Strain Fitness in Pantoea sp. MT58 around IAI47_16275

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,449,099	+		IAI47_16270	0.76	+0.3
3,449,153	-		IAI47_16270	0.77	-1.1
3,449,153	-		IAI47_16270	0.77	-0.4
3,449,165	-		IAI47_16270	0.78	+3.4
3,449,172	+		IAI47_16270	0.78	-0.0
3,449,172	+		IAI47_16270	0.78	+0.0
3,449,173	-		IAI47_16270	0.78	-1.7
3,449,173	-		IAI47_16270	0.78	-0.6
3,449,173	-		IAI47_16270	0.78	-0.4
3,449,173	-		IAI47_16270	0.78	+0.4
3,449,173	-		IAI47_16270	0.78	+0.1
3,449,173	-		IAI47_16270	0.78	-1.1
3,449,173	-		IAI47_16270	0.78	+0.9
3,449,216	+		IAI47_16270	0.79	-0.3
3,449,216	+		IAI47_16270	0.79	+1.5
3,449,216	+		IAI47_16270	0.79	+0.7
3,449,216	+		IAI47_16270	0.79	-0.5
3,449,216	+		IAI47_16270	0.79	+0.0
3,449,217	-		IAI47_16270	0.79	-1.3
3,449,303	+		IAI47_16270	0.82	+0.9
3,449,303	+		IAI47_16270	0.82	-1.4
3,449,303	+		IAI47_16270	0.82	-1.9
3,449,304	-		IAI47_16270	0.82	+2.3
3,449,304	-		IAI47_16270	0.82	+1.4
3,449,304	-		IAI47_16270	0.82	+0.4
3,449,304	-		IAI47_16270	0.82	+1.1
3,449,317	+		IAI47_16270	0.82	-2.3
3,449,317	+		IAI47_16270	0.82	+1.5
3,449,318	-		IAI47_16270	0.82	-0.3
3,449,318	-		IAI47_16270	0.82	+0.4
3,449,357	+		IAI47_16270	0.83	+0.9
3,449,357	+		IAI47_16270	0.83	-1.7
3,449,357	+		IAI47_16270	0.83	+1.2
3,449,357	+		IAI47_16270	0.83	+0.0
3,449,357	+		IAI47_16270	0.83	+1.8
3,449,357	+		IAI47_16270	0.83	+2.4
3,449,357	+		IAI47_16270	0.83	+0.6
3,449,357	+		IAI47_16270	0.83	+1.3
3,449,357	+		IAI47_16270	0.83	-1.5
3,449,357	+		IAI47_16270	0.83	-0.1
3,449,357	+		IAI47_16270	0.83	-1.3
3,449,357	+		IAI47_16270	0.83	-0.5
3,449,357	+		IAI47_16270	0.83	+0.9
3,449,357	+		IAI47_16270	0.83	+1.4
3,449,357	+		IAI47_16270	0.83	+1.0
3,449,357	+		IAI47_16270	0.83	+0.6
3,449,357	+		IAI47_16270	0.83	-1.4
3,449,357	+		IAI47_16270	0.83	+0.9
3,449,357	+		IAI47_16270	0.83	+0.4
3,449,357	+		IAI47_16270	0.83	-1.1
3,449,358	-		IAI47_16270	0.83	-0.3
3,449,358	-		IAI47_16270	0.83	-1.8
3,449,358	-		IAI47_16270	0.83	-1.2
3,449,358	-		IAI47_16270	0.83	-0.8
3,449,358	-		IAI47_16270	0.83	-2.1
3,449,358	-		IAI47_16270	0.83	-0.9
3,449,358	-		IAI47_16270	0.83	-0.5
3,449,358	-		IAI47_16270	0.83	-1.7
3,449,358	-				-1.6
3,449,358	-		IAI47_16270	0.83	+0.8
3,449,358	-		IAI47_16270	0.83	-0.6
3,449,358	-		IAI47_16270	0.83	-0.7
3,449,358	-		IAI47_16270	0.83	-0.6
3,449,358	-		IAI47_16270	0.83	+2.7
3,449,358	-		IAI47_16270	0.83	-1.1
3,449,358	-		IAI47_16270	0.83	-1.1
3,449,369	+		IAI47_16270	0.83	+0.5
3,449,369	+		IAI47_16270	0.83	+1.2
3,449,404	-		IAI47_16270	0.84	+0.2
3,449,685	+				-0.3
3,449,685	+				+1.2
3,449,686	-				+0.8
3,449,848	+				+0.9
3,449,969	+				+0.3
3,449,970	-				-1.3
3,450,005	-				+1.1
3,450,038	+				-0.1
3,450,039	-				+0.1
3,450,039	-				+0.9
3,450,039	-				-0.4
3,450,039	-				-0.5
3,450,039	-				+0.5
3,450,058	+		IAI47_16275	0.11	+0.9
3,450,153	+		IAI47_16275	0.25	+0.1
3,450,212	-		IAI47_16275	0.33	+1.2
3,450,245	+		IAI47_16275	0.38	+1.3
3,450,245	+		IAI47_16275	0.38	+1.2
3,450,245	+		IAI47_16275	0.38	-0.9
3,450,246	-		IAI47_16275	0.38	+1.3
3,450,246	-		IAI47_16275	0.38	+3.2
3,450,246	-		IAI47_16275	0.38	+2.5
3,450,246	-		IAI47_16275	0.38	-0.6
3,450,279	+		IAI47_16275	0.42	+1.6
3,450,280	-		IAI47_16275	0.43	+1.3
3,450,450	+		IAI47_16275	0.67	+1.1
3,450,450	+		IAI47_16275	0.67	-0.6
3,450,450	+		IAI47_16275	0.67	-0.4
3,450,450	+		IAI47_16275	0.67	-0.2
3,450,451	-		IAI47_16275	0.67	-0.4
3,450,451	-		IAI47_16275	0.67	+0.8
3,450,451	-		IAI47_16275	0.67	+0.9
3,450,527	+		IAI47_16275	0.78	+0.7
3,450,527	+		IAI47_16275	0.78	+0.7
3,450,527	+		IAI47_16275	0.78	+2.0
3,450,527	+		IAI47_16275	0.78	+0.3
3,450,527	+		IAI47_16275	0.78	-0.3
3,450,528	-		IAI47_16275	0.78	+1.4
3,450,549	+		IAI47_16275	0.81	-0.4
3,450,549	+		IAI47_16275	0.81	-0.1
3,450,549	+		IAI47_16275	0.81	+1.4
3,450,550	-		IAI47_16275	0.81	+0.8
3,450,616	+				+0.2
3,450,616	+				+1.0
3,450,616	+				+1.6
3,450,617	-				+0.8
3,450,617	-				+0.1
3,450,681	-				-0.9
3,450,685	+				-1.4
3,450,685	+				+0.3
3,450,685	+				+0.3
3,450,685	+				-1.5
3,450,685	+				+1.0
3,450,685	+				-0.2
3,450,685	+				-1.7
3,450,685	+				-1.4
3,450,685	+				-0.1
3,450,685	+				-0.0
3,450,685	+				+0.4
3,450,685	+				+0.3
3,450,686	-				+0.3
3,450,686	-				+0.5
3,450,686	-				+0.7
3,450,686	-				+0.8
3,450,686	-				+2.9
3,450,686	-				-1.6
3,450,686	-				-0.6
3,450,686	-				+0.2
3,450,686	-				+0.7
3,450,686	-				+0.9
3,450,686	-				+0.5
3,450,704	+				-0.6
3,450,704	+				-0.3
3,450,704	+				-1.2
3,450,705	-				+0.7
3,450,705	-				-2.0
3,450,705	-				+0.3
3,450,763	+				+1.3
3,450,764	-				+0.7
3,450,764	-				+0.7
3,451,000	+		IAI47_16280	0.23	+0.6
3,451,001	-		IAI47_16280	0.23	-0.8
3,451,088	+		IAI47_16280	0.30	-0.2
3,451,089	-		IAI47_16280	0.30	-0.3
3,451,089	-		IAI47_16280	0.30	-1.1
3,451,089	-		IAI47_16280	0.30	-0.2
3,451,100	+		IAI47_16280	0.31	-0.3
3,451,100	+		IAI47_16280	0.31	-2.0
3,451,100	+		IAI47_16280	0.31	-0.3
3,451,100	+		IAI47_16280	0.31	+1.2
3,451,100	+		IAI47_16280	0.31	+0.9
3,451,101	-		IAI47_16280	0.31	+0.2
3,451,101	-		IAI47_16280	0.31	-0.6
3,451,123	+		IAI47_16280	0.33	-0.5
3,451,123	+		IAI47_16280	0.33	+0.0
3,451,124	-		IAI47_16280	0.33	+3.0
3,451,124	-		IAI47_16280	0.33	+0.3
3,451,124	-		IAI47_16280	0.33	+2.7
3,451,124	-		IAI47_16280	0.33	-0.6
3,451,133	+		IAI47_16280	0.33	-2.2
3,451,133	+		IAI47_16280	0.33	+0.0
3,451,133	+		IAI47_16280	0.33	-0.3
3,451,134	-		IAI47_16280	0.33	-0.3
3,451,134	-		IAI47_16280	0.33	+0.5
3,451,134	-		IAI47_16280	0.33	-0.1
3,451,134	-		IAI47_16280	0.33	-0.5
3,451,178	+		IAI47_16280	0.37	+0.4
3,451,178	+		IAI47_16280	0.37	+1.0
3,451,178	+		IAI47_16280	0.37	+0.0
3,451,178	+		IAI47_16280	0.37	+0.1
3,451,178	+		IAI47_16280	0.37	+0.3
3,451,179	-		IAI47_16280	0.37	-1.1
3,451,235	+		IAI47_16280	0.41	+1.3
3,451,235	+		IAI47_16280	0.41	-0.2
3,451,235	+		IAI47_16280	0.41	-0.3
3,451,235	+		IAI47_16280	0.41	+1.0
3,451,236	-		IAI47_16280	0.41	+0.4
3,451,236	-		IAI47_16280	0.41	+0.2
3,451,236	-		IAI47_16280	0.41	-1.3
3,451,236	-		IAI47_16280	0.41	-0.7
3,451,236	-		IAI47_16280	0.41	+1.2
3,451,241	+		IAI47_16280	0.42	-0.3
3,451,241	+		IAI47_16280	0.42	-0.4
3,451,242	-		IAI47_16280	0.42	+0.8
3,451,242	-		IAI47_16280	0.42	-0.2
3,451,300	+		IAI47_16280	0.46	-1.6
3,451,300	+		IAI47_16280	0.46	+1.6
3,451,300	+		IAI47_16280	0.46	-0.6
3,451,300	+		IAI47_16280	0.46	+0.3
3,451,301	-		IAI47_16280	0.47	+2.5
3,451,301	-		IAI47_16280	0.47	-0.0
3,451,306	+		IAI47_16280	0.47	-0.6
3,451,307	-		IAI47_16280	0.47	+0.3
3,451,319	+		IAI47_16280	0.48	-0.4
3,451,319	+		IAI47_16280	0.48	+0.3
3,451,319	+		IAI47_16280	0.48	+1.5
3,451,319	+		IAI47_16280	0.48	+0.1
3,451,320	-		IAI47_16280	0.48	+0.8
3,451,334	+		IAI47_16280	0.49	+0.0
3,451,335	-		IAI47_16280	0.49	+2.4
3,451,343	+		IAI47_16280	0.50	-0.4
3,451,343	+		IAI47_16280	0.50	+0.8
3,451,343	+		IAI47_16280	0.50	-1.9
3,451,367	-		IAI47_16280	0.52	-1.6
3,451,436	+		IAI47_16280	0.57	+1.0
3,451,436	+		IAI47_16280	0.57	+0.2
3,451,436	+		IAI47_16280	0.57	+2.2
3,451,436	+		IAI47_16280	0.57	+0.0
3,451,437	-		IAI47_16280	0.57	+1.0
3,451,437	-		IAI47_16280	0.57	-0.9
3,451,437	-		IAI47_16280	0.57	-0.4
3,451,549	-		IAI47_16280	0.66	+1.5
3,451,549	-		IAI47_16280	0.66	-0.7
3,451,549	-		IAI47_16280	0.66	+1.2
3,451,562	+		IAI47_16280	0.67	-0.3
3,451,562	+		IAI47_16280	0.67	+0.2
3,451,562	+		IAI47_16280	0.67	+0.3
3,451,563	-		IAI47_16280	0.67	-2.7
3,451,579	+		IAI47_16280	0.68	-0.1
3,451,619	+		IAI47_16280	0.72	+0.8
3,451,633	+		IAI47_16280	0.73	-0.2
3,451,633	+		IAI47_16280	0.73	+0.2
3,451,633	+		IAI47_16280	0.73	+0.3
3,451,633	+		IAI47_16280	0.73	-0.1
3,451,634	-		IAI47_16280	0.73	+0.7
3,451,634	-		IAI47_16280	0.73	+0.4
3,451,634	-		IAI47_16280	0.73	+0.5
3,451,634	-		IAI47_16280	0.73	-0.6
3,451,634	-		IAI47_16280	0.73	-0.1
3,451,634	-		IAI47_16280	0.73	+0.3
3,451,634	-		IAI47_16280	0.73	-2.0