Strain Fitness in Pantoea sp. MT58 around IAI47_07900

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,674,043	+		IAI47_07895	0.45	-1.0
1,674,070	+		IAI47_07895	0.49	+1.1
1,674,070	+		IAI47_07895	0.49	+0.1
1,674,070	+		IAI47_07895	0.49	+1.1
1,674,070	+		IAI47_07895	0.49	-0.8
1,674,070	+		IAI47_07895	0.49	+0.2
1,674,071	-		IAI47_07895	0.49	-1.6
1,674,071	-		IAI47_07895	0.49	+1.2
1,674,093	+		IAI47_07895	0.52	-0.4
1,674,094	-		IAI47_07895	0.53	+0.6
1,674,094	-		IAI47_07895	0.53	-0.3
1,674,094	-		IAI47_07895	0.53	-0.1
1,674,129	+		IAI47_07895	0.58	+0.8
1,674,129	+		IAI47_07895	0.58	+2.5
1,674,188	+		IAI47_07895	0.66	+0.5
1,674,188	+		IAI47_07895	0.66	-0.3
1,674,188	+		IAI47_07895	0.66	-0.4
1,674,188	+		IAI47_07895	0.66	-1.6
1,674,188	+		IAI47_07895	0.66	+1.0
1,674,188	+		IAI47_07895	0.66	-2.7
1,674,188	+		IAI47_07895	0.66	+0.4
1,674,189	-		IAI47_07895	0.67	+1.0
1,674,189	-		IAI47_07895	0.67	-0.1
1,674,189	-		IAI47_07895	0.67	+1.5
1,674,219	+		IAI47_07895	0.71	-0.1
1,674,219	+		IAI47_07895	0.71	+0.2
1,674,219	+		IAI47_07895	0.71	+0.7
1,674,220	-		IAI47_07895	0.71	+0.5
1,674,220	-		IAI47_07895	0.71	+0.0
1,674,220	-		IAI47_07895	0.71	+1.1
1,674,220	-		IAI47_07895	0.71	-0.0
1,674,249	+		IAI47_07895	0.75	-0.4
1,674,265	+		IAI47_07895	0.78	+0.5
1,674,265	+		IAI47_07895	0.78	-0.3
1,674,334	+		IAI47_07895	0.88	-1.0
1,674,334	+		IAI47_07895	0.88	-1.3
1,674,335	-		IAI47_07895	0.88	+1.1
1,674,335	-		IAI47_07895	0.88	+0.4
1,674,335	-		IAI47_07895	0.88	+0.5
1,674,335	-		IAI47_07895	0.88	-2.5
1,674,421	-				-1.1
1,674,431	+				-1.8
1,674,432	-				+0.6
1,674,434	+				-0.2
1,674,434	+				+0.7
1,674,437	+				+0.0
1,674,437	+				-2.3
1,674,437	+				-0.5
1,674,437	+				-0.4
1,674,438	-				-0.1
1,674,449	-				-0.6
1,674,449	-				+0.3
1,674,456	+				-0.3
1,674,456	+				-0.6
1,674,456	+				+0.4
1,674,456	+				+0.9
1,674,457	-				+1.0
1,674,492	-				-1.8
1,674,501	-				+0.1
1,674,541	+				-0.5
1,674,559	+				-0.8
1,674,599	+				-1.5
1,674,599	+				+0.6
1,674,600	-				-1.1
1,674,600	-				+0.2
1,674,603	+				-1.4
1,674,604	-				-0.3
1,674,604	-				-0.2
1,674,626	+				-0.8
1,674,635	+				-0.3
1,674,635	+				-0.7
1,674,635	+				+0.2
1,674,635	+				+0.2
1,674,635	+				-1.5
1,674,636	-				-0.9
1,674,636	-				+0.0
1,674,641	-				-1.3
1,674,641	-				+0.9
1,674,641	-				+0.1
1,674,641	-				+0.4
1,674,645	+				-0.7
1,674,645	+				-0.0
1,674,645	+				+1.3
1,674,645	+				+0.5
1,674,645	+				+1.6
1,674,647	+				+1.2
1,674,647	+				+0.1
1,674,648	-				+0.2
1,674,648	-				-0.9
1,674,709	+				-1.6
1,674,710	-				+0.2
1,674,745	-				-0.2
1,674,861	+				+0.3
1,674,861	+				+0.4
1,674,862	-				+1.2
1,674,863	+				+1.7
1,674,863	+				+0.4
1,674,863	+				+0.7
1,674,863	+				+0.2
1,674,863	+				+1.0
1,674,863	+				-1.4
1,674,863	+				-0.4
1,674,864	-				+0.2
1,674,864	-				+1.0
1,674,864	-				+2.0
1,674,864	-				+0.7
1,674,930	+				-0.6
1,674,956	+				+0.6
1,674,957	-				+1.7
1,675,011	+				-1.0
1,675,011	+				+1.0
1,675,012	-				+1.7
1,675,021	+				-2.8
1,675,021	+				-0.4
1,675,021	+				+0.4
1,675,021	+				+1.5
1,675,021	+				+0.9
1,675,022	-				+0.3
1,675,022	-				-0.3
1,675,022	-				+2.1
1,675,022	-				+3.2
1,675,022	-				-0.6
1,675,022	-				+0.9
1,675,022	-				+0.7
1,675,026	+				+0.1
1,675,026	+				+0.7
1,675,026	+				+0.1
1,675,026	+				-0.1
1,675,026	+				-1.1
1,675,026	+				+0.0
1,675,026	+				+1.8
1,675,026	+				-0.2
1,675,026	+				+0.7
1,675,026	+				-0.1
1,675,026	+				-0.2
1,675,026	+				-1.9
1,675,026	+				-1.1
1,675,027	-				+0.4
1,675,027	-				-1.3
1,675,027	-				+1.6
1,675,027	-				-0.3
1,675,027	-				-0.1
1,675,027	-				-0.1
1,675,027	-				+0.5
1,675,027	-				+3.0
1,675,027	-				+0.8
1,675,027	-				-1.2
1,675,027	-				-1.4
1,675,027	-				-1.2
1,675,027	-				+1.4
1,675,027	-				+0.2
1,675,027	-				-0.8
1,675,027	-				-0.8
1,675,027	-				+1.2
1,675,027	-				+0.8
1,675,027	-				-0.0
1,675,027	-				+0.2
1,675,027	-				+0.4
1,675,027	-				+0.2
1,675,027	-				+2.6
1,675,104	+		IAI47_07900	0.11	-1.1
1,675,105	-		IAI47_07900	0.11	-1.1
1,675,115	+		IAI47_07900	0.12	-0.7
1,675,115	+		IAI47_07900	0.12	-0.4
1,675,116	-		IAI47_07900	0.13	+0.7
1,675,116	-		IAI47_07900	0.13	-1.2
1,675,155	+		IAI47_07900	0.18	+1.5
1,675,156	-		IAI47_07900	0.18	+0.7
1,675,175	+		IAI47_07900	0.21	+1.1
1,675,176	-		IAI47_07900	0.21	+0.5
1,675,209	+		IAI47_07900	0.26	+0.2
1,675,209	+		IAI47_07900	0.26	-2.4
1,675,209	+		IAI47_07900	0.26	+4.2
1,675,252	+		IAI47_07900	0.32	+1.7
1,675,252	+		IAI47_07900	0.32	+0.6
1,675,252	+		IAI47_07900	0.32	+0.4
1,675,252	+		IAI47_07900	0.32	-1.8
1,675,253	-		IAI47_07900	0.32	+1.8
1,675,253	-		IAI47_07900	0.32	-1.2
1,675,253	-		IAI47_07900	0.32	+0.7
1,675,386	+		IAI47_07900	0.51	+0.3
1,675,386	+		IAI47_07900	0.51	+0.0
1,675,386	+		IAI47_07900	0.51	-0.2
1,675,387	-		IAI47_07900	0.51	+0.0
1,675,479	-		IAI47_07900	0.64	+4.1
1,675,527	+		IAI47_07900	0.71	+0.9
1,675,527	+		IAI47_07900	0.71	-0.2
1,675,527	+		IAI47_07900	0.71	+1.4
1,675,528	-		IAI47_07900	0.71	-0.8
1,675,528	-		IAI47_07900	0.71	-0.3
1,675,528	-		IAI47_07900	0.71	+1.0
1,675,528	-		IAI47_07900	0.71	+1.0
1,675,528	-		IAI47_07900	0.71	-1.1
1,675,528	-		IAI47_07900	0.71	+1.5
1,675,603	+		IAI47_07900	0.82	+0.0
1,675,604	+		IAI47_07900	0.82	+0.2
1,675,604	+		IAI47_07900	0.82	+0.7
1,675,604	+		IAI47_07900	0.82	-0.9
1,675,605	-		IAI47_07900	0.82	-2.0
1,675,605	-		IAI47_07900	0.82	-0.7
1,675,605	-		IAI47_07900	0.82	-0.6
1,675,605	-		IAI47_07900	0.82	+1.4
1,675,614	+		IAI47_07900	0.83	+0.2
1,675,615	-		IAI47_07900	0.83	+0.8
1,675,636	+		IAI47_07900	0.86	+0.4
1,675,636	+		IAI47_07900	0.86	+0.8
1,675,636	+		IAI47_07900	0.86	-0.1
1,675,637	-		IAI47_07900	0.87	-0.1
1,675,637	-		IAI47_07900	0.87	+1.1
1,675,637	-		IAI47_07900	0.87	-0.8
1,675,651	+		IAI47_07900	0.89	-1.1
1,675,652	-		IAI47_07900	0.89	+1.1
1,675,695	-				-0.8
1,675,695	-				-1.5
1,675,726	+				-0.8
1,675,737	+				-0.2
1,675,745	+				-0.6
1,675,745	+				-0.8
1,675,745	+				+0.1
1,675,745	+				-0.1
1,675,745	+				-0.1
1,675,745	+				+0.3
1,675,745	+				+0.5
1,675,745	+				-0.2
1,675,745	+				-0.6
1,675,745	+				-1.0
1,675,746	-				+1.0
1,675,746	-				+0.9
1,675,746	-				-0.2
1,675,746	-				+0.9
1,675,746	-				-0.9
1,675,746	-				+1.6
1,675,746	-				+1.0
1,675,746	-				+1.6
1,675,746	-				+1.7
1,675,747	+				-0.9
1,675,747	+				-1.8
1,675,747	+				+0.3
1,675,747	+				+0.2
1,675,747	+				-0.3
1,675,747	+				+0.9
1,675,747	+				-0.9
1,675,747	+				-0.0
1,675,747	+				+1.6
1,675,747	+				+0.0
1,675,748	-				+3.7
1,675,748	-				+0.7
1,675,748	-				-1.6
1,675,748	-				-0.5
1,675,750	+				+0.7
1,675,751	-				+1.1
1,675,751	-				+0.7
1,675,751	-				+0.5
1,675,751	-				-0.4
1,675,778	-				+0.3
1,675,781	+				-0.4
1,675,817	+				-1.3
1,675,823	-				-0.0
1,675,860	-		IAI47_07905	0.20	+1.8
1,676,083	-				+0.9
1,676,129	+				-0.2
1,676,130	-				-0.5
1,676,130	-				-0.4
1,676,146	+				+1.4
1,676,146	+				-0.9
1,676,146	+				-1.0
1,676,146	+				+0.8
1,676,146	+				-3.1
1,676,146	+				+0.5
1,676,146	+				+0.0
1,676,146	+				+1.1
1,676,147	-				-0.1
1,676,147	-				-0.8
1,676,147	-				-1.8
1,676,147	-				+0.1
1,676,147	-				+0.5
1,676,147	-				-0.9
1,676,147	-				+0.0
1,676,147	-				+0.1
1,676,147	-				-1.9
1,676,147	-				+2.2
1,676,147	-				-0.1
1,676,148	+				+0.5
1,676,148	+				+0.8
1,676,148	+				+0.4
1,676,148	+				-1.2
1,676,148	+				+0.4
1,676,148	+				-0.1
1,676,148	+				+1.0
1,676,148	+				-0.4
1,676,148	+				+0.5
1,676,148	+				+0.5
1,676,148	+				+0.8
1,676,148	+				+2.2
1,676,148	+				+0.5
1,676,149	-				+1.3
1,676,149	-				+0.9
1,676,149	-				+0.5
1,676,149	-				-1.1
1,676,149	-				+3.0
1,676,149	-				-2.0
1,676,149	-				-2.2
1,676,149	-				-0.5
1,676,149	-				+1.1
1,676,149	-				-1.3
1,676,149	-				-0.1
1,676,149	-				-0.5
1,676,149	-				+0.8
1,676,149	-				-1.2
1,676,149	-				+0.1
1,676,214	+				+2.3
1,676,215	-				+1.5
1,676,215	-				+1.3
1,676,216	+				-0.8
1,676,216	+				+0.4
1,676,217	-				+0.1
1,676,217	-				+0.5
1,676,217	-				+1.2
1,676,325	+		IAI47_07910	0.14	+0.2
1,676,325	+		IAI47_07910	0.14	+0.8
1,676,325	+		IAI47_07910	0.14	+0.8
1,676,325	+		IAI47_07910	0.14	-0.9
1,676,325	+		IAI47_07910	0.14	+0.0
1,676,326	-		IAI47_07910	0.14	-1.7
1,676,326	-		IAI47_07910	0.14	+0.9
1,676,326	-		IAI47_07910	0.14	+1.0
1,676,326	-		IAI47_07910	0.14	+0.9
1,676,326	-		IAI47_07910	0.14	-0.3
1,676,403	+		IAI47_07910	0.20	+0.5
1,676,403	+		IAI47_07910	0.20	-1.7
1,676,404	-		IAI47_07910	0.20	+0.8
1,676,404	-		IAI47_07910	0.20	+1.1
1,676,404	-		IAI47_07910	0.20	-1.8
1,676,405	+		IAI47_07910	0.20	+1.6
1,676,405	+		IAI47_07910	0.20	-0.1
1,676,405	+		IAI47_07910	0.20	+1.3
1,676,405	+		IAI47_07910	0.20	-1.3
1,676,406	-		IAI47_07910	0.20	+3.1
1,676,406	-		IAI47_07910	0.20	-2.2
1,676,406	-		IAI47_07910	0.20	+2.4
1,676,406	-		IAI47_07910	0.20	+0.2
1,676,406	-		IAI47_07910	0.20	+2.2
1,676,406	-		IAI47_07910	0.20	-0.1
1,676,406	-		IAI47_07910	0.20	+2.1
1,676,406	-		IAI47_07910	0.20	-0.3
1,676,445	+		IAI47_07910	0.23	+1.7
1,676,445	+		IAI47_07910	0.23	-1.8
1,676,445	+		IAI47_07910	0.23	+0.7
1,676,446	-		IAI47_07910	0.23	+1.3
1,676,446	-		IAI47_07910	0.23	+1.2
1,676,457	+		IAI47_07910	0.24	-0.1
1,676,457	+		IAI47_07910	0.24	+0.6
1,676,491	-		IAI47_07910	0.26	+0.1
1,676,505	-		IAI47_07910	0.27	-0.8
1,676,510	+		IAI47_07910	0.28	-1.5
1,676,511	-		IAI47_07910	0.28	-0.3
1,676,516	+		IAI47_07910	0.28	+0.8
1,676,516	+		IAI47_07910	0.28	-1.0
1,676,517	-		IAI47_07910	0.28	-1.5
1,676,517	-		IAI47_07910	0.28	-1.5
1,676,517	-		IAI47_07910	0.28	-0.2
1,676,524	+		IAI47_07910	0.29	+0.0
1,676,524	+		IAI47_07910	0.29	-1.8
1,676,525	-		IAI47_07910	0.29	+0.3
1,676,525	-		IAI47_07910	0.29	-0.8
1,676,541	+		IAI47_07910	0.30	+0.4
1,676,542	-		IAI47_07910	0.30	+1.7
1,676,542	-		IAI47_07910	0.30	-0.8
1,676,542	-		IAI47_07910	0.30	+1.2
1,676,542	-		IAI47_07910	0.30	-0.5
1,676,543	+		IAI47_07910	0.30	-0.6
1,676,543	+		IAI47_07910	0.30	+0.0
1,676,543	+		IAI47_07910	0.30	-0.1
1,676,543	+		IAI47_07910	0.30	+0.9
1,676,543	+		IAI47_07910	0.30	+1.9
1,676,544	-		IAI47_07910	0.30	+0.5
1,676,544	-		IAI47_07910	0.30	+2.2
1,676,544	-		IAI47_07910	0.30	-0.4
1,676,544	-		IAI47_07910	0.30	-0.8
1,676,544	-		IAI47_07910	0.30	-1.0
1,676,544	-		IAI47_07910	0.30	-0.0
1,676,625	+		IAI47_07910	0.36	-0.0
1,676,626	-		IAI47_07910	0.36	+0.7