Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03900 and IAI47_03905 are separated by 118 nucleotides IAI47_03905 and IAI47_03910 are separated by 99 nucleotides IAI47_03910 and IAI47_03915 are separated by 684 nucleotides
IAI47_03900: IAI47_03900 - YgdI/YgdR family lipoprotein, at 813,202 to 813,420
_03900
IAI47_03905: IAI47_03905 - TerC family protein, at 813,539 to 814,249
_03905
IAI47_03910: IAI47_03910 - DNA mismatch repair endonuclease MutH, at 814,349 to 815,026
_03910
IAI47_03915: IAI47_03915 - RNA pyrophosphohydrolase, at 815,711 to 816,238
_03915
Position (kb) 814
815
816 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 813.350 kb on + strand, within IAI47_03900 at 813.350 kb on + strand, within IAI47_03900 at 813.350 kb on + strand, within IAI47_03900 at 813.350 kb on + strand, within IAI47_03900 at 813.350 kb on + strand, within IAI47_03900 at 813.350 kb on + strand, within IAI47_03900 at 813.350 kb on + strand, within IAI47_03900 at 813.350 kb on + strand, within IAI47_03900 at 813.351 kb on - strand, within IAI47_03900 at 813.351 kb on - strand, within IAI47_03900 at 813.351 kb on - strand, within IAI47_03900 at 813.370 kb on + strand, within IAI47_03900 at 813.370 kb on + strand, within IAI47_03900 at 813.370 kb on + strand, within IAI47_03900 at 813.371 kb on - strand, within IAI47_03900 at 813.371 kb on - strand, within IAI47_03900 at 813.371 kb on - strand, within IAI47_03900 at 813.371 kb on - strand, within IAI47_03900 at 813.401 kb on - strand at 813.401 kb on - strand at 813.401 kb on - strand at 813.401 kb on - strand at 813.459 kb on + strand at 813.459 kb on + strand at 813.459 kb on + strand at 813.459 kb on + strand at 813.460 kb on - strand at 813.460 kb on - strand at 813.460 kb on - strand at 813.460 kb on - strand at 813.460 kb on - strand at 813.460 kb on - strand at 813.460 kb on - strand at 813.462 kb on + strand at 813.462 kb on + strand at 813.462 kb on + strand at 813.462 kb on + strand at 813.463 kb on - strand at 813.463 kb on - strand at 813.465 kb on + strand at 813.465 kb on + strand at 813.465 kb on + strand at 813.465 kb on + strand at 813.465 kb on + strand at 813.466 kb on - strand at 813.466 kb on - strand at 813.466 kb on - strand at 813.466 kb on - strand at 813.466 kb on - strand at 813.466 kb on - strand at 813.466 kb on - strand at 813.488 kb on - strand at 813.507 kb on + strand at 813.507 kb on + strand at 813.507 kb on + strand at 813.507 kb on + strand at 813.508 kb on - strand at 813.537 kb on + strand at 813.538 kb on - strand at 813.538 kb on - strand at 813.556 kb on + strand at 813.571 kb on + strand at 813.572 kb on - strand at 813.572 kb on - strand at 813.609 kb on + strand at 813.609 kb on + strand at 813.609 kb on + strand at 813.610 kb on - strand, within IAI47_03905 at 813.610 kb on - strand, within IAI47_03905 at 813.615 kb on + strand, within IAI47_03905 at 813.615 kb on + strand, within IAI47_03905 at 813.616 kb on - strand, within IAI47_03905 at 813.626 kb on + strand, within IAI47_03905 at 813.627 kb on - strand, within IAI47_03905 at 813.659 kb on - strand, within IAI47_03905 at 813.659 kb on - strand, within IAI47_03905 at 813.659 kb on - strand, within IAI47_03905 at 813.784 kb on + strand, within IAI47_03905 at 813.784 kb on + strand, within IAI47_03905 at 813.784 kb on + strand, within IAI47_03905 at 813.784 kb on + strand, within IAI47_03905 at 813.785 kb on - strand, within IAI47_03905 at 813.785 kb on - strand, within IAI47_03905 at 813.820 kb on + strand, within IAI47_03905 at 813.820 kb on + strand, within IAI47_03905 at 813.821 kb on - strand, within IAI47_03905 at 813.821 kb on - strand, within IAI47_03905 at 813.841 kb on + strand, within IAI47_03905 at 813.842 kb on - strand, within IAI47_03905 at 813.856 kb on + strand, within IAI47_03905 at 813.856 kb on + strand, within IAI47_03905 at 813.856 kb on + strand, within IAI47_03905 at 813.856 kb on + strand, within IAI47_03905 at 813.856 kb on + strand, within IAI47_03905 at 813.857 kb on - strand, within IAI47_03905 at 813.857 kb on - strand, within IAI47_03905 at 813.857 kb on - strand, within IAI47_03905 at 813.857 kb on - strand, within IAI47_03905 at 813.857 kb on - strand, within IAI47_03905 at 813.863 kb on + strand, within IAI47_03905 at 813.863 kb on + strand, within IAI47_03905 at 813.864 kb on - strand, within IAI47_03905 at 813.898 kb on + strand, within IAI47_03905 at 813.898 kb on + strand, within IAI47_03905 at 813.898 kb on + strand, within IAI47_03905 at 813.898 kb on + strand, within IAI47_03905 at 813.898 kb on + strand, within IAI47_03905 at 813.898 kb on + strand, within IAI47_03905 at 813.899 kb on - strand, within IAI47_03905 at 813.899 kb on - strand, within IAI47_03905 at 813.899 kb on - strand, within IAI47_03905 at 813.899 kb on - strand, within IAI47_03905 at 813.899 kb on - strand, within IAI47_03905 at 813.899 kb on - strand, within IAI47_03905 at 813.899 kb on - strand, within IAI47_03905 at 813.899 kb on - strand, within IAI47_03905 at 813.899 kb on - strand, within IAI47_03905 at 813.899 kb on - strand, within IAI47_03905 at 814.019 kb on - strand, within IAI47_03905 at 814.030 kb on + strand, within IAI47_03905 at 814.030 kb on + strand, within IAI47_03905 at 814.030 kb on + strand, within IAI47_03905 at 814.030 kb on + strand, within IAI47_03905 at 814.054 kb on + strand, within IAI47_03905 at 814.055 kb on - strand, within IAI47_03905 at 814.138 kb on + strand, within IAI47_03905 at 814.138 kb on + strand, within IAI47_03905 at 814.139 kb on - strand, within IAI47_03905 at 814.139 kb on - strand, within IAI47_03905 at 814.139 kb on - strand, within IAI47_03905 at 814.139 kb on - strand, within IAI47_03905 at 814.168 kb on + strand, within IAI47_03905 at 814.168 kb on + strand, within IAI47_03905 at 814.168 kb on + strand, within IAI47_03905 at 814.168 kb on + strand, within IAI47_03905 at 814.168 kb on + strand, within IAI47_03905 at 814.168 kb on + strand, within IAI47_03905 at 814.168 kb on + strand, within IAI47_03905 at 814.169 kb on - strand, within IAI47_03905 at 814.169 kb on - strand, within IAI47_03905 at 814.169 kb on - strand, within IAI47_03905 at 814.174 kb on + strand, within IAI47_03905 at 814.175 kb on - strand, within IAI47_03905 at 814.175 kb on - strand, within IAI47_03905 at 814.289 kb on + strand at 814.289 kb on + strand at 814.290 kb on - strand at 814.290 kb on - strand at 814.290 kb on - strand at 814.401 kb on + strand at 814.401 kb on + strand at 814.402 kb on - strand at 814.402 kb on - strand at 814.402 kb on - strand at 814.423 kb on + strand, within IAI47_03910 at 814.423 kb on + strand, within IAI47_03910 at 814.423 kb on + strand, within IAI47_03910 at 814.424 kb on - strand, within IAI47_03910 at 814.424 kb on - strand, within IAI47_03910 at 814.424 kb on - strand, within IAI47_03910 at 814.424 kb on - strand, within IAI47_03910 at 814.447 kb on + strand, within IAI47_03910 at 814.447 kb on + strand, within IAI47_03910 at 814.447 kb on + strand, within IAI47_03910 at 814.447 kb on + strand, within IAI47_03910 at 814.448 kb on - strand, within IAI47_03910 at 814.448 kb on - strand, within IAI47_03910 at 814.448 kb on - strand, within IAI47_03910 at 814.448 kb on - strand, within IAI47_03910 at 814.448 kb on - strand, within IAI47_03910 at 814.465 kb on + strand, within IAI47_03910 at 814.516 kb on + strand, within IAI47_03910 at 814.517 kb on - strand, within IAI47_03910 at 814.538 kb on + strand, within IAI47_03910 at 814.538 kb on + strand, within IAI47_03910 at 814.538 kb on + strand, within IAI47_03910 at 814.538 kb on + strand, within IAI47_03910 at 814.538 kb on + strand, within IAI47_03910 at 814.539 kb on - strand, within IAI47_03910 at 814.539 kb on - strand, within IAI47_03910 at 814.546 kb on + strand, within IAI47_03910 at 814.546 kb on + strand, within IAI47_03910 at 814.546 kb on + strand, within IAI47_03910 at 814.546 kb on + strand, within IAI47_03910 at 814.547 kb on - strand, within IAI47_03910 at 814.547 kb on - strand, within IAI47_03910 at 814.677 kb on - strand, within IAI47_03910 at 814.865 kb on + strand, within IAI47_03910 at 814.865 kb on + strand, within IAI47_03910 at 814.865 kb on + strand, within IAI47_03910 at 814.866 kb on - strand, within IAI47_03910 at 814.866 kb on - strand, within IAI47_03910 at 814.866 kb on - strand, within IAI47_03910 at 814.866 kb on - strand, within IAI47_03910 at 814.894 kb on + strand, within IAI47_03910 at 814.894 kb on + strand, within IAI47_03910 at 814.894 kb on + strand, within IAI47_03910 at 814.895 kb on - strand, within IAI47_03910 at 814.903 kb on + strand, within IAI47_03910 at 814.955 kb on + strand, within IAI47_03910 at 814.955 kb on + strand, within IAI47_03910 at 814.956 kb on - strand, within IAI47_03910 at 815.019 kb on + strand at 815.020 kb on - strand at 815.020 kb on - strand at 815.032 kb on + strand at 815.032 kb on + strand at 815.032 kb on + strand at 815.032 kb on + strand at 815.033 kb on - strand at 815.109 kb on + strand at 815.110 kb on - strand at 815.112 kb on + strand at 815.112 kb on + strand at 815.112 kb on + strand at 815.112 kb on + strand at 815.112 kb on + strand at 815.112 kb on + strand at 815.113 kb on - strand at 815.113 kb on - strand at 815.120 kb on + strand at 815.120 kb on + strand at 815.121 kb on - strand at 815.121 kb on - strand at 815.121 kb on - strand at 815.175 kb on + strand at 815.175 kb on + strand at 815.185 kb on + strand at 815.248 kb on - strand at 815.271 kb on + strand at 815.271 kb on + strand at 815.271 kb on + strand at 815.271 kb on + strand at 815.272 kb on - strand at 815.272 kb on - strand at 815.272 kb on - strand at 815.272 kb on - strand at 815.272 kb on - strand at 815.272 kb on - strand at 815.300 kb on + strand at 815.320 kb on - strand at 815.334 kb on - strand at 815.366 kb on + strand at 815.392 kb on + strand at 815.443 kb on + strand at 815.447 kb on + strand at 815.453 kb on - strand at 815.554 kb on + strand at 815.584 kb on - strand at 815.660 kb on + strand at 815.660 kb on + strand at 815.660 kb on + strand at 815.660 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 813,350 + IAI47_03900 0.68 -0.9 813,350 + IAI47_03900 0.68 +0.2 813,350 + IAI47_03900 0.68 +0.7 813,350 + IAI47_03900 0.68 -0.3 813,350 + IAI47_03900 0.68 +0.3 813,350 + IAI47_03900 0.68 +0.2 813,350 + IAI47_03900 0.68 -0.3 813,350 + IAI47_03900 0.68 +0.9 813,351 - IAI47_03900 0.68 +0.0 813,351 - IAI47_03900 0.68 +0.4 813,351 - IAI47_03900 0.68 +0.8 813,370 + IAI47_03900 0.77 -0.1 813,370 + IAI47_03900 0.77 -1.1 813,370 + IAI47_03900 0.77 +0.0 813,371 - IAI47_03900 0.77 +0.2 813,371 - IAI47_03900 0.77 -1.3 813,371 - IAI47_03900 0.77 -1.6 813,371 - IAI47_03900 0.77 +0.3 813,401 - +0.5 813,401 - -0.6 813,401 - +2.8 813,401 - -1.2 813,459 + +0.4 813,459 + +1.0 813,459 + +0.6 813,459 + -0.4 813,460 - +1.7 813,460 - +0.5 813,460 - -1.6 813,460 - +0.3 813,460 - -0.9 813,460 - -0.2 813,460 - -0.1 813,462 + -1.0 813,462 + +0.0 813,462 + +0.3 813,462 + +1.0 813,463 - +0.7 813,463 - -0.5 813,465 + +0.0 813,465 + -0.3 813,465 + -0.4 813,465 + +0.1 813,465 + -0.7 813,466 - -0.7 813,466 - -2.8 813,466 - +0.0 813,466 - +0.8 813,466 - -0.6 813,466 - +0.3 813,466 - +1.3 813,488 - +1.0 813,507 + +0.9 813,507 + -0.2 813,507 + +0.2 813,507 + +2.1 813,508 - -0.4 813,537 + +0.0 813,538 - -1.3 813,538 - -0.5 813,556 + +0.3 813,571 + +0.4 813,572 - +0.0 813,572 - -1.0 813,609 + -0.7 813,609 + -0.6 813,609 + -1.0 813,610 - IAI47_03905 0.10 +2.0 813,610 - IAI47_03905 0.10 -0.2 813,615 + IAI47_03905 0.11 +0.4 813,615 + IAI47_03905 0.11 +0.4 813,616 - IAI47_03905 0.11 -0.2 813,626 + IAI47_03905 0.12 -1.1 813,627 - IAI47_03905 0.12 -1.6 813,659 - IAI47_03905 0.17 +1.4 813,659 - IAI47_03905 0.17 -1.4 813,659 - IAI47_03905 0.17 +0.2 813,784 + IAI47_03905 0.34 +0.9 813,784 + IAI47_03905 0.34 +0.2 813,784 + IAI47_03905 0.34 +0.9 813,784 + IAI47_03905 0.34 -2.9 813,785 - IAI47_03905 0.35 -0.4 813,785 - IAI47_03905 0.35 +0.9 813,820 + IAI47_03905 0.40 -0.0 813,820 + IAI47_03905 0.40 -0.9 813,821 - IAI47_03905 0.40 -0.7 813,821 - IAI47_03905 0.40 +0.2 813,841 + IAI47_03905 0.42 -1.0 813,842 - IAI47_03905 0.43 +2.0 813,856 + IAI47_03905 0.45 -0.1 813,856 + IAI47_03905 0.45 -2.6 813,856 + IAI47_03905 0.45 +0.8 813,856 + IAI47_03905 0.45 +0.7 813,856 + IAI47_03905 0.45 +0.5 813,857 - IAI47_03905 0.45 +1.1 813,857 - IAI47_03905 0.45 -1.3 813,857 - IAI47_03905 0.45 -0.9 813,857 - IAI47_03905 0.45 +2.8 813,857 - IAI47_03905 0.45 -0.2 813,863 + IAI47_03905 0.46 -1.0 813,863 + IAI47_03905 0.46 +0.1 813,864 - IAI47_03905 0.46 +1.4 813,898 + IAI47_03905 0.50 +0.9 813,898 + IAI47_03905 0.50 +0.1 813,898 + IAI47_03905 0.50 +0.2 813,898 + IAI47_03905 0.50 +1.9 813,898 + IAI47_03905 0.50 -0.5 813,898 + IAI47_03905 0.50 -3.0 813,899 - IAI47_03905 0.51 +0.5 813,899 - IAI47_03905 0.51 -0.1 813,899 - IAI47_03905 0.51 -0.2 813,899 - IAI47_03905 0.51 -0.1 813,899 - IAI47_03905 0.51 -1.2 813,899 - IAI47_03905 0.51 -1.5 813,899 - IAI47_03905 0.51 +0.4 813,899 - IAI47_03905 0.51 -1.1 813,899 - IAI47_03905 0.51 +0.0 813,899 - IAI47_03905 0.51 +0.2 814,019 - IAI47_03905 0.68 -2.0 814,030 + IAI47_03905 0.69 -0.1 814,030 + IAI47_03905 0.69 +0.6 814,030 + IAI47_03905 0.69 -0.1 814,030 + IAI47_03905 0.69 +0.6 814,054 + IAI47_03905 0.72 +0.0 814,055 - IAI47_03905 0.73 +1.6 814,138 + IAI47_03905 0.84 +0.1 814,138 + IAI47_03905 0.84 -0.2 814,139 - IAI47_03905 0.84 +1.2 814,139 - IAI47_03905 0.84 -0.8 814,139 - IAI47_03905 0.84 +0.6 814,139 - IAI47_03905 0.84 -0.5 814,168 + IAI47_03905 0.88 +1.1 814,168 + IAI47_03905 0.88 +0.4 814,168 + IAI47_03905 0.88 -2.4 814,168 + IAI47_03905 0.88 +0.0 814,168 + IAI47_03905 0.88 +0.1 814,168 + IAI47_03905 0.88 +1.2 814,168 + IAI47_03905 0.88 -0.1 814,169 - IAI47_03905 0.89 -1.8 814,169 - IAI47_03905 0.89 +0.5 814,169 - IAI47_03905 0.89 -1.6 814,174 + IAI47_03905 0.89 -1.8 814,175 - IAI47_03905 0.89 -1.2 814,175 - IAI47_03905 0.89 -0.1 814,289 + +0.6 814,289 + -1.0 814,290 - -1.4 814,290 - +0.9 814,290 - -0.5 814,401 + -2.0 814,401 + -2.1 814,402 - -1.4 814,402 - +0.8 814,402 - +0.2 814,423 + IAI47_03910 0.11 -1.8 814,423 + IAI47_03910 0.11 -1.6 814,423 + IAI47_03910 0.11 +1.2 814,424 - IAI47_03910 0.11 +0.9 814,424 - IAI47_03910 0.11 -0.7 814,424 - IAI47_03910 0.11 +1.0 814,424 - IAI47_03910 0.11 +2.4 814,447 + IAI47_03910 0.14 +0.8 814,447 + IAI47_03910 0.14 +0.5 814,447 + IAI47_03910 0.14 -0.1 814,447 + IAI47_03910 0.14 +0.0 814,448 - IAI47_03910 0.15 -1.4 814,448 - IAI47_03910 0.15 +0.1 814,448 - IAI47_03910 0.15 +1.1 814,448 - IAI47_03910 0.15 -0.8 814,448 - IAI47_03910 0.15 -0.4 814,465 + IAI47_03910 0.17 +0.0 814,516 + IAI47_03910 0.25 +1.0 814,517 - IAI47_03910 0.25 +1.3 814,538 + IAI47_03910 0.28 +0.7 814,538 + IAI47_03910 0.28 -0.1 814,538 + IAI47_03910 0.28 +1.4 814,538 + IAI47_03910 0.28 -1.4 814,538 + IAI47_03910 0.28 +0.7 814,539 - IAI47_03910 0.28 +1.9 814,539 - IAI47_03910 0.28 +0.9 814,546 + IAI47_03910 0.29 +0.8 814,546 + IAI47_03910 0.29 +2.4 814,546 + IAI47_03910 0.29 +3.0 814,546 + IAI47_03910 0.29 -0.8 814,547 - IAI47_03910 0.29 +0.7 814,547 - IAI47_03910 0.29 +0.3 814,677 - IAI47_03910 0.48 -1.3 814,865 + IAI47_03910 0.76 -0.5 814,865 + IAI47_03910 0.76 +1.4 814,865 + IAI47_03910 0.76 -1.4 814,866 - IAI47_03910 0.76 -1.6 814,866 - IAI47_03910 0.76 +0.8 814,866 - IAI47_03910 0.76 -0.4 814,866 - IAI47_03910 0.76 -0.9 814,894 + IAI47_03910 0.80 +1.1 814,894 + IAI47_03910 0.80 -1.4 814,894 + IAI47_03910 0.80 +0.8 814,895 - IAI47_03910 0.81 +1.9 814,903 + IAI47_03910 0.82 +0.6 814,955 + IAI47_03910 0.89 -1.7 814,955 + IAI47_03910 0.89 +0.2 814,956 - IAI47_03910 0.90 -0.5 815,019 + +0.7 815,020 - +1.1 815,020 - +0.4 815,032 + +0.9 815,032 + +0.4 815,032 + -1.2 815,032 + -2.5 815,033 - +0.8 815,109 + -1.7 815,110 - -0.2 815,112 + +0.6 815,112 + -0.2 815,112 + -1.6 815,112 + +1.7 815,112 + +1.0 815,112 + -2.3 815,113 - -1.4 815,113 - +0.3 815,120 + -1.2 815,120 + -0.8 815,121 - -0.6 815,121 - -0.4 815,121 - -1.5 815,175 + +2.8 815,175 + -0.6 815,185 + +0.8 815,248 - +0.2 815,271 + +0.0 815,271 + +1.4 815,271 + +0.1 815,271 + -0.8 815,272 - +1.8 815,272 - -0.3 815,272 - +0.6 815,272 - +0.5 815,272 - +0.9 815,272 - -0.1 815,300 + +0.8 815,320 - +0.8 815,334 - +0.5 815,366 + -1.1 815,392 + +3.2 815,443 + -0.6 815,447 + +0.4 815,453 - +0.4 815,554 + +0.3 815,584 - +1.8 815,660 + -0.1 815,660 + +0.4 815,660 + +1.8 815,660 + +0.0
Or see this region's nucleotide sequence