Experiment: Nitrate/ lactate media with Nitrate 50mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4145 and Psest_4146 are separated by 8 nucleotides Psest_4146 and Psest_4147 are separated by 12 nucleotides Psest_4147 and Psest_4148 overlap by 1 nucleotides
Psest_4145: Psest_4145 - Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains), at 4,328,716 to 4,329,828
_4145
Psest_4146: Psest_4146 - Flagellar basal-body P-ring protein, at 4,329,837 to 4,330,949
_4146
Psest_4147: Psest_4147 - Flagellar basal body L-ring protein, at 4,330,962 to 4,331,630
_4147
Psest_4148: Psest_4148 - flagellar basal-body rod protein FlgG, Gram-negative bacteria, at 4,331,630 to 4,332,415
_4148
Position (kb) 4329
4330
4331 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4329.144 kb on - strand, within Psest_4145 at 4329.200 kb on + strand, within Psest_4145 at 4329.224 kb on + strand, within Psest_4145 at 4329.224 kb on + strand, within Psest_4145 at 4329.225 kb on - strand, within Psest_4145 at 4329.225 kb on - strand, within Psest_4145 at 4329.614 kb on + strand, within Psest_4145 at 4329.614 kb on + strand, within Psest_4145 at 4329.615 kb on - strand, within Psest_4145 at 4329.838 kb on + strand at 4329.838 kb on + strand at 4329.838 kb on + strand at 4329.838 kb on + strand at 4329.838 kb on + strand at 4329.838 kb on + strand at 4329.838 kb on + strand at 4329.838 kb on + strand at 4329.839 kb on - strand at 4330.312 kb on + strand, within Psest_4146 at 4330.312 kb on + strand, within Psest_4146 at 4330.313 kb on - strand, within Psest_4146 at 4330.313 kb on - strand, within Psest_4146 at 4330.313 kb on - strand, within Psest_4146 at 4330.534 kb on + strand, within Psest_4146 at 4330.534 kb on + strand, within Psest_4146 at 4330.535 kb on - strand, within Psest_4146 at 4330.535 kb on - strand, within Psest_4146 at 4330.645 kb on + strand, within Psest_4146 at 4330.646 kb on - strand, within Psest_4146 at 4330.646 kb on - strand, within Psest_4146 at 4330.646 kb on - strand, within Psest_4146 at 4331.089 kb on + strand, within Psest_4147 at 4331.134 kb on + strand, within Psest_4147 at 4331.134 kb on + strand, within Psest_4147 at 4331.134 kb on + strand, within Psest_4147 at 4331.135 kb on - strand, within Psest_4147 at 4331.135 kb on - strand, within Psest_4147 at 4331.135 kb on - strand, within Psest_4147 at 4331.135 kb on - strand, within Psest_4147 at 4331.135 kb on - strand, within Psest_4147 at 4331.513 kb on - strand, within Psest_4147 at 4331.513 kb on - strand, within Psest_4147 at 4331.534 kb on - strand, within Psest_4147 at 4331.534 kb on - strand, within Psest_4147 at 4331.534 kb on - strand, within Psest_4147 at 4331.697 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate/ lactate media with Nitrate 50mM remove 4,329,144 - Psest_4145 0.38 +0.3 4,329,200 + Psest_4145 0.43 +0.3 4,329,224 + Psest_4145 0.46 -0.3 4,329,224 + Psest_4145 0.46 -0.2 4,329,225 - Psest_4145 0.46 -0.1 4,329,225 - Psest_4145 0.46 +0.8 4,329,614 + Psest_4145 0.81 +0.8 4,329,614 + Psest_4145 0.81 +0.5 4,329,615 - Psest_4145 0.81 -0.0 4,329,838 + +0.5 4,329,838 + +0.5 4,329,838 + +2.1 4,329,838 + -1.0 4,329,838 + +0.5 4,329,838 + -0.6 4,329,838 + -0.6 4,329,838 + +0.5 4,329,839 - +0.2 4,330,312 + Psest_4146 0.43 -0.2 4,330,312 + Psest_4146 0.43 -0.9 4,330,313 - Psest_4146 0.43 -0.8 4,330,313 - Psest_4146 0.43 +1.9 4,330,313 - Psest_4146 0.43 -1.2 4,330,534 + Psest_4146 0.63 -0.5 4,330,534 + Psest_4146 0.63 -0.5 4,330,535 - Psest_4146 0.63 -1.0 4,330,535 - Psest_4146 0.63 -1.9 4,330,645 + Psest_4146 0.73 -0.6 4,330,646 - Psest_4146 0.73 +1.6 4,330,646 - Psest_4146 0.73 -0.9 4,330,646 - Psest_4146 0.73 -0.9 4,331,089 + Psest_4147 0.19 -0.2 4,331,134 + Psest_4147 0.26 +1.7 4,331,134 + Psest_4147 0.26 -2.1 4,331,134 + Psest_4147 0.26 +1.4 4,331,135 - Psest_4147 0.26 +0.1 4,331,135 - Psest_4147 0.26 +0.8 4,331,135 - Psest_4147 0.26 -0.5 4,331,135 - Psest_4147 0.26 +0.3 4,331,135 - Psest_4147 0.26 +0.8 4,331,513 - Psest_4147 0.82 +0.1 4,331,513 - Psest_4147 0.82 -1.1 4,331,534 - Psest_4147 0.86 -0.1 4,331,534 - Psest_4147 0.86 -0.2 4,331,534 - Psest_4147 0.86 -0.4 4,331,697 + -1.7
Or see this region's nucleotide sequence