 + Psest_0827 0.40 -2.2
898,630 + Psest_0827 0.40 +0.1
898,630 + Psest_0827 0.40 +0.5
898,631 - Psest_0827 0.40 -0.9
898,631 - Psest_0827 0.40 -0.4
898,631 - Psest_0827 0.40 -1.4
898,631 - Psest_0827 0.40 +0.5
898,660 + Psest_0827 0.42 -0.3
898,660 + Psest_0827 0.42 -1.3
898,660 + Psest_0827 0.42 -1.3
898,660 + Psest_0827 0.42 -1.9
898,660 + Psest_0827 0.42 -1.0
898,660 + Psest_0827 0.42 +0.7
898,660 + Psest_0827 0.42 -0.9
898,660 + Psest_0827 0.42 -1.1
898,660 + Psest_0827 0.42 -1.6
898,660 + Psest_0827 0.42 -2.5
898,660 + Psest_0827 0.42 -1.4
898,660 + Psest_0827 0.42 -0.3
898,660 + Psest_0827 0.42 -1.5
898,660 + Psest_0827 0.42 +0.1
898,660 + Psest_0827 0.42 -0.1
898,660 + Psest_0827 0.42 -0.5
898,660 + Psest_0827 0.42 +1.1
898,660 + Psest_0827 0.42 -2.2
898,660 + Psest_0827 0.42 -0.5
898,660 + Psest_0827 0.42 -1.6
898,661 - Psest_0827 0.42 -0.7
898,661 - Psest_0827 0.42 -2.3
898,661 - Psest_0827 0.42 -1.3
898,661 - Psest_0827 0.42 +0.2
898,661 - Psest_0827 0.42 -1.2
898,661 - Psest_0827 0.42 -1.1
898,661 - Psest_0827 0.42 +0.5
898,661 - Psest_0827 0.42 -2.1
898,661 - Psest_0827 0.42 -0.9
898,661 - Psest_0827 0.42 -0.4
898,661 - Psest_0827 0.42 -0.9
898,661 - Psest_0827 0.42 -0.8
898,661 - Psest_0827 0.42 -2.1
898,663 + Psest_0827 0.42 +0.1
898,663 + Psest_0827 0.42 -0.4
898,663 + Psest_0827 0.42 -2.0
898,664 - Psest_0827 0.42 -0.3
898,664 - Psest_0827 0.42 +1.1
898,664 - Psest_0827 0.42 +0.1
898,786 + Psest_0827 0.51 -0.2
898,786 + Psest_0827 0.51 -0.8
898,787 - Psest_0827 0.51 +0.2
898,787 - Psest_0827 0.51 -1.0
899,068 + Psest_0827 0.71 -0.5
899,068 + Psest_0827 0.71 +1.1
899,069 - Psest_0827 0.71 -0.8
899,069 - Psest_0827 0.71 -2.2
899,069 - Psest_0827 0.71 +0.8
899,069 - Psest_0827 0.71 -0.5
899,069 - Psest_0827 0.71 -0.3
899,069 - Psest_0827 0.71 +0.5
899,071 + Psest_0827 0.71 -0.3
899,071 + Psest_0827 0.71 -1.3
899,071 + Psest_0827 0.71 -0.3
899,071 + Psest_0827 0.71 -0.8
899,119 + Psest_0827 0.74 -1.9
899,119 + Psest_0827 0.74 -1.1
899,119 + Psest_0827 0.74 +0.1
899,120 - Psest_0827 0.74 +0.1
899,120 - Psest_0827 0.74 -0.7
899,120 - Psest_0827 0.74 -0.5
899,129 - Psest_0827 0.75 -2.2
899,422 + -0.5
899,422 + +0.8
899,422 + +1.6
899,422 + +0.5
899,422 + -0.9
899,423 - -0.3
899,428 + -0.3
899,429 - -0.8
899,429 - +1.1
899,429 - -1.6
899,462 + -0.6
899,578 + -0.5
899,578 + -0.6
899,868 - Psest_0828 0.16 -0.9

Or see this region's nucleotide sequence