Strain Fitness in Pantoea sp. MT58 around IAI47_17930

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,805,655	+		IAI47_17925	0.15	-0.5
3,805,656	-		IAI47_17925	0.15	+1.3
3,805,656	-		IAI47_17925	0.15	-1.2
3,805,656	-		IAI47_17925	0.15	+1.3
3,805,680	+		IAI47_17925	0.18	+0.0
3,805,680	+		IAI47_17925	0.18	+0.4
3,805,680	+		IAI47_17925	0.18	+1.0
3,805,681	-		IAI47_17925	0.18	-1.1
3,805,681	-		IAI47_17925	0.18	+1.6
3,805,681	-		IAI47_17925	0.18	-1.2
3,805,681	-		IAI47_17925	0.18	-0.9
3,805,681	-		IAI47_17925	0.18	+0.2
3,805,681	-		IAI47_17925	0.18	+1.0
3,805,688	+		IAI47_17925	0.18	-3.0
3,805,688	+		IAI47_17925	0.18	+1.5
3,805,689	-		IAI47_17925	0.18	+1.0
3,805,689	-		IAI47_17925	0.18	+2.2
3,805,706	+		IAI47_17925	0.20	-0.9
3,805,706	+		IAI47_17925	0.20	+1.4
3,805,706	+		IAI47_17925	0.20	+0.1
3,805,706	+		IAI47_17925	0.20	+0.5
3,805,706	+		IAI47_17925	0.20	+0.6
3,805,706	+		IAI47_17925	0.20	+0.2
3,805,706	+		IAI47_17925	0.20	+0.6
3,805,707	-		IAI47_17925	0.20	-0.1
3,805,707	-		IAI47_17925	0.20	+0.0
3,805,707	-		IAI47_17925	0.20	-1.7
3,805,816	+		IAI47_17925	0.30	-0.5
3,805,817	-		IAI47_17925	0.30	+1.2
3,805,817	-		IAI47_17925	0.30	+0.2
3,805,827	+		IAI47_17925	0.31	+0.7
3,805,827	+		IAI47_17925	0.31	+1.0
3,805,871	+		IAI47_17925	0.35	-1.2
3,805,871	+		IAI47_17925	0.35	+0.2
3,805,871	+		IAI47_17925	0.35	-0.1
3,805,872	-		IAI47_17925	0.36	+0.8
3,805,872	-		IAI47_17925	0.36	+0.2
3,805,872	-		IAI47_17925	0.36	+0.8
3,805,880	+		IAI47_17925	0.36	+1.3
3,805,880	+		IAI47_17925	0.36	+1.3
3,805,880	+		IAI47_17925	0.36	+2.2
3,805,881	-		IAI47_17925	0.36	-1.3
3,805,881	-		IAI47_17925	0.36	-1.3
3,805,881	-		IAI47_17925	0.36	-0.2
3,805,896	+		IAI47_17925	0.38	+0.4
3,805,896	+		IAI47_17925	0.38	-1.0
3,805,896	+		IAI47_17925	0.38	+1.9
3,805,896	+		IAI47_17925	0.38	-0.9
3,805,896	+		IAI47_17925	0.38	-0.8
3,805,896	+		IAI47_17925	0.38	+0.4
3,805,897	-		IAI47_17925	0.38	+1.2
3,805,897	-		IAI47_17925	0.38	-0.7
3,805,897	-		IAI47_17925	0.38	-2.0
3,805,897	-		IAI47_17925	0.38	-1.9
3,805,898	+		IAI47_17925	0.38	-2.2
3,805,898	+		IAI47_17925	0.38	-0.4
3,805,898	+		IAI47_17925	0.38	-0.4
3,805,899	-		IAI47_17925	0.38	-2.1
3,805,899	-		IAI47_17925	0.38	+1.0
3,805,899	-		IAI47_17925	0.38	+1.8
3,805,899	-		IAI47_17925	0.38	+1.5
3,805,937	+		IAI47_17925	0.42	-2.7
3,805,937	+		IAI47_17925	0.42	-0.8
3,805,938	-		IAI47_17925	0.42	-0.7
3,805,943	+		IAI47_17925	0.42	-0.4
3,805,943	+		IAI47_17925	0.42	-1.6
3,805,943	+		IAI47_17925	0.42	-1.1
3,805,944	-		IAI47_17925	0.42	-2.0
3,805,944	-		IAI47_17925	0.42	+0.4
3,805,976	+		IAI47_17925	0.45	+3.4
3,805,977	-		IAI47_17925	0.45	-0.7
3,805,977	-		IAI47_17925	0.45	-0.3
3,805,977	-		IAI47_17925	0.45	-1.2
3,805,977	-		IAI47_17925	0.45	-1.6
3,805,981	-		IAI47_17925	0.46	+0.2
3,805,981	-		IAI47_17925	0.46	+1.9
3,805,981	-		IAI47_17925	0.46	-1.8
3,805,981	-		IAI47_17925	0.46	+1.0
3,805,981	-		IAI47_17925	0.46	+0.1
3,805,988	+		IAI47_17925	0.47	-0.1
3,805,988	+				+1.5
3,805,989	-		IAI47_17925	0.47	+0.2
3,805,992	-		IAI47_17925	0.47	-0.1
3,806,046	+		IAI47_17925	0.52	+0.4
3,806,046	+		IAI47_17925	0.52	-0.3
3,806,046	+		IAI47_17925	0.52	-0.7
3,806,046	+		IAI47_17925	0.52	-1.6
3,806,047	-		IAI47_17925	0.52	+0.8
3,806,054	-		IAI47_17925	0.53	-1.2
3,806,179	+		IAI47_17925	0.65	-0.1
3,806,179	+		IAI47_17925	0.65	-0.4
3,806,180	-		IAI47_17925	0.65	+0.7
3,806,180	-		IAI47_17925	0.65	+0.5
3,806,180	-		IAI47_17925	0.65	+0.6
3,806,201	+		IAI47_17925	0.67	+1.5
3,806,201	+		IAI47_17925	0.67	+0.5
3,806,202	-		IAI47_17925	0.67	-0.7
3,806,206	-		IAI47_17925	0.67	+1.3
3,806,206	-		IAI47_17925	0.67	-0.0
3,806,274	+		IAI47_17925	0.73	+0.1
3,806,295	+		IAI47_17925	0.75	+0.4
3,806,296	-		IAI47_17925	0.76	+2.7
3,806,296	-		IAI47_17925	0.76	+0.4
3,806,334	+		IAI47_17925	0.79	+1.9
3,806,334	+		IAI47_17925	0.79	+0.3
3,806,335	-		IAI47_17925	0.79	+1.1
3,806,335	-		IAI47_17925	0.79	+1.5
3,806,336	+		IAI47_17925	0.79	-1.1
3,806,336	+		IAI47_17925	0.79	+2.3
3,806,336	+		IAI47_17925	0.79	+0.7
3,806,336	+		IAI47_17925	0.79	-2.0
3,806,337	-		IAI47_17925	0.79	-0.4
3,806,337	-		IAI47_17925	0.79	-2.3
3,806,337	-		IAI47_17925	0.79	-0.7
3,806,337	-		IAI47_17925	0.79	-0.7
3,806,337	-		IAI47_17925	0.79	+1.1
3,806,337	-		IAI47_17925	0.79	+0.6
3,806,377	-		IAI47_17925	0.83	-1.8
3,806,453	+				-0.3
3,806,453	+				-1.8
3,806,453	+				-0.1
3,806,454	-				+1.2
3,806,492	+				-0.2
3,806,492	+				-1.1
3,806,492	+				-2.3
3,806,492	+				-0.5
3,806,553	+				+1.0
3,806,553	+				+1.9
3,806,554	-				-2.0
3,806,554	-				-1.5
3,806,592	+				+0.6
3,806,639	+				+1.4
3,806,675	+		IAI47_17930	0.12	+1.9
3,806,675	+		IAI47_17930	0.12	-1.3
3,806,675	+		IAI47_17930	0.12	-0.7
3,806,675	+		IAI47_17930	0.12	+1.6
3,806,675	+		IAI47_17930	0.12	-0.3
3,806,675	+		IAI47_17930	0.12	-0.7
3,806,675	+		IAI47_17930	0.12	+0.3
3,806,675	+		IAI47_17930	0.12	+1.5
3,806,676	-		IAI47_17930	0.12	-0.4
3,806,676	-		IAI47_17930	0.12	+1.0
3,806,678	+		IAI47_17930	0.13	-1.0
3,806,679	-		IAI47_17930	0.13	+0.8
3,806,683	+		IAI47_17930	0.13	+0.5
3,806,684	-		IAI47_17930	0.13	-1.9
3,806,684	-		IAI47_17930	0.13	+0.3
3,806,721	-		IAI47_17930	0.18	+0.1
3,806,764	+		IAI47_17930	0.23	+3.1
3,806,764	+		IAI47_17930	0.23	+0.3
3,806,765	-		IAI47_17930	0.23	+0.9
3,806,765	-		IAI47_17930	0.23	+2.6
3,806,765	-		IAI47_17930	0.23	+0.9
3,806,852	+		IAI47_17930	0.34	+1.3
3,806,852	+		IAI47_17930	0.34	-0.5
3,806,852	+		IAI47_17930	0.34	-2.7
3,806,853	-		IAI47_17930	0.34	-0.7
3,806,873	+		IAI47_17930	0.37	-2.1
3,806,873	+		IAI47_17930	0.37	-0.4
3,806,873	+		IAI47_17930	0.37	-0.9
3,806,873	+		IAI47_17930	0.37	-1.2
3,806,873	+		IAI47_17930	0.37	-2.3
3,806,873	+		IAI47_17930	0.37	-0.3
3,806,874	-		IAI47_17930	0.37	+1.0
3,806,874	-		IAI47_17930	0.37	-1.5
3,806,874	-		IAI47_17930	0.37	+0.2
3,806,874	-		IAI47_17930	0.37	+1.0
3,806,874	-		IAI47_17930	0.37	-0.6
3,806,874	-		IAI47_17930	0.37	+1.3
3,806,951	+		IAI47_17930	0.46	+0.6
3,806,951	+		IAI47_17930	0.46	+0.9
3,806,952	-		IAI47_17930	0.46	-1.4
3,806,962	+		IAI47_17930	0.47	+2.7
3,806,962	+		IAI47_17930	0.47	+0.8
3,806,962	+		IAI47_17930	0.47	+0.3
3,806,962	+		IAI47_17930	0.47	+0.1
3,806,962	+		IAI47_17930	0.47	-0.1
3,806,962	+		IAI47_17930	0.47	-0.9
3,806,962	+		IAI47_17930	0.47	+0.6
3,806,963	-		IAI47_17930	0.48	-1.0
3,806,963	-		IAI47_17930	0.48	-1.5
3,806,963	-		IAI47_17930	0.48	+0.6
3,806,963	-		IAI47_17930	0.48	+2.2
3,806,963	-		IAI47_17930	0.48	+0.5
3,806,963	-		IAI47_17930	0.48	+0.2
3,806,963	-		IAI47_17930	0.48	+2.0
3,806,966	+		IAI47_17930	0.48	+0.7
3,806,966	+		IAI47_17930	0.48	+1.0
3,806,966	+		IAI47_17930	0.48	+1.2
3,806,966	+		IAI47_17930	0.48	+0.7
3,806,966	+		IAI47_17930	0.48	+0.7
3,806,967	-		IAI47_17930	0.48	+0.1
3,806,967	-		IAI47_17930	0.48	+0.2
3,806,967	-		IAI47_17930	0.48	+0.3
3,807,067	+		IAI47_17930	0.60	-1.3
3,807,067	+		IAI47_17930	0.60	-0.4
3,807,067	+		IAI47_17930	0.60	-1.0
3,807,067	+		IAI47_17930	0.60	+1.3
3,807,068	-		IAI47_17930	0.61	-0.8
3,807,068	-		IAI47_17930	0.61	-0.3
3,807,068	-		IAI47_17930	0.61	+0.2
3,807,068	-		IAI47_17930	0.61	-0.2
3,807,109	+		IAI47_17930	0.66	+0.0
3,807,161	+		IAI47_17930	0.72	+2.1
3,807,161	+		IAI47_17930	0.72	+0.9
3,807,162	-		IAI47_17930	0.72	-1.6
3,807,162	-		IAI47_17930	0.72	+1.2
3,807,519	+		IAI47_17935	0.16	-1.2
3,807,519	+		IAI47_17935	0.16	-1.7
3,807,520	-		IAI47_17935	0.16	+1.2
3,807,520	-		IAI47_17935	0.16	+3.0
3,807,520	-		IAI47_17935	0.16	-2.5
3,807,520	-		IAI47_17935	0.16	-2.8
3,807,520	-		IAI47_17935	0.16	+0.6
3,807,523	+		IAI47_17935	0.16	+0.9
3,807,523	+		IAI47_17935	0.16	+0.8
3,807,523	+		IAI47_17935	0.16	-0.7
3,807,523	+		IAI47_17935	0.16	+1.0
3,807,523	+		IAI47_17935	0.16	+0.8
3,807,523	+		IAI47_17935	0.16	-1.0
3,807,524	-		IAI47_17935	0.16	+1.7
3,807,524	-		IAI47_17935	0.16	-1.3
3,807,524	-		IAI47_17935	0.16	+0.4
3,807,524	-		IAI47_17935	0.16	+1.0
3,807,524	-		IAI47_17935	0.16	+0.9
3,807,524	-		IAI47_17935	0.16	+0.0
3,807,524	-		IAI47_17935	0.16	+0.6
3,807,524	-		IAI47_17935	0.16	-0.1
3,807,524	-		IAI47_17935	0.16	+0.3
3,807,524	-		IAI47_17935	0.16	-1.0
3,807,524	-		IAI47_17935	0.16	+0.7
3,807,524	-		IAI47_17935	0.16	-1.4
3,807,550	+		IAI47_17935	0.20	+1.0
3,807,550	+		IAI47_17935	0.20	-2.4
3,807,551	-		IAI47_17935	0.20	+0.8
3,807,551	-		IAI47_17935	0.20	-1.9
3,807,551	-		IAI47_17935	0.20	+0.5
3,807,551	-		IAI47_17935	0.20	-0.5
3,807,551	-		IAI47_17935	0.20	-0.1
3,807,579	+		IAI47_17935	0.23	-1.6
3,807,580	-		IAI47_17935	0.23	+0.0
3,807,580	-		IAI47_17935	0.23	+1.0
3,807,608	+		IAI47_17935	0.26	+3.3
3,807,608	+				+0.6
3,807,634	+		IAI47_17935	0.29	-0.5
3,807,675	+		IAI47_17935	0.34	-0.6
3,807,675	+		IAI47_17935	0.34	+1.1
3,807,676	-		IAI47_17935	0.34	+0.9
3,807,676	-		IAI47_17935	0.34	-0.1
3,807,676	-		IAI47_17935	0.34	-0.3
3,807,676	-		IAI47_17935	0.34	-0.7
3,807,685	-		IAI47_17935	0.35	-2.4
3,807,685	-		IAI47_17935	0.35	-1.0
3,807,685	-		IAI47_17935	0.35	+1.1
3,807,699	+		IAI47_17935	0.37	-0.7
3,807,699	+		IAI47_17935	0.37	+1.3
3,807,700	-		IAI47_17935	0.37	+1.4
3,807,700	-		IAI47_17935	0.37	+1.0
3,807,781	+		IAI47_17935	0.47	+1.1
3,807,781	+		IAI47_17935	0.47	-2.0
3,807,781	+		IAI47_17935	0.47	+0.5
3,807,781	+		IAI47_17935	0.47	+0.2
3,807,781	+		IAI47_17935	0.47	+0.1
3,807,781	+		IAI47_17935	0.47	-1.7
3,807,781	+		IAI47_17935	0.47	-0.1
3,807,781	+		IAI47_17935	0.47	-2.1
3,807,782	-		IAI47_17935	0.47	+1.3
3,807,782	-		IAI47_17935	0.47	+0.6
3,807,827	+		IAI47_17935	0.52	+1.6
3,807,827	+		IAI47_17935	0.52	-3.0
3,807,827	+		IAI47_17935	0.52	+0.7
3,807,828	-		IAI47_17935	0.52	+0.3
3,807,835	+		IAI47_17935	0.53	+0.1
3,807,835	+		IAI47_17935	0.53	+1.7
3,807,836	-		IAI47_17935	0.53	+0.7
3,807,875	-		IAI47_17935	0.58	+0.8
3,807,923	+		IAI47_17935	0.64	-1.1
3,807,923	+		IAI47_17935	0.64	+0.3
3,807,923	+		IAI47_17935	0.64	+1.6
3,807,947	-		IAI47_17935	0.66	-1.3
3,808,030	+		IAI47_17935	0.76	-2.5
3,808,030	+		IAI47_17935	0.76	-0.8
3,808,031	-		IAI47_17935	0.76	-0.2
3,808,042	+		IAI47_17935	0.78	+0.5
3,808,043	-		IAI47_17935	0.78	+0.8
3,808,043	-		IAI47_17935	0.78	+0.0
3,808,059	+		IAI47_17935	0.80	-1.2
3,808,107	+		IAI47_17935	0.85	-0.6
3,808,107	+		IAI47_17935	0.85	-0.3
3,808,108	-		IAI47_17935	0.85	+1.1
3,808,108	-		IAI47_17935	0.85	+0.9
3,808,158	+				+0.6
3,808,159	-				-1.3
3,808,159	-				+2.1
3,808,159	-				+1.3
3,808,159	-				+0.1
3,808,181	+				+1.5
3,808,182	-				-0.7
3,808,182	-				+0.8
3,808,189	+				-1.3
3,808,189	+				+0.7
3,808,189	+				-0.2
3,808,189	+				-0.4
3,808,189	+				+0.6
3,808,189	+				-0.5
3,808,190	-				-0.6
3,808,190	-				-1.8
3,808,190	-				+0.3
3,808,207	+				-1.3
3,808,207	+				-0.4
3,808,208	-				+0.1
3,808,208	-				+0.2
3,808,263	+				+1.8
3,808,263	+				+0.1
3,808,263	+				-1.7
3,808,264	-				-0.1
3,808,264	-				+0.2
3,808,264	-				+1.3
3,808,264	-				-1.3
3,808,264	-				+0.2
3,808,285	+				+2.4
3,808,293	-				+2.6
3,808,293	-				+0.0
3,808,329	+		IAI47_17940	0.11	+1.2
3,808,355	+		IAI47_17940	0.14	+1.0
3,808,355	+		IAI47_17940	0.14	+1.3
3,808,355	+		IAI47_17940	0.14	+0.8
3,808,355	+		IAI47_17940	0.14	-2.6
3,808,355	+		IAI47_17940	0.14	+0.4
3,808,356	-		IAI47_17940	0.15	-1.2
3,808,356	-		IAI47_17940	0.15	-0.9
3,808,374	+		IAI47_17940	0.17	-0.3
3,808,374	+		IAI47_17940	0.17	+2.2