Strain Fitness in Pantoea sp. MT58 around IAI47_21350

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,266	+		IAI47_21340	0.72	-0.3
3,327	-		IAI47_21340	0.77	+1.3
3,358	+		IAI47_21340	0.80	+0.9
3,359	-		IAI47_21340	0.80	+1.8
3,359	-		IAI47_21340	0.80	+1.5
3,378	+		IAI47_21340	0.81	-0.7
3,378	+		IAI47_21340	0.81	-0.8
3,378	+		IAI47_21340	0.81	+1.1
3,379	-		IAI47_21340	0.81	+0.5
3,379	-		IAI47_21340	0.81	-1.1
3,379	-		IAI47_21340	0.81	+1.2
3,383	+		IAI47_21340	0.82	+1.6
3,383	+		IAI47_21340	0.82	+0.6
3,383	+		IAI47_21340	0.82	+2.5
3,383	+		IAI47_21340	0.82	-1.9
3,383	+		IAI47_21340	0.82	+0.9
3,383	+		IAI47_21340	0.82	-0.2
3,383	+		IAI47_21340	0.82	+1.2
3,383	+		IAI47_21340	0.82	-0.1
3,383	+		IAI47_21340	0.82	+0.9
3,383	+		IAI47_21340	0.82	+0.2
3,383	+		IAI47_21340	0.82	+2.1
3,384	-		IAI47_21340	0.82	-0.8
3,384	-		IAI47_21340	0.82	+1.1
3,384	-		IAI47_21340	0.82	+0.5
3,384	-		IAI47_21340	0.82	-0.7
3,384	-		IAI47_21340	0.82	+1.3
3,384	-		IAI47_21340	0.82	+1.2
3,384	-		IAI47_21340	0.82	-2.1
3,384	-		IAI47_21340	0.82	+0.8
3,384	-		IAI47_21340	0.82	+1.3
3,415	+		IAI47_21340	0.84	-0.2
3,415	+		IAI47_21340	0.84	+0.1
3,416	-		IAI47_21340	0.85	+1.5
3,474	-		IAI47_21340	0.89	+1.4
3,474	-		IAI47_21340	0.89	-0.3
3,474	-		IAI47_21340	0.89	+0.1
3,477	+		IAI47_21340	0.90	+0.2
3,478	-		IAI47_21340	0.90	+1.8
3,480	+		IAI47_21340	0.90	+0.3
3,481	-				-0.8
3,481	-				-1.0
3,507	-				-0.5
3,507	-				+1.4
3,510	+				-0.8
3,510	+				-0.6
3,510	+				-0.3
3,511	-				+0.5
3,569	+				+0.9
3,569	+				-2.3
3,570	-				+1.5
3,570	-				-0.5
3,570	-				+0.8
3,570	-				-0.8
3,570	-				+1.0
3,585	+				-1.1
3,585	+				+0.5
3,585	+				-2.1
3,585	+				+0.4
3,585	+				-0.1
3,586	-				+1.3
3,586	-				+0.2
3,590	+				+0.5
3,591	-				-1.6
3,614	+				+0.8
3,614	+				-2.1
3,614	+				+0.6
3,614	+				+0.6
3,614	+				+0.5
3,614	+				+0.6
3,614	+				+0.7
3,614	+				+1.4
3,614	+				+2.5
3,614	+				+0.3
3,614	+				+3.1
3,615	-				+0.8
3,615	-				+0.4
3,615	-				-0.2
3,615	-				+0.3
3,615	-				+0.3
3,616	+				+0.4
3,616	+				-0.7
3,616	+				-1.5
3,617	-				+0.3
3,617	-				+1.4
3,617	-				+0.5
3,617	-				+1.7
3,617	-				+2.8
3,617	-				+1.4
3,629	+				+1.4
3,636	+				+0.7
3,636	+				-1.2
3,637	-				+0.3
3,649	+				+0.2
3,649	+				+0.9
3,649	+				+0.5
3,649	+				+0.2
3,650	-				-1.3
3,650	-				-0.2
3,664	+				+0.7
3,665	-				-1.1
3,665	-				+1.1
3,665	-				-1.7
3,668	+				+0.8
3,668	+				-0.6
3,669	-				-0.8
3,669	-				+1.5
3,669	-				+1.4
3,669	-				+1.4
3,669	-				+0.1
3,707	+				-1.0
3,707	+				-0.3
3,707	+				+1.9
3,707	+				-0.5
3,713	+				+0.3
3,741	+				-1.0
3,754	+				-0.5
3,754	+				+0.6
3,755	-				+1.1
3,755	-				+0.1
3,755	-				-2.0
3,757	+				+1.6
3,795	+				+2.5
3,795	+				+0.9
3,795	+				+0.6
3,796	-				+1.8
3,796	-				+2.1
3,796	-				+0.3
3,796	-				-0.4
3,796	-				-0.2
3,796	-				-0.5
3,796	-				-0.5
3,796	-				+0.8
3,796	-				+0.5
3,799	+				-0.3
3,799	+				-0.8
3,799	+				+1.9
3,799	+				+1.1
3,799	+				-1.5
3,799	+				+0.7
3,800	-				-2.0
3,800	-				-1.4
3,800	-				+0.8
3,800	-				+0.5
3,800	-				+0.7
3,800	-				-0.9
3,800	-				+0.7
3,800	-				-1.1
3,800	-				+0.4
3,802	+				+0.1
3,802	+				+0.1
3,817	+				+1.6
3,817	+				+0.1
3,817	+				+0.2
3,834	+				-1.2
3,835	-				-0.6
3,835	-				+0.1
3,837	+				-1.6
3,838	-				+1.7
3,838	-				-0.1
3,846	-				-1.0
3,853	-				+0.8
3,853	-				+0.2
3,856	+				-1.1
3,856	+				-0.0
3,856	+				+1.1
3,856	+				+2.1
3,857	-				+1.9
3,857	-				+1.5
3,876	+		IAI47_21345	0.12	+0.6
3,876	+		IAI47_21345	0.12	+0.5
3,877	-		IAI47_21345	0.13	+0.1
3,877	-		IAI47_21345	0.13	+0.7
3,910	+		IAI47_21345	0.29	+0.7
3,910	+		IAI47_21345	0.29	-0.2
3,911	-		IAI47_21345	0.29	-1.3
3,912	+		IAI47_21345	0.29	+0.3
3,913	-		IAI47_21345	0.30	-0.1
3,913	-		IAI47_21345	0.30	-2.2
3,913	-		IAI47_21345	0.30	-1.0
3,988	+		IAI47_21345	0.66	+1.5
3,988	+		IAI47_21345	0.66	+0.2
3,988	+		IAI47_21345	0.66	+1.1
3,988	+		IAI47_21345	0.66	+0.9
3,988	+		IAI47_21345	0.66	-1.1
3,988	+		IAI47_21345	0.66	+0.8
3,989	-		IAI47_21345	0.67	+2.3
3,989	-		IAI47_21345	0.67	+2.5
3,989	-		IAI47_21345	0.67	+0.5
3,989	-		IAI47_21345	0.67	-0.4
3,989	-		IAI47_21345	0.67	-2.2
3,989	-		IAI47_21345	0.67	-0.4
3,989	-		IAI47_21345	0.67	+0.4
3,989	-		IAI47_21345	0.67	-1.0
3,989	-		IAI47_21345	0.67	+0.8
3,989	-		IAI47_21345	0.67	-0.2
4,006	+		IAI47_21345	0.75	-1.5
4,109	-				-0.7
4,256	+				+1.4
4,256	+				+1.8
4,256	+				-0.6
4,257	-				-1.6
4,273	+				-0.7
4,273	+				-1.2
4,273	+				+0.3
4,273	+				+0.3
4,274	-				+1.2
4,274	-				+0.3
4,274	-				+1.4
4,325	+				+2.5
4,325	+				+1.1
4,325	+				+1.8
4,325	+				+0.9
4,326	-				+1.0
4,326	-				-0.3
4,332	-				+1.6
4,332	-				-0.2
4,355	+				+0.4
4,355	+				+0.5
4,355	+				+0.8
4,390	+				-0.5
4,390	+				+1.2
4,390	+				+0.5
4,390	+				+1.5
4,390	+				-1.1
4,391	-				+0.9
4,391	-				+0.7
4,410	+				+1.7
4,410	+				-1.1
4,411	-				-0.3
4,411	-				-0.6
4,412	+				+0.5
4,413	-				+1.2
4,413	-				+0.8
4,443	+		IAI47_21350	0.11	-1.2
4,443	+		IAI47_21350	0.11	+2.9
4,468	-		IAI47_21350	0.12	-0.2
4,506	+		IAI47_21350	0.14	-0.6
4,506	+		IAI47_21350	0.14	+0.8
4,506	+		IAI47_21350	0.14	-0.2
4,506	+		IAI47_21350	0.14	-0.5
4,506	+		IAI47_21350	0.14	+0.7
4,506	+		IAI47_21350	0.14	+0.4
4,507	-		IAI47_21350	0.14	+0.9
4,507	-		IAI47_21350	0.14	+1.4
4,507	-		IAI47_21350	0.14	-0.2
4,535	+		IAI47_21350	0.16	-1.8
4,535	+		IAI47_21350	0.16	+1.0
4,535	+		IAI47_21350	0.16	-0.5
4,536	-		IAI47_21350	0.16	+1.5
4,536	-		IAI47_21350	0.16	+0.5
4,545	+		IAI47_21350	0.16	+1.3
4,545	+		IAI47_21350	0.16	+2.4
4,546	-		IAI47_21350	0.16	-1.1
4,546	-		IAI47_21350	0.16	+2.8
4,546	-		IAI47_21350	0.16	-1.0
4,597	+		IAI47_21350	0.19	+1.2
4,598	-		IAI47_21350	0.19	-0.6
4,638	+		IAI47_21350	0.21	+0.5
4,639	-		IAI47_21350	0.22	-2.2
4,639	-		IAI47_21350	0.22	+0.1
4,639	-		IAI47_21350	0.22	-1.5
4,639	-		IAI47_21350	0.22	+0.5
4,749	+		IAI47_21350	0.28	-1.5
4,750	-		IAI47_21350	0.28	-0.7
4,756	+		IAI47_21350	0.28	+1.5
4,756	+		IAI47_21350	0.28	+1.9
4,757	-		IAI47_21350	0.28	+1.1
4,757	-		IAI47_21350	0.28	+1.5
4,777	-		IAI47_21350	0.29	-0.2
4,777	-		IAI47_21350	0.29	-0.2
4,782	+		IAI47_21350	0.30	-0.1
4,782	+		IAI47_21350	0.30	+0.3
4,782	+		IAI47_21350	0.30	+1.7
4,782	+		IAI47_21350	0.30	-0.8
4,783	-		IAI47_21350	0.30	+0.8
4,785	+		IAI47_21350	0.30	+2.0
4,786	-		IAI47_21350	0.30	+1.1
4,786	-		IAI47_21350	0.30	+0.2
4,837	+		IAI47_21350	0.33	-0.6
4,838	-		IAI47_21350	0.33	+0.2
4,838	-		IAI47_21350	0.33	-0.1
4,846	+		IAI47_21350	0.33	+0.1
4,846	+		IAI47_21350	0.33	+1.5
4,846	+		IAI47_21350	0.33	+1.8
4,846	+		IAI47_21350	0.33	-0.3
4,847	-		IAI47_21350	0.33	-1.1
4,847	-		IAI47_21350	0.33	+2.1
4,847	-		IAI47_21350	0.33	-0.2
4,847	-		IAI47_21350	0.33	-0.7
4,921	-		IAI47_21350	0.37	+1.4
4,921	-		IAI47_21350	0.37	-0.1
4,945	-		IAI47_21350	0.39	-0.2
4,973	+		IAI47_21350	0.40	+0.5
4,973	+		IAI47_21350	0.40	-0.2
4,973	+		IAI47_21350	0.40	-0.2
4,974	-		IAI47_21350	0.40	-0.8
4,974	-		IAI47_21350	0.40	+0.7
4,974	-		IAI47_21350	0.40	+1.4
4,974	-		IAI47_21350	0.40	+2.3
4,974	-		IAI47_21350	0.40	+0.3
4,974	-		IAI47_21350	0.40	-1.1
4,974	-		IAI47_21350	0.40	+0.2
4,982	+		IAI47_21350	0.41	-0.4
4,982	+		IAI47_21350	0.41	-0.7
4,982	+		IAI47_21350	0.41	+0.3
4,982	+		IAI47_21350	0.41	-0.2
4,982	+		IAI47_21350	0.41	-1.5
4,982	+		IAI47_21350	0.41	+0.5
4,982	+		IAI47_21350	0.41	+0.8
4,982	+		IAI47_21350	0.41	+0.2
4,982	+		IAI47_21350	0.41	-0.2
4,982	+		IAI47_21350	0.41	-2.1
4,982	+		IAI47_21350	0.41	+2.1
4,982	+		IAI47_21350	0.41	+0.9
4,982	+		IAI47_21350	0.41	+0.3
4,982	+		IAI47_21350	0.41	+1.0
4,982	+		IAI47_21350	0.41	+1.7
4,982	+		IAI47_21350	0.41	+1.4
4,982	+		IAI47_21350	0.41	-0.3
4,983	-		IAI47_21350	0.41	+1.5
4,983	-		IAI47_21350	0.41	+1.3
4,983	-		IAI47_21350	0.41	+0.5
4,983	-		IAI47_21350	0.41	-0.1
4,983	-		IAI47_21350	0.41	+1.5
4,983	-		IAI47_21350	0.41	+0.5
4,983	-		IAI47_21350	0.41	-0.9
4,983	-		IAI47_21350	0.41	+1.0
4,983	-		IAI47_21350	0.41	-0.2
4,983	-		IAI47_21350	0.41	-0.6
4,983	-		IAI47_21350	0.41	-0.1
4,983	-		IAI47_21350	0.41	+0.1
4,983	-		IAI47_21350	0.41	+1.1
4,993	-		IAI47_21350	0.41	+1.2
5,002	+		IAI47_21350	0.42	-0.6
5,002	+		IAI47_21350	0.42	+0.9
5,003	-		IAI47_21350	0.42	+1.4
5,014	-		IAI47_21350	0.43	+0.2
5,064	+		IAI47_21350	0.45	+0.5
5,065	-		IAI47_21350	0.45	-0.1
5,067	+		IAI47_21350	0.45	+2.9
5,068	-		IAI47_21350	0.46	+0.5
5,068	-		IAI47_21350	0.46	+0.4
5,068	-		IAI47_21350	0.46	+1.8
5,068	-		IAI47_21350	0.46	-0.1
5,068	-		IAI47_21350	0.46	+2.6
5,129	-		IAI47_21350	0.49	-0.5
5,131	+		IAI47_21350	0.49	+1.8
5,178	+		IAI47_21350	0.52	+0.4
5,178	+		IAI47_21350	0.52	+0.5
5,178	+		IAI47_21350	0.52	+1.0
5,179	-		IAI47_21350	0.52	-0.6
5,227	-		IAI47_21350	0.54	+1.8
5,227	-		IAI47_21350	0.54	-0.2
5,310	+		IAI47_21350	0.59	-1.4
5,311	-		IAI47_21350	0.59	+1.3
5,311	-		IAI47_21350	0.59	+1.8
5,312	+		IAI47_21350	0.59	+1.3
5,312	+		IAI47_21350	0.59	+0.5
5,312	+		IAI47_21350	0.59	+4.3
5,312	+		IAI47_21350	0.59	-0.1
5,312	+		IAI47_21350	0.59	+0.5
5,312	+		IAI47_21350	0.59	+0.9
5,313	-		IAI47_21350	0.59	+0.7
5,313	-		IAI47_21350	0.59	+2.0
5,313	-		IAI47_21350	0.59	+2.1
5,313	-		IAI47_21350	0.59	+0.7
5,313	-		IAI47_21350	0.59	-0.1
5,313	-		IAI47_21350	0.59	-0.6
5,350	+		IAI47_21350	0.61	+1.5
5,350	+		IAI47_21350	0.61	+2.1
5,351	-		IAI47_21350	0.61	+0.9
5,351	-		IAI47_21350	0.61	+1.0
5,353	+		IAI47_21350	0.62	-0.5
5,353	+		IAI47_21350	0.62	+1.3
5,353	+		IAI47_21350	0.62	-0.7
5,354	-		IAI47_21350	0.62	-0.4
5,354	-		IAI47_21350	0.62	+1.2
5,354	-		IAI47_21350	0.62	-0.2
5,354	-		IAI47_21350	0.62	+1.3
5,354	-		IAI47_21350	0.62	-0.2
5,364	+		IAI47_21350	0.62	+0.8
5,364	+		IAI47_21350	0.62	+0.3
5,365	-		IAI47_21350	0.62	+2.6
5,365	-		IAI47_21350	0.62	+0.4
5,365	-		IAI47_21350	0.62	+0.3
5,365	-		IAI47_21350	0.62	-2.2
5,371	+		IAI47_21350	0.63	+0.3
5,417	+		IAI47_21350	0.65	+1.1
5,430	+		IAI47_21350	0.66	+1.4
5,430	+		IAI47_21350	0.66	+1.5
5,430	+		IAI47_21350	0.66	+3.5
5,430	+		IAI47_21350	0.66	-0.2
5,430	+		IAI47_21350	0.66	-0.7
5,430	+		IAI47_21350	0.66	-0.2
5,430	+		IAI47_21350	0.66	-0.8
5,430	+		IAI47_21350	0.66	+0.5
5,430	+		IAI47_21350	0.66	+1.1
5,430	+		IAI47_21350	0.66	+1.4
5,431	-		IAI47_21350	0.66	-0.7
5,431	-		IAI47_21350	0.66	+0.0
5,431	-		IAI47_21350	0.66	-1.0
5,431	-		IAI47_21350	0.66	+1.0
5,431	-		IAI47_21350	0.66	+0.6
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