Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0622

Experiment: Nitrate/ lactate media with Nitrate 50mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0620 and Psest_0621 are separated by 4 nucleotidesPsest_0621 and Psest_0622 overlap by 4 nucleotidesPsest_0622 and Psest_0623 are separated by 185 nucleotides Psest_0620: Psest_0620 - Putative protein-S-isoprenylcysteine methyltransferase, at 672,423 to 672,884 _0620 Psest_0621: Psest_0621 - Protein-disulfide isomerase, at 672,889 to 673,569 _0621 Psest_0622: Psest_0622 - Disulfide bond formation protein DsbB, at 673,566 to 674,000 _0622 Psest_0623: Psest_0623 - Arsenite efflux pump ACR3 and related permeases, at 674,186 to 675,169 _0623 Position (kb) 673 674 675Strain fitness (log2 ratio) -2 -1 0 1 2 3at 672.606 kb on + strand, within Psest_0620at 672.606 kb on + strand, within Psest_0620at 672.606 kb on + strand, within Psest_0620at 672.607 kb on - strand, within Psest_0620at 672.610 kb on + strand, within Psest_0620at 672.610 kb on + strand, within Psest_0620at 672.610 kb on + strand, within Psest_0620at 672.610 kb on + strand, within Psest_0620at 672.610 kb on + strand, within Psest_0620at 672.610 kb on + strand, within Psest_0620at 672.610 kb on + strand, within Psest_0620at 672.611 kb on - strand, within Psest_0620at 672.611 kb on - strand, within Psest_0620at 672.611 kb on - strand, within Psest_0620at 672.611 kb on - strand, within Psest_0620at 672.611 kb on - strand, within Psest_0620at 672.611 kb on - strand, within Psest_0620at 672.611 kb on - strand, within Psest_0620at 672.611 kb on - strand, within Psest_0620at 672.611 kb on - strand, within Psest_0620at 672.611 kb on - strand, within Psest_0620at 672.611 kb on - strand, within Psest_0620at 672.611 kb on - strand, within Psest_0620at 672.611 kb on - strand, within Psest_0620at 672.611 kb on - strand, within Psest_0620at 672.611 kb on - strand, within Psest_0620at 672.611 kb on - strand, within Psest_0620at 672.611 kb on - strand, within Psest_0620at 672.611 kb on - strand, within Psest_0620at 672.611 kb on - strand, within Psest_0620at 672.611 kb on - strand, within Psest_0620at 672.611 kb on - strand, within Psest_0620at 672.611 kb on - strand, within Psest_0620at 672.611 kb on - strand, within Psest_0620at 672.634 kb on + strand, within Psest_0620at 672.634 kb on + strand, within Psest_0620at 672.634 kb on + strand, within Psest_0620at 672.635 kb on - strand, within Psest_0620at 672.635 kb on - strand, within Psest_0620at 672.651 kb on + strand, within Psest_0620at 672.652 kb on - strand, within Psest_0620at 672.689 kb on + strand, within Psest_0620at 672.689 kb on + strand, within Psest_0620at 672.689 kb on + strand, within Psest_0620at 672.689 kb on + strand, within Psest_0620at 672.689 kb on + strand, within Psest_0620at 672.690 kb on - strand, within Psest_0620at 672.690 kb on - strand, within Psest_0620at 672.692 kb on + strand, within Psest_0620at 672.693 kb on - strand, within Psest_0620at 672.693 kb on - strand, within Psest_0620at 672.750 kb on + strand, within Psest_0620at 672.750 kb on + strand, within Psest_0620at 672.884 kb on + strandat 672.885 kb on - strandat 672.885 kb on - strandat 672.885 kb on - strandat 672.885 kb on - strandat 673.009 kb on - strand, within Psest_0621at 673.009 kb on - strand, within Psest_0621at 673.053 kb on + strand, within Psest_0621at 673.053 kb on + strand, within Psest_0621at 673.053 kb on + strand, within Psest_0621at 673.053 kb on + strand, within Psest_0621at 673.053 kb on + strand, within Psest_0621at 673.053 kb on + strand, within Psest_0621at 673.054 kb on - strand, within Psest_0621at 673.054 kb on - strand, within Psest_0621at 673.121 kb on - strand, within Psest_0621at 673.246 kb on + strand, within Psest_0621at 673.246 kb on + strand, within Psest_0621at 673.246 kb on + strand, within Psest_0621at 673.246 kb on + strand, within Psest_0621at 673.246 kb on + strand, within Psest_0621at 673.246 kb on + strand, within Psest_0621at 673.246 kb on + strand, within Psest_0621at 673.246 kb on + strand, within Psest_0621at 673.246 kb on + strand, within Psest_0621at 673.246 kb on + strand, within Psest_0621at 673.246 kb on + strand, within Psest_0621at 673.246 kb on + strand, within Psest_0621at 673.247 kb on - strand, within Psest_0621at 673.247 kb on - strand, within Psest_0621at 673.247 kb on - strand, within Psest_0621at 673.247 kb on - strand, within Psest_0621at 673.247 kb on - strand, within Psest_0621at 673.247 kb on - strand, within Psest_0621at 673.247 kb on - strand, within Psest_0621at 673.247 kb on - strand, within Psest_0621at 673.247 kb on - strand, within Psest_0621at 673.247 kb on - strand, within Psest_0621at 673.247 kb on - strand, within Psest_0621at 673.247 kb on - strand, within Psest_0621at 673.247 kb on - strand, within Psest_0621at 673.247 kb on - strand, within Psest_0621at 673.247 kb on - strand, within Psest_0621at 673.247 kb on - strand, within Psest_0621at 673.247 kb on - strand, within Psest_0621at 673.247 kb on - strand, within Psest_0621at 673.247 kb on - strand, within Psest_0621at 673.247 kb on - strand, within Psest_0621at 673.247 kb on - strand, within Psest_0621at 673.247 kb on - strand, within Psest_0621at 673.247 kb on - strand, within Psest_0621at 673.247 kb on - strand, within Psest_0621at 673.247 kb on - strand, within Psest_0621at 673.247 kb on - strand, within Psest_0621at 673.247 kb on - strand, within Psest_0621at 673.247 kb on - strand, within Psest_0621at 673.247 kb on - strand, within Psest_0621at 673.247 kb on - strand, within Psest_0621at 673.247 kb on - strand, within Psest_0621at 673.247 kb on - strand, within Psest_0621at 673.247 kb on - strand, within Psest_0621at 673.247 kb on - strand, within Psest_0621at 673.250 kb on + strand, within Psest_0621at 673.250 kb on + strand, within Psest_0621at 673.251 kb on - strand, within Psest_0621at 673.251 kb on - strand, within Psest_0621at 673.304 kb on + strand, within Psest_0621at 673.304 kb on + strand, within Psest_0621at 673.304 kb on + strand, within Psest_0621at 673.304 kb on + strand, within Psest_0621at 673.305 kb on - strand, within Psest_0621at 673.305 kb on - strand, within Psest_0621at 673.496 kb on + strand, within Psest_0621at 673.496 kb on + strand, within Psest_0621at 673.496 kb on + strand, within Psest_0621at 673.496 kb on + strand, within Psest_0621at 673.496 kb on + strand, within Psest_0621at 673.497 kb on - strand, within Psest_0621at 673.497 kb on - strand, within Psest_0621at 673.593 kb on + strandat 673.593 kb on + strandat 673.593 kb on + strandat 673.594 kb on - strandat 673.594 kb on - strandat 673.594 kb on - strandat 673.594 kb on - strandat 673.616 kb on + strand, within Psest_0622at 673.617 kb on - strand, within Psest_0622at 673.735 kb on + strand, within Psest_0622at 673.736 kb on - strand, within Psest_0622at 673.736 kb on - strand, within Psest_0622at 673.736 kb on - strand, within Psest_0622at 673.792 kb on + strand, within Psest_0622at 673.793 kb on - strand, within Psest_0622at 673.956 kb on + strand, within Psest_0622at 673.957 kb on - strandat 674.053 kb on + strandat 674.053 kb on + strandat 674.053 kb on + strandat 674.054 kb on - strandat 674.095 kb on - strandat 674.155 kb on + strandat 674.241 kb on + strandat 674.242 kb on - strandat 674.249 kb on + strandat 674.249 kb on + strandat 674.249 kb on + strandat 674.250 kb on - strandat 674.250 kb on - strandat 674.250 kb on - strandat 674.351 kb on + strand, within Psest_0623at 674.351 kb on + strand, within Psest_0623at 674.351 kb on + strand, within Psest_0623at 674.351 kb on + strand, within Psest_0623at 674.351 kb on + strand, within Psest_0623at 674.351 kb on + strand, within Psest_0623at 674.351 kb on + strand, within Psest_0623at 674.351 kb on + strand, within Psest_0623at 674.351 kb on + strand, within Psest_0623at 674.351 kb on + strand, within Psest_0623at 674.351 kb on + strand, within Psest_0623at 674.351 kb on + strand, within Psest_0623at 674.351 kb on + strand, within Psest_0623at 674.351 kb on + strand, within Psest_0623at 674.351 kb on + strand, within Psest_0623at 674.351 kb on + strand, within Psest_0623at 674.351 kb on + strand, within Psest_0623at 674.351 kb on + strand, within Psest_0623at 674.351 kb on + strand, within Psest_0623at 674.352 kb on - strand, within Psest_0623at 674.352 kb on - strand, within Psest_0623at 674.352 kb on - strand, within Psest_0623at 674.352 kb on - strand, within Psest_0623at 674.352 kb on - strand, within Psest_0623at 674.352 kb on - strand, within Psest_0623at 674.352 kb on - strand, within Psest_0623at 674.352 kb on - strand, within Psest_0623at 674.352 kb on - strand, within Psest_0623at 674.352 kb on - strand, within Psest_0623at 674.352 kb on - strand, within Psest_0623at 674.352 kb on - strand, within Psest_0623at 674.352 kb on - strand, within Psest_0623at 674.352 kb on - strand, within Psest_0623at 674.352 kb on - strand, within Psest_0623at 674.352 kb on - strand, within Psest_0623at 674.442 kb on + strand, within Psest_0623at 674.443 kb on - strand, within Psest_0623at 674.443 kb on - strand, within Psest_0623at 674.536 kb on + strand, within Psest_0623at 674.536 kb on + strand, within Psest_0623at 674.536 kb on + strand, within Psest_0623at 674.537 kb on - strand, within Psest_0623at 674.543 kb on + strand, within Psest_0623at 674.543 kb on + strand, within Psest_0623at 674.543 kb on + strand, within Psest_0623at 674.544 kb on - strand, within Psest_0623at 674.642 kb on + strand, within Psest_0623at 674.642 kb on + strand, within Psest_0623at 674.643 kb on - strand, within Psest_0623at 674.838 kb on + strand, within Psest_0623at 674.910 kb on + strand, within Psest_0623at 674.926 kb on - strand, within Psest_0623at 674.928 kb on + strand, within Psest_0623

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate/ lactate media with Nitrate 50mM
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672,606 + Psest_0620 0.40 -0.2
672,606 + Psest_0620 0.40 -0.3
672,606 + Psest_0620 0.40 -1.0
672,607 - Psest_0620 0.40 +0.5
672,610 + Psest_0620 0.40 -1.8
672,610 + Psest_0620 0.40 -0.3
672,610 + Psest_0620 0.40 +0.9
672,610 + Psest_0620 0.40 -0.4
672,610 + Psest_0620 0.40 -0.9
672,610 + Psest_0620 0.40 +3.1
672,610 + Psest_0620 0.40 -0.6
672,611 - Psest_0620 0.41 +0.5
672,611 - Psest_0620 0.41 -1.0
672,611 - Psest_0620 0.41 -1.6
672,611 - Psest_0620 0.41 -0.2
672,611 - Psest_0620 0.41 +0.1
672,611 - Psest_0620 0.41 -0.4
672,611 - Psest_0620 0.41 +0.2
672,611 - Psest_0620 0.41 -0.8
672,611 - Psest_0620 0.41 -1.2
672,611 - Psest_0620 0.41 -0.1
672,611 - Psest_0620 0.41 -1.2
672,611 - Psest_0620 0.41 +1.6
672,611 - Psest_0620 0.41 -0.6
672,611 - Psest_0620 0.41 +0.7
672,611 - Psest_0620 0.41 -0.8
672,611 - Psest_0620 0.41 +1.1
672,611 - Psest_0620 0.41 -2.1
672,611 - Psest_0620 0.41 -2.1
672,611 - Psest_0620 0.41 +1.5
672,611 - Psest_0620 0.41 +1.1
672,611 - Psest_0620 0.41 +0.1
672,611 - Psest_0620 0.41 +0.5
672,611 - Psest_0620 0.41 +2.7
672,634 + Psest_0620 0.46 +0.3
672,634 + Psest_0620 0.46 -2.4
672,634 + Psest_0620 0.46 -0.6
672,635 - Psest_0620 0.46 +0.3
672,635 - Psest_0620 0.46 +0.1
672,651 + Psest_0620 0.49 -0.8
672,652 - Psest_0620 0.50 +0.9
672,689 + Psest_0620 0.58 -0.5
672,689 + Psest_0620 0.58 -1.9
672,689 + Psest_0620 0.58 -1.4
672,689 + Psest_0620 0.58 -1.2
672,689 + Psest_0620 0.58 -0.5
672,690 - Psest_0620 0.58 -0.2
672,690 - Psest_0620 0.58 -0.3
672,692 + Psest_0620 0.58 -0.7
672,693 - Psest_0620 0.58 +0.9
672,693 - Psest_0620 0.58 -1.2
672,750 + Psest_0620 0.71 +0.5
672,750 + Psest_0620 0.71 +0.5
672,884 + +1.1
672,885 - +0.6
672,885 - +0.6
672,885 - -0.9
672,885 - +0.1
673,009 - Psest_0621 0.18 -0.5
673,009 - Psest_0621 0.18 -0.2
673,053 + Psest_0621 0.24 -1.4
673,053 + Psest_0621 0.24 +0.8
673,053 + Psest_0621 0.24 -1.6
673,053 + Psest_0621 0.24 +0.2
673,053 + Psest_0621 0.24 -1.5
673,053 + Psest_0621 0.24 +1.3
673,054 - Psest_0621 0.24 +0.5
673,054 - Psest_0621 0.24 +1.1
673,121 - Psest_0621 0.34 -0.7
673,246 + Psest_0621 0.52 +0.8
673,246 + Psest_0621 0.52 -0.9
673,246 + Psest_0621 0.52 +0.3
673,246 + Psest_0621 0.52 +0.2
673,246 + Psest_0621 0.52 -0.1
673,246 + Psest_0621 0.52 -1.6
673,246 + Psest_0621 0.52 +0.3
673,246 + Psest_0621 0.52 -0.0
673,246 + Psest_0621 0.52 +0.5
673,246 + Psest_0621 0.52 -0.7
673,246 + Psest_0621 0.52 +0.1
673,246 + Psest_0621 0.52 -0.4
673,247 - Psest_0621 0.53 +0.3
673,247 - Psest_0621 0.53 -1.9
673,247 - Psest_0621 0.53 -1.4
673,247 - Psest_0621 0.53 +0.9
673,247 - Psest_0621 0.53 -0.5
673,247 - Psest_0621 0.53 +0.6
673,247 - Psest_0621 0.53 -1.5
673,247 - Psest_0621 0.53 -0.5
673,247 - Psest_0621 0.53 +0.2
673,247 - Psest_0621 0.53 +0.8
673,247 - Psest_0621 0.53 +1.8
673,247 - Psest_0621 0.53 -0.4
673,247 - Psest_0621 0.53 -1.1
673,247 - Psest_0621 0.53 -2.0
673,247 - Psest_0621 0.53 +0.1
673,247 - Psest_0621 0.53 -0.1
673,247 - Psest_0621 0.53 -1.1
673,247 - Psest_0621 0.53 -0.7
673,247 - Psest_0621 0.53 +0.3
673,247 - Psest_0621 0.53 -1.7
673,247 - Psest_0621 0.53 -0.2
673,247 - Psest_0621 0.53 +1.1
673,247 - Psest_0621 0.53 +0.5
673,247 - Psest_0621 0.53 -0.3
673,247 - Psest_0621 0.53 +0.2
673,247 - Psest_0621 0.53 -0.1
673,247 - Psest_0621 0.53 +0.5
673,247 - Psest_0621 0.53 +1.1
673,247 - Psest_0621 0.53 -0.5
673,247 - Psest_0621 0.53 +0.1
673,247 - Psest_0621 0.53 +0.2
673,247 - Psest_0621 0.53 +0.1
673,247 - Psest_0621 0.53 -0.5
673,247 - Psest_0621 0.53 -0.7
673,250 + Psest_0621 0.53 +0.8
673,250 + Psest_0621 0.53 +0.3
673,251 - Psest_0621 0.53 +1.1
673,251 - Psest_0621 0.53 -1.7
673,304 + Psest_0621 0.61 -2.0
673,304 + Psest_0621 0.61 +0.2
673,304 + Psest_0621 0.61 -0.1
673,304 + Psest_0621 0.61 -1.2
673,305 - Psest_0621 0.61 +0.4
673,305 - Psest_0621 0.61 -1.4
673,496 + Psest_0621 0.89 +0.2
673,496 + Psest_0621 0.89 -0.3
673,496 + Psest_0621 0.89 +0.1
673,496 + Psest_0621 0.89 +0.1
673,496 + Psest_0621 0.89 -0.7
673,497 - Psest_0621 0.89 +1.3
673,497 - Psest_0621 0.89 +0.0
673,593 + +1.2
673,593 + +1.5
673,593 + -0.3
673,594 - +0.5
673,594 - -0.5
673,594 - -0.2
673,594 - -0.1
673,616 + Psest_0622 0.11 -0.6
673,617 - Psest_0622 0.12 -0.4
673,735 + Psest_0622 0.39 -0.5
673,736 - Psest_0622 0.39 -0.2
673,736 - Psest_0622 0.39 -0.5
673,736 - Psest_0622 0.39 -1.0
673,792 + Psest_0622 0.52 -1.5
673,793 - Psest_0622 0.52 -0.9
673,956 + Psest_0622 0.90 -0.1
673,957 - +0.3
674,053 + -1.6
674,053 + +1.0
674,053 + +0.8
674,054 - -0.7
674,095 - -0.6
674,155 + +0.5
674,241 + -0.3
674,242 - -0.7
674,249 + -1.0
674,249 + +0.8
674,249 + +0.1
674,250 - +0.5
674,250 - -0.2
674,250 - +0.5
674,351 + Psest_0623 0.17 -0.8
674,351 + Psest_0623 0.17 +0.1
674,351 + Psest_0623 0.17 -2.0
674,351 + Psest_0623 0.17 -1.2
674,351 + Psest_0623 0.17 -0.7
674,351 + Psest_0623 0.17 -1.8
674,351 + Psest_0623 0.17 +0.5
674,351 + Psest_0623 0.17 +1.1
674,351 + Psest_0623 0.17 -1.2
674,351 + Psest_0623 0.17 -0.1
674,351 + Psest_0623 0.17 -0.2
674,351 + Psest_0623 0.17 +0.7
674,351 + Psest_0623 0.17 +2.1
674,351 + Psest_0623 0.17 -0.5
674,351 + Psest_0623 0.17 -0.6
674,351 + Psest_0623 0.17 -0.1
674,351 + Psest_0623 0.17 +0.6
674,351 + Psest_0623 0.17 +0.2
674,351 + Psest_0623 0.17 +0.5
674,352 - Psest_0623 0.17 -1.2
674,352 - Psest_0623 0.17 -0.0
674,352 - Psest_0623 0.17 +0.5
674,352 - Psest_0623 0.17 -0.9
674,352 - Psest_0623 0.17 -0.3
674,352 - Psest_0623 0.17 +0.5
674,352 - Psest_0623 0.17 +3.1
674,352 - Psest_0623 0.17 +0.1
674,352 - Psest_0623 0.17 -0.4
674,352 - Psest_0623 0.17 +0.7
674,352 - Psest_0623 0.17 +0.1
674,352 - Psest_0623 0.17 -0.2
674,352 - Psest_0623 0.17 -0.7
674,352 - Psest_0623 0.17 +0.5
674,352 - Psest_0623 0.17 -1.7
674,352 - Psest_0623 0.17 -0.0
674,442 + Psest_0623 0.26 -1.1
674,443 - Psest_0623 0.26 +1.5
674,443 - Psest_0623 0.26 -0.6
674,536 + Psest_0623 0.36 -0.8
674,536 + Psest_0623 0.36 +0.5
674,536 + Psest_0623 0.36 -0.9
674,537 - Psest_0623 0.36 -0.1
674,543 + Psest_0623 0.36 +1.1
674,543 + Psest_0623 0.36 +1.5
674,543 + Psest_0623 0.36 -0.7
674,544 - Psest_0623 0.36 -0.4
674,642 + Psest_0623 0.46 +1.1
674,642 + Psest_0623 0.46 -0.1
674,643 - Psest_0623 0.46 -0.5
674,838 + Psest_0623 0.66 -1.6
674,910 + Psest_0623 0.74 +0.1
674,926 - Psest_0623 0.75 -0.1
674,928 + Psest_0623 0.75 -0.1

Or see this region's nucleotide sequence