Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0594

Experiment: Nitrate/ lactate media with Nitrate 50mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0591 and Psest_0592 are separated by 90 nucleotidesPsest_0592 and Psest_0593 are separated by 23 nucleotidesPsest_0593 and Psest_0594 are separated by 32 nucleotidesPsest_0594 and Psest_0595 are separated by 142 nucleotidesPsest_0595 and Psest_0596 overlap by 4 nucleotides Psest_0591: Psest_0591 - heavy metal sensor kinase, at 642,111 to 643,484 _0591 Psest_0592: Psest_0592 - hypothetical protein, at 643,575 to 643,805 _0592 Psest_0593: Psest_0593 - Protein of unknown function (DUF2933)., at 643,829 to 644,086 _0593 Psest_0594: Psest_0594 - hypothetical protein, at 644,119 to 644,436 _0594 Psest_0595: Psest_0595 - Uncharacterized conserved protein, at 644,579 to 644,935 _0595 Psest_0596: Psest_0596 - heavy metal efflux pump (cobalt-zinc-cadmium), at 644,932 to 648,096 _0596 Position (kb) 644 645Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 643.220 kb on + strand, within Psest_0591at 643.220 kb on + strand, within Psest_0591at 643.227 kb on + strand, within Psest_0591at 643.227 kb on + strand, within Psest_0591at 643.228 kb on - strand, within Psest_0591at 643.230 kb on + strand, within Psest_0591at 643.231 kb on - strand, within Psest_0591at 643.231 kb on - strand, within Psest_0591at 643.317 kb on + strand, within Psest_0591at 643.322 kb on + strand, within Psest_0591at 643.322 kb on + strand, within Psest_0591at 643.322 kb on + strand, within Psest_0591at 643.322 kb on + strand, within Psest_0591at 643.322 kb on + strand, within Psest_0591at 643.322 kb on + strand, within Psest_0591at 643.330 kb on - strand, within Psest_0591at 643.489 kb on - strandat 643.489 kb on - strandat 643.558 kb on - strandat 643.571 kb on + strandat 643.572 kb on - strandat 643.572 kb on - strandat 643.572 kb on - strandat 643.576 kb on + strandat 643.577 kb on - strandat 643.577 kb on - strandat 643.577 kb on - strandat 643.682 kb on + strand, within Psest_0592at 643.733 kb on + strand, within Psest_0592at 643.733 kb on + strand, within Psest_0592at 643.734 kb on - strand, within Psest_0592at 643.809 kb on - strandat 643.809 kb on - strandat 643.903 kb on + strand, within Psest_0593at 643.903 kb on + strand, within Psest_0593at 643.903 kb on + strand, within Psest_0593at 643.903 kb on + strand, within Psest_0593at 643.903 kb on + strand, within Psest_0593at 643.903 kb on + strand, within Psest_0593at 643.903 kb on + strand, within Psest_0593at 643.903 kb on + strand, within Psest_0593at 643.903 kb on + strand, within Psest_0593at 643.903 kb on + strand, within Psest_0593at 643.903 kb on + strand, within Psest_0593at 643.904 kb on - strand, within Psest_0593at 643.904 kb on - strand, within Psest_0593at 643.904 kb on - strand, within Psest_0593at 643.904 kb on - strand, within Psest_0593at 643.904 kb on - strand, within Psest_0593at 643.904 kb on - strand, within Psest_0593at 643.904 kb on - strand, within Psest_0593at 643.904 kb on - strand, within Psest_0593at 643.904 kb on - strand, within Psest_0593at 643.904 kb on - strand, within Psest_0593at 643.916 kb on + strand, within Psest_0593at 644.005 kb on - strand, within Psest_0593at 644.076 kb on - strandat 644.088 kb on + strandat 644.088 kb on + strandat 644.089 kb on - strandat 644.093 kb on - strandat 644.106 kb on + strandat 644.107 kb on - strandat 644.107 kb on - strandat 644.164 kb on - strand, within Psest_0594at 644.201 kb on + strand, within Psest_0594at 644.202 kb on - strand, within Psest_0594at 644.221 kb on - strand, within Psest_0594at 644.221 kb on - strand, within Psest_0594at 644.226 kb on + strand, within Psest_0594at 644.226 kb on + strand, within Psest_0594at 644.226 kb on + strand, within Psest_0594at 644.228 kb on + strand, within Psest_0594at 644.228 kb on + strand, within Psest_0594at 644.307 kb on + strand, within Psest_0594at 644.307 kb on + strand, within Psest_0594at 644.339 kb on - strand, within Psest_0594at 644.339 kb on - strand, within Psest_0594at 644.352 kb on + strand, within Psest_0594at 644.352 kb on + strand, within Psest_0594at 644.403 kb on + strand, within Psest_0594at 644.455 kb on - strandat 644.467 kb on + strandat 644.467 kb on + strandat 644.468 kb on - strandat 644.484 kb on - strandat 644.487 kb on + strandat 644.487 kb on + strandat 644.488 kb on - strandat 644.488 kb on - strandat 644.488 kb on - strandat 644.488 kb on - strandat 644.488 kb on - strandat 644.510 kb on - strandat 644.580 kb on + strandat 644.615 kb on - strand, within Psest_0595at 644.765 kb on + strand, within Psest_0595at 644.766 kb on - strand, within Psest_0595at 644.766 kb on - strand, within Psest_0595at 644.779 kb on + strand, within Psest_0595at 644.883 kb on + strand, within Psest_0595at 644.883 kb on + strand, within Psest_0595at 644.883 kb on + strand, within Psest_0595at 644.884 kb on - strand, within Psest_0595at 644.926 kb on + strandat 644.926 kb on + strandat 644.927 kb on - strandat 644.974 kb on - strandat 644.974 kb on - strandat 645.005 kb on + strandat 645.005 kb on + strandat 645.006 kb on - strandat 645.145 kb on + strandat 645.205 kb on + strandat 645.206 kb on - strandat 645.260 kb on + strand, within Psest_0596at 645.260 kb on + strand, within Psest_0596at 645.260 kb on + strand, within Psest_0596at 645.260 kb on + strand, within Psest_0596at 645.261 kb on - strand, within Psest_0596at 645.261 kb on - strand, within Psest_0596at 645.261 kb on - strand, within Psest_0596at 645.261 kb on - strand, within Psest_0596at 645.261 kb on - strand, within Psest_0596at 645.261 kb on - strand, within Psest_0596at 645.261 kb on - strand, within Psest_0596at 645.270 kb on + strand, within Psest_0596at 645.270 kb on + strand, within Psest_0596at 645.271 kb on - strand, within Psest_0596at 645.271 kb on - strand, within Psest_0596at 645.271 kb on - strand, within Psest_0596at 645.341 kb on + strand, within Psest_0596at 645.353 kb on + strand, within Psest_0596at 645.354 kb on - strand, within Psest_0596at 645.354 kb on - strand, within Psest_0596

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate/ lactate media with Nitrate 50mM
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643,220 + Psest_0591 0.81 -0.1
643,220 + Psest_0591 0.81 -0.8
643,227 + Psest_0591 0.81 +0.3
643,227 + Psest_0591 0.81 +0.1
643,228 - Psest_0591 0.81 -0.2
643,230 + Psest_0591 0.81 -1.5
643,231 - Psest_0591 0.82 -0.0
643,231 - Psest_0591 0.82 +0.2
643,317 + Psest_0591 0.88 -0.2
643,322 + Psest_0591 0.88 -0.0
643,322 + Psest_0591 0.88 -0.1
643,322 + Psest_0591 0.88 -2.1
643,322 + Psest_0591 0.88 -1.2
643,322 + Psest_0591 0.88 -0.7
643,322 + Psest_0591 0.88 +0.1
643,330 - Psest_0591 0.89 +0.5
643,489 - +1.1
643,489 - -0.5
643,558 - -0.7
643,571 + -0.5
643,572 - +0.3
643,572 - +0.3
643,572 - -0.6
643,576 + -0.3
643,577 - -2.5
643,577 - -1.0
643,577 - +2.1
643,682 + Psest_0592 0.46 -1.7
643,733 + Psest_0592 0.68 +1.1
643,733 + Psest_0592 0.68 +0.7
643,734 - Psest_0592 0.69 -0.8
643,809 - -0.9
643,809 - -1.9
643,903 + Psest_0593 0.29 +0.7
643,903 + Psest_0593 0.29 +0.5
643,903 + Psest_0593 0.29 -0.5
643,903 + Psest_0593 0.29 +0.7
643,903 + Psest_0593 0.29 +0.1
643,903 + Psest_0593 0.29 +1.1
643,903 + Psest_0593 0.29 -1.9
643,903 + Psest_0593 0.29 -1.9
643,903 + Psest_0593 0.29 -0.3
643,903 + Psest_0593 0.29 -0.8
643,903 + Psest_0593 0.29 +0.3
643,904 - Psest_0593 0.29 -0.2
643,904 - Psest_0593 0.29 -0.3
643,904 - Psest_0593 0.29 -0.2
643,904 - Psest_0593 0.29 +0.8
643,904 - Psest_0593 0.29 -0.7
643,904 - Psest_0593 0.29 -1.1
643,904 - Psest_0593 0.29 +1.3
643,904 - Psest_0593 0.29 -0.3
643,904 - Psest_0593 0.29 -1.5
643,904 - Psest_0593 0.29 -0.3
643,916 + Psest_0593 0.34 +0.7
644,005 - Psest_0593 0.68 -0.9
644,076 - +1.0
644,088 + -0.1
644,088 + -0.6
644,089 - -1.1
644,093 - +0.5
644,106 + -1.9
644,107 - -0.8
644,107 - -0.5
644,164 - Psest_0594 0.14 -0.4
644,201 + Psest_0594 0.26 -0.7
644,202 - Psest_0594 0.26 -1.1
644,221 - Psest_0594 0.32 +0.5
644,221 - Psest_0594 0.32 -0.4
644,226 + Psest_0594 0.34 -0.5
644,226 + Psest_0594 0.34 -1.0
644,226 + Psest_0594 0.34 -1.6
644,228 + Psest_0594 0.34 +1.1
644,228 + Psest_0594 0.34 -1.6
644,307 + Psest_0594 0.59 +0.1
644,307 + Psest_0594 0.59 -0.2
644,339 - Psest_0594 0.69 -0.3
644,339 - Psest_0594 0.69 +2.1
644,352 + Psest_0594 0.73 +0.5
644,352 + Psest_0594 0.73 -1.9
644,403 + Psest_0594 0.89 +0.6
644,455 - +0.7
644,467 + -0.7
644,467 + -0.3
644,468 - -0.5
644,484 - +0.3
644,487 + +0.5
644,487 + -0.4
644,488 - -0.9
644,488 - +0.5
644,488 - -0.2
644,488 - -0.9
644,488 - +0.5
644,510 - -0.9
644,580 + +0.1
644,615 - Psest_0595 0.10 -0.9
644,765 + Psest_0595 0.52 +0.1
644,766 - Psest_0595 0.52 +1.1
644,766 - Psest_0595 0.52 -1.8
644,779 + Psest_0595 0.56 +1.1
644,883 + Psest_0595 0.85 -0.5
644,883 + Psest_0595 0.85 +0.1
644,883 + Psest_0595 0.85 -1.3
644,884 - Psest_0595 0.85 -0.7
644,926 + -0.9
644,926 + +2.1
644,927 - +0.3
644,974 - +1.5
644,974 - -0.3
645,005 + -0.3
645,005 + -0.5
645,006 - +0.2
645,145 + -1.3
645,205 + +0.7
645,206 - +0.3
645,260 + Psest_0596 0.10 +0.6
645,260 + Psest_0596 0.10 -0.5
645,260 + Psest_0596 0.10 +0.5
645,260 + Psest_0596 0.10 -2.8
645,261 - Psest_0596 0.10 +1.5
645,261 - Psest_0596 0.10 -1.1
645,261 - Psest_0596 0.10 -0.2
645,261 - Psest_0596 0.10 -1.1
645,261 - Psest_0596 0.10 -0.7
645,261 - Psest_0596 0.10 +0.3
645,261 - Psest_0596 0.10 -0.1
645,270 + Psest_0596 0.11 +0.0
645,270 + Psest_0596 0.11 -0.1
645,271 - Psest_0596 0.11 -1.1
645,271 - Psest_0596 0.11 +0.1
645,271 - Psest_0596 0.11 +2.1
645,341 + Psest_0596 0.13 +2.6
645,353 + Psest_0596 0.13 +0.1
645,354 - Psest_0596 0.13 -0.9
645,354 - Psest_0596 0.13 +0.6

Or see this region's nucleotide sequence