Strain Fitness in Pantoea sp. MT58 around IAI47_12415

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,619,795	+		IAI47_12405	0.79	+0.4
2,619,795	+		IAI47_12405	0.79	-1.0
2,619,796	-		IAI47_12405	0.79	-1.6
2,619,816	+		IAI47_12405	0.80	+1.9
2,619,816	+		IAI47_12405	0.80	+0.2
2,619,816	+		IAI47_12405	0.80	+0.6
2,619,816	+		IAI47_12405	0.80	+0.7
2,619,816	+		IAI47_12405	0.80	-1.0
2,619,816	+		IAI47_12405	0.80	+1.6
2,619,817	-		IAI47_12405	0.80	+0.3
2,619,817	-		IAI47_12405	0.80	+0.9
2,619,817	-		IAI47_12405	0.80	-1.2
2,619,817	-		IAI47_12405	0.80	-1.4
2,619,817	-		IAI47_12405	0.80	-0.7
2,619,817	-		IAI47_12405	0.80	+0.5
2,619,820	+		IAI47_12405	0.80	-0.6
2,619,820	+		IAI47_12405	0.80	-0.3
2,619,820	+		IAI47_12405	0.80	+0.7
2,619,820	+		IAI47_12405	0.80	-0.7
2,619,820	+		IAI47_12405	0.80	+0.6
2,619,820	+		IAI47_12405	0.80	+2.4
2,619,820	+		IAI47_12405	0.80	-1.6
2,619,821	-		IAI47_12405	0.80	+0.6
2,619,821	-		IAI47_12405	0.80	+1.4
2,619,843	-		IAI47_12405	0.82	+0.0
2,619,891	+		IAI47_12405	0.85	+0.4
2,619,891	+		IAI47_12405	0.85	+2.4
2,619,891	+		IAI47_12405	0.85	+0.5
2,619,891	+		IAI47_12405	0.85	+1.0
2,619,892	-		IAI47_12405	0.85	+0.8
2,619,892	-		IAI47_12405	0.85	+3.6
2,619,892	-		IAI47_12405	0.85	+1.2
2,619,892	-		IAI47_12405	0.85	+1.8
2,619,893	+		IAI47_12405	0.85	+0.2
2,619,894	-		IAI47_12405	0.85	-1.0
2,619,894	-		IAI47_12405	0.85	-0.4
2,619,913	+		IAI47_12405	0.86	-2.1
2,619,913	+		IAI47_12405	0.86	-2.0
2,619,913	+		IAI47_12405	0.86	+0.3
2,619,914	-		IAI47_12405	0.86	+0.1
2,619,914	-		IAI47_12405	0.86	+1.7
2,620,133	-				+0.3
2,620,133	-				+0.2
2,620,155	+				+0.1
2,620,155	+				-0.6
2,620,155	+				+1.8
2,620,155	+				+1.0
2,620,156	-				-1.3
2,620,156	-				+0.1
2,620,156	-				-0.3
2,620,156	-				+0.4
2,620,156	-				-0.2
2,620,156	-				+1.3
2,620,156	-				-0.4
2,620,156	-				-0.1
2,620,156	-				-0.3
2,620,156	-				+2.7
2,620,156	-				+0.2
2,620,156	-				-1.0
2,620,156	-				-1.7
2,620,156	-				-1.6
2,620,225	+		IAI47_12410	0.16	+2.7
2,620,225	+		IAI47_12410	0.16	+0.9
2,620,226	-		IAI47_12410	0.17	+0.3
2,620,226	-		IAI47_12410	0.17	-2.0
2,620,243	+		IAI47_12410	0.21	+2.2
2,620,340	+		IAI47_12410	0.43	+2.3
2,620,340	+		IAI47_12410	0.43	+0.5
2,620,390	+		IAI47_12410	0.55	+1.5
2,620,390	+		IAI47_12410	0.55	-0.6
2,620,391	-		IAI47_12410	0.55	+0.2
2,620,391	-		IAI47_12410	0.55	-1.8
2,620,391	-		IAI47_12410	0.55	+0.7
2,620,490	+		IAI47_12410	0.78	+1.4
2,620,490	+		IAI47_12410	0.78	+0.9
2,620,490	+		IAI47_12410	0.78	+2.7
2,620,491	-		IAI47_12410	0.78	-0.1
2,620,491	-		IAI47_12410	0.78	+0.2
2,620,491	-		IAI47_12410	0.78	+2.0
2,620,499	-		IAI47_12410	0.80	+0.7
2,620,504	+		IAI47_12410	0.81	+1.5
2,620,504	+		IAI47_12410	0.81	+2.3
2,620,505	-		IAI47_12410	0.81	+0.8
2,620,505	-		IAI47_12410	0.81	-0.2
2,620,553	+				+1.4
2,620,554	-				-0.3
2,620,554	-				-1.2
2,620,554	-				+0.8
2,620,554	-				+3.9
2,620,567	+				-0.1
2,620,567	+				-1.0
2,620,567	+				-0.4
2,620,568	-				+0.4
2,620,573	+				+2.5
2,620,573	+				+0.7
2,620,573	+				-0.0
2,620,574	-				-1.4
2,620,574	-				+3.1
2,620,630	+				-0.6
2,620,630	+				+0.4
2,620,630	+				-0.1
2,620,630	+				+1.1
2,620,631	-				+1.2
2,620,633	+				-0.4
2,620,636	-				-0.4
2,620,636	-				+1.1
2,620,728	-				-0.3
2,620,845	+		IAI47_12415	0.15	+1.6
2,620,845	+		IAI47_12415	0.15	-0.6
2,620,845	+		IAI47_12415	0.15	+3.2
2,620,845	+		IAI47_12415	0.15	-0.6
2,620,845	+		IAI47_12415	0.15	-1.6
2,620,846	-		IAI47_12415	0.15	+0.3
2,620,846	-		IAI47_12415	0.15	-2.6
2,620,846	-		IAI47_12415	0.15	+0.4
2,620,846	-		IAI47_12415	0.15	-0.0
2,620,846	-		IAI47_12415	0.15	+1.3
2,620,846	-		IAI47_12415	0.15	-1.8
2,620,846	-		IAI47_12415	0.15	-1.2
2,620,850	+		IAI47_12415	0.16	+0.0
2,620,850	+		IAI47_12415	0.16	+2.0
2,620,850	+		IAI47_12415	0.16	-0.2
2,620,850	+		IAI47_12415	0.16	-0.3
2,620,850	+		IAI47_12415	0.16	-1.0
2,620,851	-		IAI47_12415	0.16	+0.4
2,620,851	-		IAI47_12415	0.16	+2.1
2,620,851	-		IAI47_12415	0.16	-0.9
2,620,851	-		IAI47_12415	0.16	-0.4
2,620,851	-		IAI47_12415	0.16	-0.6
2,620,851	-		IAI47_12415	0.16	+0.8
2,620,851	-		IAI47_12415	0.16	+0.2
2,620,851	-		IAI47_12415	0.16	+0.9
2,620,873	+		IAI47_12415	0.19	-1.5
2,620,873	+		IAI47_12415	0.19	+1.8
2,620,874	-		IAI47_12415	0.19	-0.5
2,620,874	-		IAI47_12415	0.19	-0.3
2,620,928	+		IAI47_12415	0.26	-0.2
2,620,928	+		IAI47_12415	0.26	+1.2
2,620,929	-		IAI47_12415	0.26	-2.4
2,620,964	+		IAI47_12415	0.31	+0.7
2,620,964	+		IAI47_12415	0.31	+0.0
2,620,964	+		IAI47_12415	0.31	+0.8
2,620,986	+		IAI47_12415	0.34	+3.1
2,620,986	+		IAI47_12415	0.34	-0.9
2,620,987	-		IAI47_12415	0.34	+2.1
2,620,987	-		IAI47_12415	0.34	-2.7
2,620,991	+		IAI47_12415	0.34	-0.3
2,620,991	+		IAI47_12415	0.34	-0.5
2,620,991	+		IAI47_12415	0.34	-1.1
2,620,991	+		IAI47_12415	0.34	-0.2
2,620,991	+		IAI47_12415	0.34	-0.1
2,620,991	+		IAI47_12415	0.34	-0.1
2,620,991	+		IAI47_12415	0.34	-1.2
2,620,991	+		IAI47_12415	0.34	-0.5
2,620,992	-		IAI47_12415	0.35	+0.9
2,620,992	-		IAI47_12415	0.35	-1.2
2,620,992	-		IAI47_12415	0.35	+0.2
2,620,992	-		IAI47_12415	0.35	-0.9
2,620,992	-		IAI47_12415	0.35	-0.7
2,620,992	-		IAI47_12415	0.35	-1.6
2,620,992	-		IAI47_12415	0.35	-0.7
2,620,992	-		IAI47_12415	0.35	+2.5
2,620,992	-		IAI47_12415	0.35	+2.5
2,620,992	-		IAI47_12415	0.35	+0.7
2,620,992	-		IAI47_12415	0.35	-0.6
2,620,992	-		IAI47_12415	0.35	-1.2
2,620,998	+		IAI47_12415	0.35	+1.3
2,620,998	+		IAI47_12415	0.35	+0.3
2,620,999	-		IAI47_12415	0.35	-1.3
2,620,999	-		IAI47_12415	0.35	-0.1
2,621,030	+		IAI47_12415	0.40	+0.3
2,621,030	+		IAI47_12415	0.40	-1.1
2,621,030	+		IAI47_12415	0.40	-1.5
2,621,031	-		IAI47_12415	0.40	-1.4
2,621,037	-		IAI47_12415	0.41	-0.1
2,621,109	+		IAI47_12415	0.50	+0.6
2,621,109	+		IAI47_12415	0.50	+1.0
2,621,109	+		IAI47_12415	0.50	-0.6
2,621,110	-		IAI47_12415	0.50	-0.8
2,621,110	-		IAI47_12415	0.50	+1.2
2,621,110	-		IAI47_12415	0.50	-0.2
2,621,110	-		IAI47_12415	0.50	-0.5
2,621,110	-		IAI47_12415	0.50	-1.8
2,621,110	-		IAI47_12415	0.50	-0.4
2,621,142	+		IAI47_12415	0.54	+0.8
2,621,142	+		IAI47_12415	0.54	-0.1
2,621,142	+		IAI47_12415	0.54	+1.6
2,621,142	+		IAI47_12415	0.54	+0.6
2,621,142	+		IAI47_12415	0.54	-0.8
2,621,143	-		IAI47_12415	0.55	-0.8
2,621,143	-		IAI47_12415	0.55	+1.4
2,621,143	-		IAI47_12415	0.55	+0.6
2,621,241	-		IAI47_12415	0.68	+0.2
2,621,241	-		IAI47_12415	0.68	-1.4
2,621,349	+		IAI47_12415	0.82	-1.5
2,621,452	+				-0.6
2,621,452	+				-1.7
2,621,452	+				+0.6
2,621,453	-				+1.0
2,621,453	-				-0.7
2,621,464	+				+0.9
2,621,483	+				-1.3
2,621,483	+				-1.0
2,621,483	+				-0.0
2,621,553	+				+1.3
2,621,553	+				+1.0
2,621,555	+				-0.2
2,621,555	+				-0.2
2,621,556	-				+1.2
2,621,556	-				+1.2
2,621,556	-				-1.8
2,621,560	+				-1.4
2,621,567	-				+0.5
2,621,585	+				+1.3
2,621,592	+				+1.4
2,621,605	+				-0.4
2,621,651	-				-0.4
2,621,654	+				-2.0
2,621,655	-				+1.2
2,621,663	+				-0.3
2,621,664	-				-1.6
2,621,665	+				+1.3
2,621,671	+				-1.2
2,621,686	+				+0.9
2,621,686	+				+0.6
2,621,686	+				-0.9
2,621,789	+				+0.2
2,621,873	+				+2.4
2,621,873	+				+0.8
2,621,873	+				-0.3
2,621,873	+				+4.3
2,621,874	-				+1.1
2,621,874	-				+1.2
2,621,874	-				+4.0
2,621,874	-				-0.2
2,621,874	-				-0.6
2,621,884	+				-1.0
2,621,884	+				+1.7
2,621,884	+				+0.6
2,621,884	+				+0.4
2,621,884	+				-0.9
2,621,884	+				-1.7
2,621,884	+				+0.4
2,621,884	+				-0.2
2,621,884	+				+0.2
2,621,884	+				+0.3
2,621,885	-				-0.8
2,621,885	-				+0.6
2,621,885	-				+0.5
2,621,885	-				-0.6
2,621,885	-				+1.2
2,621,885	-				-1.3
2,621,885	-				+0.4
2,621,886	+				+0.9
2,621,886	+				+0.9
2,621,886	+				+0.4
2,621,886	+				+1.9
2,621,886	+				-0.4
2,621,887	-				+0.2
2,621,887	-				-1.1
2,621,887	-				+1.2
2,621,887	-				+1.0
2,621,887	-				+0.4
2,621,889	+				-0.1
2,621,889	+				-1.1
2,621,890	-				+0.0
2,621,890	-				-0.1
2,621,890	-				+0.4
2,622,008	+		IAI47_12420	0.50	-1.8
2,622,008	+		IAI47_12420	0.50	-2.7
2,622,012	+		IAI47_12420	0.51	-1.3
2,622,013	+		IAI47_12420	0.52	-2.5
2,622,013	-		IAI47_12420	0.52	+3.7
2,622,013	-		IAI47_12420	0.52	-0.2
2,622,015	+		IAI47_12420	0.52	+0.4
2,622,015	+		IAI47_12420	0.52	+1.5
2,622,016	-		IAI47_12420	0.53	+1.9
2,622,016	-		IAI47_12420	0.53	+0.9
2,622,024	+		IAI47_12420	0.56	+1.6
2,622,025	-		IAI47_12420	0.56	-1.5
2,622,025	-		IAI47_12420	0.56	+0.7
2,622,025	-		IAI47_12420	0.56	-0.5
2,622,036	+		IAI47_12420	0.61	+0.7
2,622,036	+		IAI47_12420	0.61	+1.3
2,622,037	-		IAI47_12420	0.61	+0.8
2,622,037	-		IAI47_12420	0.61	+1.3
2,622,037	-		IAI47_12420	0.61	+0.4
2,622,078	+		IAI47_12420	0.77	+0.8
2,622,078	+		IAI47_12420	0.77	-0.3
2,622,079	-		IAI47_12420	0.77	+1.9
2,622,079	-		IAI47_12420	0.77	-0.6
2,622,082	+		IAI47_12420	0.78	-0.6
2,622,082	+		IAI47_12420	0.78	+0.3
2,622,083	-		IAI47_12420	0.79	-1.3
2,622,136	+				+0.9
2,622,136	+				-0.9
2,622,137	-				-0.7
2,622,137	-				-0.7
2,622,199	+				-1.2
2,622,199	+				+2.6
2,622,199	+				-0.2
2,622,199	+				-0.8
2,622,199	+				-1.9
2,622,199	+				-1.0
2,622,200	-				+0.0
2,622,200	-				-0.6
2,622,200	-				-2.2
2,622,256	+				-0.7
2,622,256	+				+1.3
2,622,256	+				+0.4
2,622,256	+				+0.8
2,622,256	+				+1.2
2,622,256	+				+0.1
2,622,256	+				+1.4
2,622,256	+				+1.7
2,622,256	+				+3.0
2,622,257	-				+1.1
2,622,257	-				+3.0
2,622,257	-				+0.2
2,622,275	+				+0.6
2,622,324	-				+0.6
2,622,385	+				-0.1
2,622,385	+				+0.7
2,622,404	-				+0.9
2,622,431	+		IAI47_12425	0.10	+0.9
2,622,432	-		IAI47_12425	0.10	-0.2
2,622,442	+		IAI47_12425	0.11	-0.7
2,622,442	+		IAI47_12425	0.11	-2.0
2,622,442	+		IAI47_12425	0.11	+1.1
2,622,443	-		IAI47_12425	0.11	+0.3
2,622,443	-		IAI47_12425	0.11	+0.3
2,622,449	+		IAI47_12425	0.11	-0.8
2,622,450	-		IAI47_12425	0.12	-0.5
2,622,450	-		IAI47_12425	0.12	-1.1