Strain Fitness in Pantoea sp. MT58 around IAI47_00080

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
15,252	+		IAI47_00070	0.53	+0.5
15,252	+		IAI47_00070	0.53	+0.0
15,252	+		IAI47_00070	0.53	-0.4
15,253	-		IAI47_00070	0.53	-0.8
15,253	-		IAI47_00070	0.53	+0.5
15,253	-		IAI47_00070	0.53	+1.2
15,253	-		IAI47_00070	0.53	-0.3
15,253	-		IAI47_00070	0.53	+0.2
15,253	-		IAI47_00070	0.53	-0.3
15,297	+		IAI47_00070	0.58	+0.7
15,297	+		IAI47_00070	0.58	-0.4
15,297	+		IAI47_00070	0.58	-1.4
15,297	+		IAI47_00070	0.58	-1.5
15,297	+		IAI47_00070	0.58	-0.2
15,297	+		IAI47_00070	0.58	-1.0
15,298	-		IAI47_00070	0.58	-0.0
15,298	-		IAI47_00070	0.58	-0.2
15,298	-		IAI47_00070	0.58	+0.9
15,298	-		IAI47_00070	0.58	+0.9
15,298	-		IAI47_00070	0.58	+1.5
15,298	-		IAI47_00070	0.58	-0.6
15,321	+		IAI47_00070	0.60	-2.0
15,321	+		IAI47_00070	0.60	+1.2
15,322	-		IAI47_00070	0.61	+0.8
15,322	-		IAI47_00070	0.61	+1.7
15,322	-		IAI47_00070	0.61	-1.4
15,322	-		IAI47_00070	0.61	+1.5
15,333	+		IAI47_00070	0.62	-0.0
15,333	+		IAI47_00070	0.62	-0.1
15,333	+		IAI47_00070	0.62	+0.6
15,333	+		IAI47_00070	0.62	+0.2
15,333	+		IAI47_00070	0.62	-0.9
15,334	-		IAI47_00070	0.62	+0.9
15,334	-		IAI47_00070	0.62	-0.2
15,334	-		IAI47_00070	0.62	+0.3
15,334	-		IAI47_00070	0.62	-1.3
15,334	-		IAI47_00070	0.62	-0.6
15,384	+		IAI47_00070	0.67	-0.1
15,384	+		IAI47_00070	0.67	-1.9
15,432	+		IAI47_00070	0.73	-1.4
15,432	+		IAI47_00070	0.73	+0.8
15,432	+		IAI47_00070	0.73	-0.4
15,433	-		IAI47_00070	0.73	+0.9
15,492	-		IAI47_00070	0.79	-0.5
15,612	+				+0.7
15,612	+				-1.4
15,613	-				-0.5
15,613	-				-0.5
15,613	-				+0.7
15,613	-				-0.1
15,666	+				-2.1
15,666	+				-0.2
15,666	+				-0.9
15,666	+				-0.7
15,666	+				-0.1
15,667	-				+1.4
15,667	-				+0.0
15,667	-				-1.5
15,667	-				+1.3
15,667	-				+1.5
15,667	-				-1.3
15,667	-				+0.3
15,673	+				+2.5
15,678	-				+0.7
15,732	+				+1.1
15,767	+		IAI47_00075	0.13	-0.9
15,767	+		IAI47_00075	0.13	-2.2
15,768	-		IAI47_00075	0.13	-0.3
15,814	-		IAI47_00075	0.22	-0.7
15,820	+		IAI47_00075	0.23	+1.4
15,820	+		IAI47_00075	0.23	+0.2
15,820	+		IAI47_00075	0.23	-0.6
15,821	-		IAI47_00075	0.24	+0.1
15,982	-		IAI47_00075	0.56	-3.5
16,099	+		IAI47_00075	0.79	+0.7
16,099	+		IAI47_00075	0.79	+0.3
16,099	+		IAI47_00075	0.79	-0.0
16,099	+		IAI47_00075	0.79	-0.4
16,099	+		IAI47_00075	0.79	-0.5
16,100	-		IAI47_00075	0.79	-2.4
16,151	+		IAI47_00075	0.89	-0.8
16,182	+				+0.4
16,182	+				-0.5
16,182	+				-1.3
16,182	+				-1.9
16,229	+				-2.7
16,229	+				+0.5
16,229	+				+1.8
16,229	+				-1.9
16,229	+				+0.2
16,229	+				+0.2
16,230	-				+2.5
16,230	-				-0.0
16,231	-				-0.2
16,247	+				+0.3
16,247	+				-1.8
16,247	+				-0.3
16,247	+				+1.0
16,247	+				+0.8
16,247	+				-1.0
16,248	-				-0.4
16,248	-				-0.1
16,248	-				-1.6
16,248	-				-0.9
16,248	-				+0.3
16,248	-				+1.9
16,260	+				-0.9
16,261	-				+1.1
16,346	+		IAI47_00080	0.12	+0.8
16,346	+		IAI47_00080	0.12	-0.4
16,346	+		IAI47_00080	0.12	-1.3
16,347	-		IAI47_00080	0.13	-1.4
16,347	-		IAI47_00080	0.13	-0.1
16,360	-		IAI47_00080	0.14	-0.4
16,360	-		IAI47_00080	0.14	-1.8
16,367	+		IAI47_00080	0.15	+0.3
16,367	+		IAI47_00080	0.15	+0.5
16,367	+		IAI47_00080	0.15	-0.4
16,367	+		IAI47_00080	0.15	+0.5
16,367	+		IAI47_00080	0.15	-0.3
16,367	+		IAI47_00080	0.15	+0.4
16,367	+		IAI47_00080	0.15	+1.3
16,368	-		IAI47_00080	0.15	-1.4
16,368	-		IAI47_00080	0.15	-0.4
16,368	-		IAI47_00080	0.15	+0.9
16,368	-		IAI47_00080	0.15	-0.4
16,368	-		IAI47_00080	0.15	+1.0
16,368	-		IAI47_00080	0.15	-1.4
16,368	-		IAI47_00080	0.15	+0.7
16,368	-		IAI47_00080	0.15	-0.2
16,368	-		IAI47_00080	0.15	-0.9
16,368	-		IAI47_00080	0.15	-0.8
16,368	-		IAI47_00080	0.15	-0.1
16,368	-		IAI47_00080	0.15	-2.7
16,368	-		IAI47_00080	0.15	+0.8
16,368	-		IAI47_00080	0.15	+0.6
16,368	-		IAI47_00080	0.15	+0.1
16,368	-		IAI47_00080	0.15	+0.8
16,487	+		IAI47_00080	0.30	+0.4
16,487	+		IAI47_00080	0.30	-1.9
16,488	-		IAI47_00080	0.30	-0.6
16,488	-		IAI47_00080	0.30	-0.1
16,488	-		IAI47_00080	0.30	+2.3
16,488	-		IAI47_00080	0.30	-0.1
16,552	+		IAI47_00080	0.38	-1.7
16,553	-		IAI47_00080	0.38	-1.4
16,553	-		IAI47_00080	0.38	-0.5
16,553	-		IAI47_00080	0.38	+1.1
16,553	-		IAI47_00080	0.38	-0.2
16,553	-		IAI47_00080	0.38	-0.9
16,596	+		IAI47_00080	0.44	+0.7
16,596	+		IAI47_00080	0.44	-0.2
16,597	-		IAI47_00080	0.44	+0.3
16,605	+		IAI47_00080	0.45	+1.6
16,606	-		IAI47_00080	0.45	+0.2
16,609	+		IAI47_00080	0.45	+1.0
16,610	-		IAI47_00080	0.45	+0.7
16,647	+		IAI47_00080	0.50	-1.1
16,647	+		IAI47_00080	0.50	+0.2
16,648	-		IAI47_00080	0.50	-0.3
16,658	+		IAI47_00080	0.51	-0.9
16,659	-		IAI47_00080	0.52	-0.8
16,690	+		IAI47_00080	0.55	-0.7
16,690	+		IAI47_00080	0.55	-2.5
16,691	-		IAI47_00080	0.56	-0.1
16,691	-		IAI47_00080	0.56	-0.6
16,727	+		IAI47_00080	0.60	-1.4
16,727	+		IAI47_00080	0.60	-0.4
16,728	-		IAI47_00080	0.60	-0.6
16,796	+		IAI47_00080	0.69	+0.8
16,796	+		IAI47_00080	0.69	-0.9
16,796	+		IAI47_00080	0.69	-0.7
16,797	-		IAI47_00080	0.69	-0.8
16,797	-		IAI47_00080	0.69	+1.2
16,797	-		IAI47_00080	0.69	-1.5
16,797	-		IAI47_00080	0.69	-2.5
16,797	-		IAI47_00080	0.69	+0.0
16,800	+		IAI47_00080	0.69	-0.2
16,801	-		IAI47_00080	0.69	+0.2
16,801	-		IAI47_00080	0.69	-0.1
16,816	-		IAI47_00080	0.71	-0.5
16,816	-		IAI47_00080	0.71	+0.3
16,830	-		IAI47_00080	0.73	-2.9
16,830	-		IAI47_00080	0.73	-0.4
16,942	-		IAI47_00080	0.87	-0.4
16,955	-		IAI47_00080	0.89	-1.1
17,016	+				-0.9
17,017	-				-1.0
17,050	+				-1.5
17,060	+				-1.4
17,060	+				-1.4
17,061	-				+0.6
17,067	+				+1.2
17,067	+				-0.6
17,068	-				+0.5
17,075	-				-1.8
17,087	+				+1.2
17,088	-				+0.8
17,088	-				+1.1
17,121	+				-0.7
17,121	+				+0.8
17,121	+				-0.9
17,122	-				-1.0
17,122	-				-0.7
17,180	+		IAI47_00085	0.18	+0.2
17,181	-		IAI47_00085	0.18	+1.2
17,181	-		IAI47_00085	0.18	-1.8
17,186	-		IAI47_00085	0.19	-1.8
17,305	+		IAI47_00085	0.36	+0.0
17,305	+		IAI47_00085	0.36	-1.5
17,306	-		IAI47_00085	0.36	+0.7
17,306	-		IAI47_00085	0.36	+1.1
17,306	-		IAI47_00085	0.36	+0.9
17,343	+		IAI47_00085	0.41	-0.6
17,343	+		IAI47_00085	0.41	-0.6
17,344	-		IAI47_00085	0.41	+1.2
17,347	+		IAI47_00085	0.42	-2.0
17,347	+		IAI47_00085	0.42	+2.3
17,347	+		IAI47_00085	0.42	-1.3
17,348	-		IAI47_00085	0.42	+1.9
17,348	-		IAI47_00085	0.42	+0.8
17,348	-		IAI47_00085	0.42	-0.1
17,348	-		IAI47_00085	0.42	-1.9
17,356	+		IAI47_00085	0.43	+1.0
17,356	+		IAI47_00085	0.43	-0.7
17,356	+		IAI47_00085	0.43	+2.9
17,356	+		IAI47_00085	0.43	-0.3
17,357	-		IAI47_00085	0.43	-2.1
17,357	-		IAI47_00085	0.43	-1.8
17,357	-		IAI47_00085	0.43	+3.1
17,357	-		IAI47_00085	0.43	+0.4
17,357	-		IAI47_00085	0.43	+0.0
17,401	+		IAI47_00085	0.49	+0.4
17,401	+		IAI47_00085	0.49	+0.7
17,401	+		IAI47_00085	0.49	-0.6
17,402	-		IAI47_00085	0.49	+0.4
17,402	-		IAI47_00085	0.49	-0.3
17,402	-		IAI47_00085	0.49	-1.2
17,402	-		IAI47_00085	0.49	-1.4
17,434	+		IAI47_00085	0.54	+0.6
17,434	+		IAI47_00085	0.54	+1.1
17,434	+		IAI47_00085	0.54	-1.8
17,434	+		IAI47_00085	0.54	+0.5
17,434	+		IAI47_00085	0.54	+1.1
17,434	+		IAI47_00085	0.54	-0.3
17,435	-		IAI47_00085	0.54	-0.9
17,435	-		IAI47_00085	0.54	+0.2
17,435	-		IAI47_00085	0.54	-0.7
17,435	-		IAI47_00085	0.54	-0.5
17,435	-		IAI47_00085	0.54	-0.1
17,435	-		IAI47_00085	0.54	+1.8
17,435	-		IAI47_00085	0.54	-0.1
17,435	-		IAI47_00085	0.54	-0.1
17,737	+				+2.7
17,737	+				-0.7
17,737	+				+0.3
17,737	+				+0.6
17,738	-				+0.0
17,759	+				+0.5
17,759	+				-0.5
17,759	+				-1.5
17,759	+				-1.4
17,759	+				-0.5
17,759	+				-1.4
17,759	+				-2.1
17,759	+				+0.3
17,759	+				-0.2
17,759	+				+1.5
17,759	+				+0.7
17,759	+				-1.8
17,759	+				-0.5
17,760	-				+1.0
17,760	-				+1.4
17,760	-				-0.6
17,760	-				-1.0
17,760	-				-0.8
17,760	-				+0.2
17,760	-				+0.0
17,760	-				+0.0
17,760	-				+0.2
17,760	-				-1.1
17,760	-				-1.7
17,806	+				-0.7
17,806	+				-1.0
17,806	+				+0.5
17,806	+				-1.4
17,806	+				-0.8
17,806	+				-0.0
17,806	+				-3.0
17,807	-				+1.0
17,807	-				-1.3
17,807	-				-1.9
17,836	+				+0.8
17,836	+				+0.3
17,837	-				+1.0
17,837	-				-0.1
17,837	-				-0.3
17,837	-				-1.0
17,837	-				+0.1
17,889	+		IAI47_00090	0.11	+0.3
17,889	+		IAI47_00090	0.11	-1.1
17,889	+		IAI47_00090	0.11	-0.0
17,890	-		IAI47_00090	0.11	+0.3
17,890	-		IAI47_00090	0.11	-0.8