Experiment: Nitrate/ lactate media with Nitrate 50mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0505 and Psest_0506 are separated by 10 nucleotides Psest_0506 and Psest_0507 are separated by 27 nucleotides Psest_0507 and Psest_0508 are separated by 216 nucleotides
Psest_0505: Psest_0505 - Putative effector of murein hydrolase, at 559,098 to 559,817
_0505
Psest_0506: Psest_0506 - Uncharacterized protein, similar to the N-terminal domain of Lon protease, at 559,828 to 560,412
_0506
Psest_0507: Psest_0507 - Uncharacterized membrane-associated protein, at 560,440 to 561,759
_0507
Psest_0508: Psest_0508 - gamma-glutamyl phosphate reductase, at 561,976 to 563,241
_0508
Position (kb) 560
561
562 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 559.859 kb on + strand at 559.860 kb on - strand at 559.860 kb on - strand at 559.860 kb on - strand at 559.860 kb on - strand at 559.906 kb on + strand, within Psest_0506 at 559.907 kb on - strand, within Psest_0506 at 559.955 kb on + strand, within Psest_0506 at 559.955 kb on + strand, within Psest_0506 at 559.956 kb on - strand, within Psest_0506 at 560.299 kb on + strand, within Psest_0506 at 560.453 kb on + strand at 560.453 kb on + strand at 560.454 kb on - strand at 560.454 kb on - strand at 560.654 kb on + strand, within Psest_0507 at 560.654 kb on + strand, within Psest_0507 at 560.655 kb on - strand, within Psest_0507 at 560.805 kb on - strand, within Psest_0507 at 560.805 kb on - strand, within Psest_0507 at 560.956 kb on + strand, within Psest_0507 at 560.956 kb on + strand, within Psest_0507 at 560.957 kb on - strand, within Psest_0507 at 561.211 kb on + strand, within Psest_0507 at 561.212 kb on - strand, within Psest_0507 at 561.212 kb on - strand, within Psest_0507 at 561.288 kb on - strand, within Psest_0507 at 561.288 kb on - strand, within Psest_0507 at 561.288 kb on - strand, within Psest_0507 at 561.440 kb on + strand, within Psest_0507 at 561.440 kb on + strand, within Psest_0507 at 561.440 kb on + strand, within Psest_0507 at 561.441 kb on - strand, within Psest_0507 at 561.441 kb on - strand, within Psest_0507 at 561.763 kb on + strand at 561.800 kb on + strand at 561.800 kb on + strand at 561.801 kb on - strand at 561.801 kb on - strand at 561.935 kb on + strand at 561.935 kb on + strand at 561.935 kb on + strand at 561.935 kb on + strand at 561.935 kb on + strand at 561.935 kb on + strand at 561.935 kb on + strand at 561.935 kb on + strand at 561.935 kb on + strand at 561.935 kb on + strand at 561.935 kb on + strand at 561.935 kb on + strand at 561.935 kb on + strand at 561.935 kb on + strand at 561.935 kb on + strand at 561.935 kb on + strand at 561.935 kb on + strand at 561.935 kb on + strand at 561.936 kb on - strand at 561.936 kb on - strand at 561.936 kb on - strand at 561.936 kb on - strand at 561.936 kb on - strand at 561.936 kb on - strand at 561.936 kb on - strand at 561.936 kb on - strand at 561.936 kb on - strand at 561.936 kb on - strand at 561.936 kb on - strand at 561.936 kb on - strand at 561.936 kb on - strand at 561.936 kb on - strand at 561.936 kb on - strand at 561.936 kb on - strand at 561.936 kb on - strand at 561.936 kb on - strand at 561.936 kb on - strand at 561.936 kb on - strand at 561.936 kb on - strand at 561.937 kb on + strand at 561.969 kb on + strand at 561.969 kb on + strand at 561.969 kb on + strand at 561.969 kb on + strand at 561.997 kb on + strand at 561.997 kb on + strand at 561.997 kb on + strand at 562.248 kb on + strand, within Psest_0508 at 562.248 kb on + strand, within Psest_0508 at 562.288 kb on + strand, within Psest_0508 at 562.288 kb on + strand, within Psest_0508 at 562.288 kb on + strand, within Psest_0508 at 562.351 kb on + strand, within Psest_0508 at 562.351 kb on + strand, within Psest_0508 at 562.351 kb on + strand, within Psest_0508 at 562.351 kb on + strand, within Psest_0508 at 562.678 kb on + strand, within Psest_0508 at 562.678 kb on + strand, within Psest_0508 at 562.678 kb on + strand, within Psest_0508 at 562.678 kb on + strand, within Psest_0508 at 562.678 kb on + strand, within Psest_0508 at 562.678 kb on + strand, within Psest_0508 at 562.678 kb on + strand, within Psest_0508 at 562.678 kb on + strand, within Psest_0508 at 562.678 kb on + strand, within Psest_0508 at 562.678 kb on + strand, within Psest_0508 at 562.678 kb on + strand, within Psest_0508 at 562.678 kb on + strand, within Psest_0508
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate/ lactate media with Nitrate 50mM remove 559,859 + -0.0 559,860 - +0.9 559,860 - +0.0 559,860 - +0.5 559,860 - -0.7 559,906 + Psest_0506 0.13 +0.1 559,907 - Psest_0506 0.14 -0.2 559,955 + Psest_0506 0.22 +0.8 559,955 + Psest_0506 0.22 +0.3 559,956 - Psest_0506 0.22 -2.2 560,299 + Psest_0506 0.81 -0.9 560,453 + +0.1 560,453 + +1.1 560,454 - +3.1 560,454 - -1.6 560,654 + Psest_0507 0.16 +1.1 560,654 + Psest_0507 0.16 +0.3 560,655 - Psest_0507 0.16 +1.3 560,805 - Psest_0507 0.28 -0.7 560,805 - Psest_0507 0.28 +1.1 560,956 + Psest_0507 0.39 +0.3 560,956 + Psest_0507 0.39 +2.1 560,957 - Psest_0507 0.39 -0.2 561,211 + Psest_0507 0.58 +0.8 561,212 - Psest_0507 0.58 +0.3 561,212 - Psest_0507 0.58 -1.7 561,288 - Psest_0507 0.64 -0.4 561,288 - Psest_0507 0.64 -0.5 561,288 - Psest_0507 0.64 -1.2 561,440 + Psest_0507 0.76 -1.8 561,440 + Psest_0507 0.76 +0.1 561,440 + Psest_0507 0.76 -1.6 561,441 - Psest_0507 0.76 -2.0 561,441 - Psest_0507 0.76 -0.6 561,763 + +0.7 561,800 + +0.8 561,800 + -0.2 561,801 - -0.7 561,801 - +0.5 561,935 + -0.4 561,935 + +1.1 561,935 + -1.6 561,935 + +0.2 561,935 + +0.2 561,935 + +1.5 561,935 + -0.1 561,935 + +0.1 561,935 + +0.9 561,935 + +0.1 561,935 + +1.5 561,935 + +0.1 561,935 + -0.9 561,935 + -0.4 561,935 + +0.8 561,935 + -0.1 561,935 + -0.0 561,935 + +0.3 561,936 - -0.1 561,936 - -1.4 561,936 - -1.1 561,936 - +1.3 561,936 - -2.2 561,936 - +0.1 561,936 - -0.5 561,936 - -0.6 561,936 - +0.9 561,936 - -0.1 561,936 - -0.5 561,936 - +1.1 561,936 - +0.5 561,936 - -0.4 561,936 - +0.2 561,936 - +0.8 561,936 - -0.2 561,936 - +1.1 561,936 - +0.1 561,936 - +0.1 561,936 - -0.1 561,937 + -1.1 561,969 + -0.4 561,969 + +1.1 561,969 + -0.1 561,969 + -0.8 561,997 + -0.5 561,997 + -1.8 561,997 + -1.8 562,248 + Psest_0508 0.21 -1.4 562,248 + Psest_0508 0.21 -2.8 562,288 + Psest_0508 0.25 -1.5 562,288 + Psest_0508 0.25 -2.4 562,288 + Psest_0508 0.25 -2.0 562,351 + Psest_0508 0.30 -0.8 562,351 + Psest_0508 0.30 -0.2 562,351 + Psest_0508 0.30 -3.7 562,351 + Psest_0508 0.30 -1.6 562,678 + Psest_0508 0.55 -0.5 562,678 + Psest_0508 0.55 -0.7 562,678 + Psest_0508 0.55 -1.6 562,678 + Psest_0508 0.55 -1.1 562,678 + Psest_0508 0.55 -1.4 562,678 + Psest_0508 0.55 -1.7 562,678 + Psest_0508 0.55 -2.2 562,678 + Psest_0508 0.55 -1.8 562,678 + Psest_0508 0.55 -0.2 562,678 + Psest_0508 0.55 -1.1 562,678 + Psest_0508 0.55 -1.3 562,678 + Psest_0508 0.55 -1.6
Or see this region's nucleotide sequence