Strain Fitness in Pantoea sp. MT58 around IAI47_16325

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,459,834	+				+0.5
3,459,834	+				-0.5
3,459,838	+				+1.7
3,459,838	+				+0.7
3,459,838	+				-0.5
3,459,838	+				+2.0
3,459,838	+				+0.4
3,459,839	-				-0.3
3,459,839	-				-0.4
3,459,900	+				-0.9
3,459,901	-				+0.4
3,459,978	-		IAI47_16320	0.16	-1.1
3,460,004	+		IAI47_16320	0.20	+0.6
3,460,005	-		IAI47_16320	0.20	-1.0
3,460,015	+		IAI47_16320	0.21	+0.4
3,460,015	+		IAI47_16320	0.21	-1.7
3,460,042	-		IAI47_16320	0.25	-0.0
3,460,051	+		IAI47_16320	0.26	-1.5
3,460,161	+		IAI47_16320	0.40	-1.2
3,460,162	-		IAI47_16320	0.40	-1.9
3,460,171	+		IAI47_16320	0.42	-2.3
3,460,171	+		IAI47_16320	0.42	-0.9
3,460,172	-		IAI47_16320	0.42	+0.8
3,460,173	+		IAI47_16320	0.42	-1.9
3,460,173	+		IAI47_16320	0.42	+1.6
3,460,173	+		IAI47_16320	0.42	-2.2
3,460,173	+		IAI47_16320	0.42	-0.7
3,460,173	+		IAI47_16320	0.42	-0.4
3,460,173	+		IAI47_16320	0.42	+2.1
3,460,174	-		IAI47_16320	0.42	-1.8
3,460,224	+		IAI47_16320	0.48	+0.2
3,460,224	+		IAI47_16320	0.48	-0.7
3,460,225	-		IAI47_16320	0.49	-0.3
3,460,263	+		IAI47_16320	0.54	-1.9
3,460,264	-		IAI47_16320	0.54	-1.3
3,460,264	-		IAI47_16320	0.54	-0.7
3,460,269	+		IAI47_16320	0.54	-1.0
3,460,270	-		IAI47_16320	0.55	+0.5
3,460,270	-		IAI47_16320	0.55	-1.2
3,460,311	+		IAI47_16320	0.60	+1.6
3,460,311	+		IAI47_16320	0.60	+1.1
3,460,311	+		IAI47_16320	0.60	+0.9
3,460,312	-		IAI47_16320	0.60	-0.8
3,460,325	+		IAI47_16320	0.62	+0.8
3,460,408	+		IAI47_16320	0.73	+0.1
3,460,408	+		IAI47_16320	0.73	-1.3
3,460,408	+		IAI47_16320	0.73	-0.1
3,460,408	+		IAI47_16320	0.73	-0.5
3,460,408	+		IAI47_16320	0.73	+0.9
3,460,408	+		IAI47_16320	0.73	-0.4
3,460,408	+		IAI47_16320	0.73	-0.3
3,460,408	+		IAI47_16320	0.73	-0.1
3,460,408	+		IAI47_16320	0.73	+0.4
3,460,485	+		IAI47_16320	0.83	+0.4
3,460,485	+		IAI47_16320	0.83	-0.9
3,460,485	+		IAI47_16320	0.83	-0.9
3,460,485	+		IAI47_16320	0.83	-2.4
3,460,485	+		IAI47_16320	0.83	-2.0
3,460,485	+		IAI47_16320	0.83	+1.2
3,460,485	+				+0.6
3,460,485	+		IAI47_16320	0.83	+0.3
3,460,485	+		IAI47_16320	0.83	+3.2
3,460,485	+		IAI47_16320	0.83	-0.6
3,460,486	-		IAI47_16320	0.83	-0.9
3,460,486	-		IAI47_16320	0.83	-1.3
3,460,486	-		IAI47_16320	0.83	-0.4
3,460,489	+		IAI47_16320	0.83	-0.5
3,460,489	+		IAI47_16320	0.83	+0.8
3,460,490	-		IAI47_16320	0.83	+0.2
3,460,572	-				-0.9
3,460,666	+				+0.4
3,460,666	+				-1.3
3,460,666	+				+0.5
3,460,666	+				+0.8
3,460,673	+				+1.5
3,460,673	+				+0.8
3,460,673	+				-0.3
3,460,673	+				-1.4
3,460,673	+				-0.1
3,460,673	+				+0.2
3,460,674	-				-1.2
3,460,674	-				+0.7
3,460,674	-				-1.3
3,460,674	-				-0.3
3,460,674	-				+0.7
3,460,674	-				-1.6
3,460,705	+				-1.4
3,460,747	-				-0.3
3,460,812	+				-1.8
3,460,812	+				+1.4
3,460,812	+				-0.3
3,460,813	-				+0.3
3,460,813	-				-1.5
3,460,813	-				+0.6
3,460,814	+				+0.0
3,460,814	+				-1.3
3,460,814	+				-1.8
3,460,814	+				+1.7
3,460,814	+				-0.3
3,460,814	+				-0.4
3,460,814	+				+1.2
3,460,814	+				-0.7
3,460,815	-				+0.4
3,460,815	-				-0.1
3,460,815	-				-0.3
3,460,815	-				+0.0
3,460,815	-				-1.2
3,460,815	-				-0.3
3,460,815	-				-1.7
3,460,856	+				-0.4
3,460,856	+				+0.9
3,460,856	+				+0.6
3,460,856	+				+0.3
3,460,857	-				-0.8
3,460,857	-				-1.8
3,460,857	-				+0.7
3,460,857	-				+1.3
3,460,857	-				+0.3
3,460,906	+				+1.1
3,460,906	+				-0.3
3,460,928	+				+0.3
3,460,970	+		IAI47_16325	0.10	-1.3
3,460,971	-		IAI47_16325	0.10	-2.1
3,461,013	+		IAI47_16325	0.13	-1.6
3,461,013	+		IAI47_16325	0.13	-1.0
3,461,014	-		IAI47_16325	0.13	-0.3
3,461,036	+		IAI47_16325	0.14	-0.3
3,461,037	-		IAI47_16325	0.14	+0.7
3,461,037	-		IAI47_16325	0.14	+0.5
3,461,037	-		IAI47_16325	0.14	+0.0
3,461,086	+		IAI47_16325	0.17	-0.5
3,461,086	+		IAI47_16325	0.17	-1.2
3,461,087	-		IAI47_16325	0.17	-0.1
3,461,118	+		IAI47_16325	0.19	-1.0
3,461,127	+		IAI47_16325	0.20	-0.3
3,461,127	+		IAI47_16325	0.20	-0.1
3,461,127	+		IAI47_16325	0.20	-1.4
3,461,127	+		IAI47_16325	0.20	-0.3
3,461,128	-		IAI47_16325	0.20	+0.7
3,461,220	-		IAI47_16325	0.25	-0.4
3,461,454	+		IAI47_16325	0.39	-0.4
3,461,454	+		IAI47_16325	0.39	-0.3
3,461,454	+		IAI47_16325	0.39	-1.5
3,461,455	-		IAI47_16325	0.39	-0.9
3,461,455	-		IAI47_16325	0.39	-1.0
3,461,455	-		IAI47_16325	0.39	-0.8
3,461,455	-		IAI47_16325	0.39	+1.0
3,461,507	+		IAI47_16325	0.43	+0.8
3,461,508	-		IAI47_16325	0.43	-2.4
3,461,526	+		IAI47_16325	0.44	-0.8
3,461,526	+		IAI47_16325	0.44	+1.3
3,461,526	+		IAI47_16325	0.44	+0.9
3,461,526	+		IAI47_16325	0.44	-1.9
3,461,526	+		IAI47_16325	0.44	-2.1
3,461,526	+		IAI47_16325	0.44	-1.6
3,461,526	+		IAI47_16325	0.44	-1.3
3,461,526	+		IAI47_16325	0.44	-0.4
3,461,526	+		IAI47_16325	0.44	+0.3
3,461,526	+		IAI47_16325	0.44	-0.9
3,461,527	-		IAI47_16325	0.44	+0.5
3,461,527	-		IAI47_16325	0.44	+0.4
3,461,527	-		IAI47_16325	0.44	+0.0
3,461,527	-		IAI47_16325	0.44	-0.5
3,461,527	-		IAI47_16325	0.44	-0.1
3,461,527	-		IAI47_16325	0.44	-0.2
3,461,527	-		IAI47_16325	0.44	+0.9
3,461,527	-		IAI47_16325	0.44	+0.4
3,461,527	-		IAI47_16325	0.44	+0.8
3,461,527	-		IAI47_16325	0.44	-0.6
3,461,594	+		IAI47_16325	0.48	+2.3
3,461,594	+		IAI47_16325	0.48	-1.8
3,461,594	+		IAI47_16325	0.48	-0.6
3,461,594	+		IAI47_16325	0.48	-0.6
3,461,594	+		IAI47_16325	0.48	+0.2
3,461,652	-		IAI47_16325	0.51	-0.6
3,461,700	+		IAI47_16325	0.54	-0.3
3,461,701	-		IAI47_16325	0.54	-1.4
3,461,701	-		IAI47_16325	0.54	-0.5
3,461,701	-		IAI47_16325	0.54	-1.9
3,461,732	+		IAI47_16325	0.56	+0.4
3,461,732	+		IAI47_16325	0.56	-1.5
3,461,733	-		IAI47_16325	0.56	-0.8
3,461,733	-		IAI47_16325	0.56	-0.0
3,461,786	+		IAI47_16325	0.59	+1.0
3,461,787	-		IAI47_16325	0.59	-1.5
3,461,787	-		IAI47_16325	0.59	-1.5
3,461,787	-		IAI47_16325	0.59	-1.0
3,461,793	+		IAI47_16325	0.60	-1.9
3,461,793	+		IAI47_16325	0.60	+0.8
3,461,794	-		IAI47_16325	0.60	-0.7
3,461,858	+		IAI47_16325	0.64	-2.3
3,461,859	-		IAI47_16325	0.64	-0.1
3,461,867	+		IAI47_16325	0.64	-0.6
3,461,879	+		IAI47_16325	0.65	+1.1
3,461,993	+		IAI47_16325	0.72	-1.3
3,461,994	-		IAI47_16325	0.72	-0.1
3,461,994	-		IAI47_16325	0.72	+0.2
3,461,994	-		IAI47_16325	0.72	-1.7
3,461,994	-		IAI47_16325	0.72	+1.6
3,462,045	-		IAI47_16325	0.75	-0.3
3,462,075	+		IAI47_16325	0.77	-0.1
3,462,075	+		IAI47_16325	0.77	+1.8
3,462,075	+		IAI47_16325	0.77	+0.8
3,462,075	+		IAI47_16325	0.77	-2.1
3,462,075	+		IAI47_16325	0.77	+1.0
3,462,076	-		IAI47_16325	0.77	-0.8
3,462,076	-		IAI47_16325	0.77	-0.6
3,462,076	-		IAI47_16325	0.77	+0.3
3,462,076	-		IAI47_16325	0.77	-1.6
3,462,090	-		IAI47_16325	0.78	-0.0
3,462,095	+		IAI47_16325	0.78	+0.2
3,462,095	+		IAI47_16325	0.78	-0.6
3,462,095	+		IAI47_16325	0.78	-0.4
3,462,096	-		IAI47_16325	0.78	-0.5
3,462,096	-		IAI47_16325	0.78	-0.7
3,462,096	-		IAI47_16325	0.78	+0.9
3,462,315	-				+2.5
3,462,336	+				+1.0
3,462,350	+				-0.5
3,462,351	-				+0.2
3,462,351	-				+0.1
3,462,351	-				-0.2
3,462,351	-				+1.1
3,462,351	-				-0.8
3,462,353	+				+1.9
3,462,353	+				+0.9
3,462,354	-				+0.7
3,462,354	-				+1.0
3,462,371	+				+0.5
3,462,372	-				-0.8
3,462,385	-				+1.4
3,462,393	+				-2.5
3,462,393	+				-0.2
3,462,393	+				-1.8
3,462,393	+				+0.5
3,462,394	-				-0.5
3,462,394	-				+1.0
3,462,394	-				-0.7
3,462,404	+				+1.3
3,462,404	+				-0.9
3,462,404	+				-0.1
3,462,404	+				+0.7
3,462,404	+				+0.2
3,462,405	-				+0.9
3,462,444	+				-1.7
3,462,445	-				-0.2
3,462,445	-				-2.1
3,462,445	-				-0.1
3,462,452	+				-1.8
3,462,452	+				-2.7
3,462,452	+				-1.6
3,462,452	+				-0.2
3,462,452	+				-0.2
3,462,452	+				-1.6
3,462,453	-				+0.1
3,462,453	-				-1.0
3,462,453	-				+0.2
3,462,462	+				-0.2
3,462,462	+				-0.6
3,462,462	+				+0.2
3,462,463	-				-0.7
3,462,463	-				-0.2
3,462,463	-				+0.0
3,462,463	-				+3.7
3,462,471	-				+0.1
3,462,517	+				-0.8
3,462,517	+				+1.8
3,462,518	-				+1.8
3,462,557	+				+1.0
3,462,557	+				+1.3
3,462,557	+				+1.7
3,462,557	+				-0.9
3,462,599	-				-0.6
3,462,701	+		IAI47_16330	0.21	+1.2
3,462,736	+		IAI47_16330	0.25	-0.9
3,462,736	+		IAI47_16330	0.25	+0.8
3,462,741	+		IAI47_16330	0.26	+1.3
3,462,741	+		IAI47_16330	0.26	+0.7
3,462,741	+		IAI47_16330	0.26	+0.0
3,462,742	-		IAI47_16330	0.26	-1.4
3,462,742	-		IAI47_16330	0.26	+0.8
3,462,742	-		IAI47_16330	0.26	+0.7
3,462,742	-		IAI47_16330	0.26	+0.5
3,462,781	+		IAI47_16330	0.30	-1.2
3,462,781	+				+0.6
3,462,781	+		IAI47_16330	0.30	-0.0
3,462,781	+		IAI47_16330	0.30	-0.1
3,462,782	-		IAI47_16330	0.30	-0.3
3,462,782	-		IAI47_16330	0.30	-2.3
3,462,804	+		IAI47_16330	0.33	-0.2
3,462,834	-		IAI47_16330	0.36	-0.8
3,462,884	+		IAI47_16330	0.42	+1.2
3,462,884	+		IAI47_16330	0.42	-0.7
3,462,884	+		IAI47_16330	0.42	-0.7
3,462,884	+		IAI47_16330	0.42	+0.7
3,462,885	-		IAI47_16330	0.42	+4.2
3,462,885	-		IAI47_16330	0.42	+1.8
3,462,885	-		IAI47_16330	0.42	+2.6
3,462,889	+		IAI47_16330	0.42	-0.1
3,462,889	+		IAI47_16330	0.42	-1.3
3,462,890	-		IAI47_16330	0.42	+0.0
3,462,890	-		IAI47_16330	0.42	-1.1
3,462,890	-		IAI47_16330	0.42	-1.6
3,462,890	-		IAI47_16330	0.42	-0.5
3,462,890	-		IAI47_16330	0.42	-0.3
3,462,996	+		IAI47_16330	0.54	-0.1
3,462,997	-		IAI47_16330	0.54	-1.9
3,462,997	-		IAI47_16330	0.54	+1.1
3,462,998	-		IAI47_16330	0.54	-1.2
3,463,049	-		IAI47_16330	0.60	+0.1
3,463,070	+		IAI47_16330	0.62	-1.0
3,463,070	+		IAI47_16330	0.62	+0.2
3,463,070	+		IAI47_16330	0.62	+1.6
3,463,071	-		IAI47_16330	0.63	-2.0
3,463,071	-		IAI47_16330	0.63	+0.4
3,463,207	+		IAI47_16330	0.78	-1.8
3,463,208	-		IAI47_16330	0.78	-1.2
3,463,208	-		IAI47_16330	0.78	+1.6
3,463,251	-		IAI47_16330	0.83	+0.1
3,463,292	+		IAI47_16330	0.87	-1.8
3,463,292	+		IAI47_16330	0.87	+0.3
3,463,293	-		IAI47_16330	0.87	+0.1
3,463,313	+		IAI47_16330	0.90	-0.0
3,463,314	-		IAI47_16330	0.90	+1.9
3,463,314	-		IAI47_16330	0.90	+0.8
3,463,314	-		IAI47_16330	0.90	-0.1
3,463,343	+				-0.9
3,463,449	-				+0.4
3,463,449	-				-0.9