Strain Fitness in Pantoea sp. MT58 around IAI47_14275

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,017,907	+		IAI47_14270	0.46	+0.7
3,017,917	+		IAI47_14270	0.47	-1.5
3,017,918	-		IAI47_14270	0.47	+0.3
3,017,963	+		IAI47_14270	0.49	+0.0
3,017,964	-		IAI47_14270	0.49	-1.1
3,017,964	-		IAI47_14270	0.49	-0.6
3,017,974	+		IAI47_14270	0.50	+2.0
3,017,974	+		IAI47_14270	0.50	-0.0
3,017,975	-		IAI47_14270	0.50	-2.7
3,018,118	+		IAI47_14270	0.58	-2.1
3,018,119	-		IAI47_14270	0.58	-1.7
3,018,142	-		IAI47_14270	0.59	-1.1
3,018,165	+		IAI47_14270	0.60	-0.0
3,018,165	+		IAI47_14270	0.60	+0.9
3,018,165	+		IAI47_14270	0.60	-1.0
3,018,166	-		IAI47_14270	0.61	+2.1
3,018,166	-		IAI47_14270	0.61	-0.7
3,018,166	-		IAI47_14270	0.61	-0.3
3,018,166	-		IAI47_14270	0.61	+1.5
3,018,176	+		IAI47_14270	0.61	+1.1
3,018,177	-		IAI47_14270	0.61	+0.5
3,018,177	-		IAI47_14270	0.61	-1.3
3,018,177	-		IAI47_14270	0.61	-0.3
3,018,177	-		IAI47_14270	0.61	+0.4
3,018,177	-		IAI47_14270	0.61	-0.0
3,018,178	+		IAI47_14270	0.61	-1.2
3,018,178	+		IAI47_14270	0.61	-0.7
3,018,179	-		IAI47_14270	0.61	-0.6
3,018,179	-		IAI47_14270	0.61	+1.5
3,018,199	+		IAI47_14270	0.62	-2.0
3,018,200	-		IAI47_14270	0.62	+0.1
3,018,200	-		IAI47_14270	0.62	+0.8
3,018,215	-		IAI47_14270	0.63	-0.5
3,018,249	-		IAI47_14270	0.65	-1.5
3,018,249	-		IAI47_14270	0.65	-1.1
3,018,249	-		IAI47_14270	0.65	-0.3
3,018,252	+		IAI47_14270	0.65	-0.6
3,018,299	+		IAI47_14270	0.68	+0.5
3,018,299	+		IAI47_14270	0.68	-1.5
3,018,299	+		IAI47_14270	0.68	-2.7
3,018,299	+		IAI47_14270	0.68	-0.3
3,018,300	-		IAI47_14270	0.68	-1.2
3,018,309	+		IAI47_14270	0.68	+2.5
3,018,309	+		IAI47_14270	0.68	+0.4
3,018,310	-		IAI47_14270	0.68	+1.1
3,018,314	+		IAI47_14270	0.69	-0.9
3,018,314	+		IAI47_14270	0.69	+0.5
3,018,314	+		IAI47_14270	0.69	+0.3
3,018,314	+		IAI47_14270	0.69	+1.8
3,018,314	+		IAI47_14270	0.69	+1.2
3,018,315	-		IAI47_14270	0.69	-0.9
3,018,315	-		IAI47_14270	0.69	+1.7
3,018,316	+		IAI47_14270	0.69	-1.3
3,018,317	-		IAI47_14270	0.69	-1.6
3,018,328	+		IAI47_14270	0.69	-0.0
3,018,329	-		IAI47_14270	0.70	+0.4
3,018,341	-		IAI47_14270	0.70	+1.8
3,018,345	+		IAI47_14270	0.70	-0.6
3,018,346	-		IAI47_14270	0.70	-1.6
3,018,399	-		IAI47_14270	0.73	+0.4
3,018,399	-		IAI47_14270	0.73	+0.8
3,018,427	+		IAI47_14270	0.75	-1.6
3,018,428	-		IAI47_14270	0.75	-0.6
3,018,428	-		IAI47_14270	0.75	-1.1
3,018,469	+		IAI47_14270	0.77	+1.6
3,018,470	-		IAI47_14270	0.77	-0.5
3,018,470	-		IAI47_14270	0.77	+2.4
3,018,523	+		IAI47_14270	0.80	-0.7
3,018,524	-		IAI47_14270	0.80	+0.8
3,018,525	+		IAI47_14270	0.80	-0.4
3,018,525	+		IAI47_14270	0.80	-1.9
3,018,526	-		IAI47_14270	0.80	-2.3
3,018,526	-		IAI47_14270	0.80	+1.5
3,018,526	-		IAI47_14270	0.80	+0.7
3,018,526	-		IAI47_14270	0.80	+0.2
3,018,596	+		IAI47_14270	0.84	+0.9
3,018,596	+		IAI47_14270	0.84	-0.5
3,018,596	+		IAI47_14270	0.84	-1.3
3,018,596	+		IAI47_14270	0.84	+0.4
3,018,597	-		IAI47_14270	0.84	-0.1
3,018,597	-		IAI47_14270	0.84	+1.8
3,018,597	-		IAI47_14270	0.84	+1.0
3,018,597	-		IAI47_14270	0.84	+1.8
3,018,597	-		IAI47_14270	0.84	+1.5
3,018,597	-		IAI47_14270	0.84	-0.4
3,018,597	-		IAI47_14270	0.84	-2.0
3,018,601	+		IAI47_14270	0.85	-0.3
3,018,601	+		IAI47_14270	0.85	-0.3
3,018,601	+		IAI47_14270	0.85	+0.7
3,018,601	+		IAI47_14270	0.85	+2.2
3,018,601	+		IAI47_14270	0.85	-2.0
3,018,601	+		IAI47_14270	0.85	+0.7
3,018,601	+		IAI47_14270	0.85	-2.4
3,018,601	+		IAI47_14270	0.85	+0.4
3,018,601	+		IAI47_14270	0.85	+0.8
3,018,601	+		IAI47_14270	0.85	+0.2
3,018,601	+		IAI47_14270	0.85	-1.3
3,018,601	+		IAI47_14270	0.85	-1.6
3,018,601	+		IAI47_14270	0.85	+0.5
3,018,601	+		IAI47_14270	0.85	-0.3
3,018,602	-		IAI47_14270	0.85	-1.4
3,018,602	-		IAI47_14270	0.85	-1.1
3,018,602	-		IAI47_14270	0.85	+0.8
3,018,602	-		IAI47_14270	0.85	-2.5
3,018,602	-		IAI47_14270	0.85	+1.2
3,018,602	-		IAI47_14270	0.85	-0.2
3,018,602	-		IAI47_14270	0.85	+0.5
3,018,602	-		IAI47_14270	0.85	-0.6
3,018,602	-		IAI47_14270	0.85	+0.6
3,018,602	-		IAI47_14270	0.85	-1.2
3,018,602	-		IAI47_14270	0.85	+0.8
3,018,602	-		IAI47_14270	0.85	+0.7
3,018,602	-		IAI47_14270	0.85	+1.5
3,018,602	-		IAI47_14270	0.85	+1.0
3,018,605	+		IAI47_14270	0.85	+0.7
3,018,605	+		IAI47_14270	0.85	+1.8
3,018,605	+		IAI47_14270	0.85	-0.7
3,018,606	-		IAI47_14270	0.85	+0.9
3,018,662	+		IAI47_14270	0.88	-0.6
3,018,663	-		IAI47_14270	0.88	+0.3
3,018,673	+		IAI47_14270	0.89	-0.3
3,018,673	+		IAI47_14270	0.89	-1.0
3,018,673	+		IAI47_14270	0.89	+1.8
3,018,673	+		IAI47_14270	0.89	+0.5
3,018,673	+		IAI47_14270	0.89	+1.3
3,018,673	+		IAI47_14270	0.89	-1.4
3,018,674	-		IAI47_14270	0.89	+0.6
3,018,674	-		IAI47_14270	0.89	-0.1
3,018,674	-		IAI47_14270	0.89	-2.2
3,018,674	-		IAI47_14270	0.89	+0.7
3,018,707	-				+0.8
3,018,707	-				-0.3
3,018,831	+				-2.6
3,018,831	+				+0.1
3,018,852	+				-1.6
3,018,852	+				+0.7
3,018,853	-				+0.0
3,018,853	-				+3.6
3,018,893	+				+1.2
3,018,899	-				-0.1
3,018,899	-				-0.6
3,018,954	+		IAI47_14275	0.15	-1.5
3,018,954	+		IAI47_14275	0.15	-1.3
3,018,975	+		IAI47_14275	0.20	-0.7
3,019,057	+		IAI47_14275	0.40	-0.7
3,019,077	+		IAI47_14275	0.45	-0.2
3,019,080	+		IAI47_14275	0.46	-1.1
3,019,080	+		IAI47_14275	0.46	-0.4
3,019,080	+		IAI47_14275	0.46	-2.2
3,019,080	+		IAI47_14275	0.46	-0.2
3,019,081	-		IAI47_14275	0.46	-1.3
3,019,087	-		IAI47_14275	0.48	-0.3
3,019,131	-		IAI47_14275	0.59	-0.8
3,019,134	+		IAI47_14275	0.59	+1.3
3,019,135	-		IAI47_14275	0.60	-2.2
3,019,150	+		IAI47_14275	0.63	+1.1
3,019,151	-		IAI47_14275	0.63	-1.9
3,019,151	-		IAI47_14275	0.63	-0.6
3,019,207	+		IAI47_14275	0.77	+0.5
3,019,207	+		IAI47_14275	0.77	-0.1
3,019,208	-		IAI47_14275	0.77	+0.8
3,019,272	+				+0.7
3,019,273	-				+2.4
3,019,273	-				+1.3
3,019,292	-				-2.8
3,019,292	-				+0.6
3,019,292	-				-2.4
3,019,299	+				-0.4
3,019,299	+				+1.0
3,019,299	+				-0.9
3,019,299	+				+0.9
3,019,299	+				-0.2
3,019,300	-				-0.7
3,019,323	-				+0.9
3,019,324	+				+0.6
3,019,325	-				-1.4
3,019,325	-				-0.3
3,019,325	-				-0.8
3,019,359	+				+1.8
3,019,359	+				-0.1
3,019,359	+				+1.7
3,019,413	+		IAI47_14280	0.14	+0.0
3,019,413	+		IAI47_14280	0.14	+0.7
3,019,414	-		IAI47_14280	0.14	+3.6
3,019,419	+		IAI47_14280	0.15	+0.4
3,019,419	+		IAI47_14280	0.15	+0.5
3,019,420	-		IAI47_14280	0.15	-0.8
3,019,434	+		IAI47_14280	0.18	-0.2
3,019,435	-		IAI47_14280	0.18	-0.6
3,019,447	+		IAI47_14280	0.21	+1.6
3,019,447	+		IAI47_14280	0.21	+1.2
3,019,447	+		IAI47_14280	0.21	+0.5
3,019,448	-		IAI47_14280	0.21	+1.5
3,019,472	-		IAI47_14280	0.26	+1.3
3,019,474	-		IAI47_14280	0.26	+3.5
3,019,485	+		IAI47_14280	0.28	+1.4
3,019,485	+		IAI47_14280	0.28	+0.8
3,019,485	+		IAI47_14280	0.28	-0.9
3,019,485	+		IAI47_14280	0.28	+1.1
3,019,485	+		IAI47_14280	0.28	-0.1
3,019,486	-		IAI47_14280	0.28	-0.0
3,019,501	-		IAI47_14280	0.32	+1.0
3,019,501	-		IAI47_14280	0.32	+0.7
3,019,501	-		IAI47_14280	0.32	-0.3
3,019,510	-		IAI47_14280	0.33	-0.9
3,019,548	+		IAI47_14280	0.41	-1.7
3,019,554	+		IAI47_14280	0.42	-1.7
3,019,581	+		IAI47_14280	0.48	-0.3
3,019,582	-		IAI47_14280	0.48	+1.0
3,019,617	+		IAI47_14280	0.55	+0.5
3,019,617	+		IAI47_14280	0.55	-1.3
3,019,618	-		IAI47_14280	0.55	-1.1
3,019,618	-		IAI47_14280	0.55	-0.6
3,019,659	+		IAI47_14280	0.63	+0.9
3,019,660	-		IAI47_14280	0.64	-1.2
3,019,665	+		IAI47_14280	0.65	-0.1
3,019,666	-		IAI47_14280	0.65	+0.6
3,019,690	-		IAI47_14280	0.70	+0.2
3,019,728	+		IAI47_14280	0.77	-0.2
3,019,728	+		IAI47_14280	0.77	-0.6
3,019,728	+		IAI47_14280	0.77	+1.2
3,019,728	+		IAI47_14280	0.77	-1.8
3,019,728	+		IAI47_14280	0.77	+0.9
3,019,770	+		IAI47_14280	0.86	+0.1
3,019,770	+		IAI47_14280	0.86	+0.8
3,019,770	+		IAI47_14280	0.86	+1.5
3,019,771	-		IAI47_14280	0.86	-0.5
3,019,771	-		IAI47_14280	0.86	-0.2
3,019,773	-		IAI47_14280	0.86	+0.0
3,019,773	-		IAI47_14280	0.86	+0.8
3,019,773	-		IAI47_14280	0.86	+1.4
3,019,779	+		IAI47_14280	0.88	-2.0
3,019,780	-		IAI47_14280	0.88	-0.1
3,019,780	-		IAI47_14280	0.88	-0.2
3,019,799	-				-2.1
3,019,819	+				-0.7
3,019,819	+				-0.3
3,019,820	-				-1.2
3,019,820	-				+1.8
3,019,824	+				-1.3
3,019,824	+				+0.4
3,019,824	+				+1.2
3,019,824	+				-0.4
3,019,839	+				-0.5
3,019,840	-				-0.3
3,019,840	-				+2.0
3,019,854	-				+1.8
3,019,855	+				+0.9
3,019,855	+				-0.3
3,019,855	+				-0.1
3,019,887	+				-1.7
3,019,888	-				+0.1
3,019,949	-				+0.3
3,019,963	+				+0.5
3,019,964	-				+0.0
3,019,992	+				+2.0
3,020,030	+		IAI47_14285	0.11	-0.8
3,020,030	+		IAI47_14285	0.11	-0.7
3,020,030	+		IAI47_14285	0.11	-0.2
3,020,030	+		IAI47_14285	0.11	+0.0
3,020,031	-		IAI47_14285	0.11	+2.8
3,020,031	-		IAI47_14285	0.11	-0.8
3,020,033	+		IAI47_14285	0.11	-0.2
3,020,033	+		IAI47_14285	0.11	-0.9
3,020,033	+		IAI47_14285	0.11	+1.1
3,020,034	-		IAI47_14285	0.11	+0.7
3,020,034	-		IAI47_14285	0.11	-1.4
3,020,034	-		IAI47_14285	0.11	+2.6
3,020,034	-		IAI47_14285	0.11	-1.5
3,020,034	-		IAI47_14285	0.11	-1.4
3,020,065	+		IAI47_14285	0.13	-1.2
3,020,065	+		IAI47_14285	0.13	-1.1
3,020,065	+		IAI47_14285	0.13	-0.0
3,020,065	+		IAI47_14285	0.13	+0.8
3,020,065	+		IAI47_14285	0.13	+0.5
3,020,065	+		IAI47_14285	0.13	-2.9
3,020,065	+		IAI47_14285	0.13	-1.1
3,020,066	-		IAI47_14285	0.13	+0.6
3,020,066	-		IAI47_14285	0.13	+1.8
3,020,066	-		IAI47_14285	0.13	-2.3
3,020,066	-		IAI47_14285	0.13	-0.6
3,020,066	-		IAI47_14285	0.13	+2.4
3,020,066	-		IAI47_14285	0.13	-0.8
3,020,072	+		IAI47_14285	0.14	-1.4
3,020,073	-		IAI47_14285	0.14	-0.1
3,020,115	-		IAI47_14285	0.17	+1.6
3,020,115	-		IAI47_14285	0.17	-0.8
3,020,129	+		IAI47_14285	0.18	-0.1
3,020,147	+		IAI47_14285	0.19	+0.5
3,020,148	-		IAI47_14285	0.19	+0.8
3,020,148	-		IAI47_14285	0.19	+0.4
3,020,148	-		IAI47_14285	0.19	+0.7
3,020,148	-		IAI47_14285	0.19	+1.2
3,020,152	+		IAI47_14285	0.19	-1.3
3,020,153	-		IAI47_14285	0.19	-0.3
3,020,177	+		IAI47_14285	0.21	-0.2
3,020,177	+		IAI47_14285	0.21	+1.3
3,020,177	+		IAI47_14285	0.21	+0.8
3,020,177	+		IAI47_14285	0.21	-1.1
3,020,177	+		IAI47_14285	0.21	-0.6
3,020,178	-		IAI47_14285	0.21	-0.3
3,020,182	+		IAI47_14285	0.21	-0.1
3,020,182	+		IAI47_14285	0.21	+0.7
3,020,182	+		IAI47_14285	0.21	-1.5
3,020,182	+		IAI47_14285	0.21	-0.7
3,020,183	-		IAI47_14285	0.21	+0.8
3,020,183	-		IAI47_14285	0.21	-1.0
3,020,183	-		IAI47_14285	0.21	+0.6
3,020,233	+		IAI47_14285	0.25	+1.8
3,020,234	-		IAI47_14285	0.25	-0.3
3,020,234	-		IAI47_14285	0.25	+0.8
3,020,246	+		IAI47_14285	0.26	-1.8
3,020,247	-		IAI47_14285	0.26	-1.3
3,020,278	+		IAI47_14285	0.28	-1.2
3,020,278	+		IAI47_14285	0.28	+1.1
3,020,278	+		IAI47_14285	0.28	+0.1
3,020,278	+		IAI47_14285	0.28	+0.0
3,020,278	+		IAI47_14285	0.28	-2.0
3,020,278	+		IAI47_14285	0.28	+1.3
3,020,279	-		IAI47_14285	0.28	+0.8
3,020,297	-		IAI47_14285	0.29	-0.5
3,020,297	-		IAI47_14285	0.29	+1.1