Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_21865 and IAI47_21870 are separated by 156 nucleotides IAI47_21870 and IAI47_21875 are separated by 216 nucleotides
IAI47_21865: IAI47_21865 - carbohydrate porin, at 124,021 to 125,556
_21865
IAI47_21870: IAI47_21870 - aminoimidazole riboside kinase, at 125,713 to 126,639
_21870
IAI47_21875: IAI47_21875 - ParB/RepB/Spo0J family partition protein, at 126,856 to 127,827
_21875
Position (kb) 125
126
127 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 124.722 kb on + strand, within IAI47_21865 at 124.739 kb on + strand, within IAI47_21865 at 124.739 kb on + strand, within IAI47_21865 at 124.739 kb on + strand, within IAI47_21865 at 124.740 kb on - strand, within IAI47_21865 at 124.740 kb on - strand, within IAI47_21865 at 124.740 kb on - strand, within IAI47_21865 at 124.740 kb on - strand, within IAI47_21865 at 124.752 kb on + strand, within IAI47_21865 at 124.782 kb on + strand, within IAI47_21865 at 124.790 kb on + strand, within IAI47_21865 at 124.791 kb on - strand, within IAI47_21865 at 124.807 kb on - strand, within IAI47_21865 at 124.807 kb on - strand, within IAI47_21865 at 124.835 kb on + strand, within IAI47_21865 at 124.835 kb on + strand, within IAI47_21865 at 124.836 kb on - strand, within IAI47_21865 at 124.836 kb on - strand, within IAI47_21865 at 124.852 kb on - strand, within IAI47_21865 at 124.899 kb on + strand, within IAI47_21865 at 124.900 kb on - strand, within IAI47_21865 at 124.900 kb on - strand, within IAI47_21865 at 124.900 kb on - strand, within IAI47_21865 at 124.932 kb on + strand, within IAI47_21865 at 124.932 kb on + strand, within IAI47_21865 at 124.932 kb on + strand, within IAI47_21865 at 124.933 kb on - strand, within IAI47_21865 at 124.938 kb on + strand, within IAI47_21865 at 124.938 kb on + strand, within IAI47_21865 at 124.939 kb on - strand, within IAI47_21865 at 124.939 kb on - strand, within IAI47_21865 at 124.939 kb on - strand, within IAI47_21865 at 124.939 kb on - strand, within IAI47_21865 at 125.029 kb on - strand, within IAI47_21865 at 125.030 kb on + strand, within IAI47_21865 at 125.030 kb on + strand, within IAI47_21865 at 125.030 kb on + strand, within IAI47_21865 at 125.030 kb on + strand, within IAI47_21865 at 125.030 kb on + strand, within IAI47_21865 at 125.030 kb on + strand, within IAI47_21865 at 125.030 kb on + strand, within IAI47_21865 at 125.030 kb on + strand, within IAI47_21865 at 125.031 kb on - strand, within IAI47_21865 at 125.031 kb on - strand, within IAI47_21865 at 125.031 kb on - strand, within IAI47_21865 at 125.031 kb on - strand, within IAI47_21865 at 125.031 kb on - strand, within IAI47_21865 at 125.031 kb on - strand, within IAI47_21865 at 125.031 kb on - strand, within IAI47_21865 at 125.031 kb on - strand, within IAI47_21865 at 125.073 kb on + strand, within IAI47_21865 at 125.073 kb on + strand, within IAI47_21865 at 125.073 kb on + strand, within IAI47_21865 at 125.074 kb on - strand, within IAI47_21865 at 125.074 kb on - strand, within IAI47_21865 at 125.074 kb on - strand, within IAI47_21865 at 125.074 kb on - strand, within IAI47_21865 at 125.074 kb on - strand, within IAI47_21865 at 125.082 kb on + strand, within IAI47_21865 at 125.082 kb on + strand, within IAI47_21865 at 125.083 kb on - strand, within IAI47_21865 at 125.097 kb on + strand, within IAI47_21865 at 125.097 kb on + strand, within IAI47_21865 at 125.097 kb on + strand, within IAI47_21865 at 125.097 kb on + strand, within IAI47_21865 at 125.097 kb on + strand, within IAI47_21865 at 125.120 kb on + strand, within IAI47_21865 at 125.120 kb on + strand, within IAI47_21865 at 125.120 kb on + strand, within IAI47_21865 at 125.120 kb on + strand, within IAI47_21865 at 125.120 kb on + strand, within IAI47_21865 at 125.120 kb on + strand, within IAI47_21865 at 125.120 kb on + strand, within IAI47_21865 at 125.120 kb on + strand, within IAI47_21865 at 125.120 kb on + strand, within IAI47_21865 at 125.120 kb on + strand, within IAI47_21865 at 125.120 kb on + strand, within IAI47_21865 at 125.120 kb on + strand, within IAI47_21865 at 125.120 kb on + strand, within IAI47_21865 at 125.120 kb on + strand, within IAI47_21865 at 125.120 kb on + strand, within IAI47_21865 at 125.120 kb on + strand, within IAI47_21865 at 125.121 kb on - strand, within IAI47_21865 at 125.121 kb on - strand, within IAI47_21865 at 125.121 kb on - strand, within IAI47_21865 at 125.121 kb on - strand, within IAI47_21865 at 125.121 kb on - strand, within IAI47_21865 at 125.121 kb on - strand, within IAI47_21865 at 125.121 kb on - strand, within IAI47_21865 at 125.121 kb on - strand, within IAI47_21865 at 125.121 kb on - strand, within IAI47_21865 at 125.121 kb on - strand, within IAI47_21865 at 125.121 kb on - strand, within IAI47_21865 at 125.121 kb on - strand, within IAI47_21865 at 125.121 kb on - strand, within IAI47_21865 at 125.121 kb on - strand, within IAI47_21865 at 125.125 kb on - strand, within IAI47_21865 at 125.125 kb on - strand, within IAI47_21865 at 125.125 kb on - strand, within IAI47_21865 at 125.241 kb on - strand, within IAI47_21865 at 125.316 kb on + strand, within IAI47_21865 at 125.316 kb on + strand, within IAI47_21865 at 125.317 kb on - strand, within IAI47_21865 at 125.317 kb on - strand, within IAI47_21865 at 125.317 kb on - strand, within IAI47_21865 at 125.338 kb on + strand, within IAI47_21865 at 125.339 kb on - strand, within IAI47_21865 at 125.339 kb on - strand, within IAI47_21865 at 125.339 kb on - strand, within IAI47_21865 at 125.475 kb on + strand at 125.475 kb on + strand at 125.475 kb on + strand at 125.475 kb on + strand at 125.476 kb on - strand at 125.476 kb on - strand at 125.508 kb on + strand at 125.508 kb on - strand at 125.509 kb on - strand at 125.509 kb on - strand at 125.518 kb on + strand at 125.518 kb on + strand at 125.518 kb on + strand at 125.518 kb on + strand at 125.518 kb on + strand at 125.519 kb on - strand at 125.519 kb on - strand at 125.521 kb on + strand at 125.522 kb on - strand at 125.522 kb on - strand at 125.522 kb on - strand at 125.579 kb on + strand at 125.579 kb on + strand at 125.579 kb on + strand at 125.579 kb on + strand at 125.579 kb on + strand at 125.579 kb on + strand at 125.579 kb on + strand at 125.579 kb on + strand at 125.579 kb on + strand at 125.580 kb on - strand at 125.580 kb on - strand at 125.580 kb on - strand at 125.580 kb on - strand at 125.623 kb on + strand at 125.624 kb on - strand at 125.660 kb on - strand at 125.683 kb on + strand at 125.683 kb on + strand at 125.683 kb on + strand at 125.684 kb on - strand at 125.684 kb on - strand at 125.684 kb on - strand at 125.715 kb on - strand at 125.869 kb on + strand, within IAI47_21870 at 125.870 kb on - strand, within IAI47_21870 at 125.870 kb on - strand, within IAI47_21870 at 125.954 kb on + strand, within IAI47_21870 at 125.993 kb on - strand, within IAI47_21870 at 125.993 kb on - strand, within IAI47_21870 at 125.993 kb on - strand, within IAI47_21870 at 125.993 kb on - strand, within IAI47_21870 at 125.995 kb on + strand, within IAI47_21870 at 125.995 kb on + strand, within IAI47_21870 at 125.996 kb on - strand, within IAI47_21870 at 125.996 kb on - strand, within IAI47_21870 at 126.003 kb on + strand, within IAI47_21870 at 126.099 kb on + strand, within IAI47_21870 at 126.100 kb on - strand, within IAI47_21870 at 126.106 kb on + strand, within IAI47_21870 at 126.106 kb on + strand, within IAI47_21870 at 126.106 kb on + strand, within IAI47_21870 at 126.106 kb on + strand, within IAI47_21870 at 126.106 kb on + strand, within IAI47_21870 at 126.107 kb on - strand, within IAI47_21870 at 126.107 kb on - strand, within IAI47_21870 at 126.220 kb on - strand, within IAI47_21870 at 126.250 kb on + strand, within IAI47_21870 at 126.250 kb on + strand, within IAI47_21870 at 126.342 kb on + strand, within IAI47_21870 at 126.342 kb on + strand, within IAI47_21870 at 126.342 kb on + strand, within IAI47_21870 at 126.342 kb on + strand, within IAI47_21870 at 126.343 kb on - strand, within IAI47_21870 at 126.343 kb on - strand, within IAI47_21870 at 126.343 kb on - strand, within IAI47_21870 at 126.343 kb on - strand, within IAI47_21870 at 126.348 kb on + strand, within IAI47_21870 at 126.349 kb on - strand, within IAI47_21870 at 126.349 kb on - strand, within IAI47_21870 at 126.349 kb on - strand, within IAI47_21870 at 126.349 kb on - strand, within IAI47_21870 at 126.349 kb on - strand, within IAI47_21870 at 126.349 kb on - strand, within IAI47_21870 at 126.349 kb on - strand, within IAI47_21870 at 126.422 kb on + strand, within IAI47_21870 at 126.422 kb on + strand, within IAI47_21870 at 126.422 kb on + strand, within IAI47_21870 at 126.423 kb on - strand, within IAI47_21870 at 126.423 kb on - strand, within IAI47_21870 at 126.423 kb on - strand, within IAI47_21870 at 126.423 kb on - strand, within IAI47_21870 at 126.429 kb on + strand, within IAI47_21870 at 126.429 kb on + strand, within IAI47_21870 at 126.430 kb on - strand, within IAI47_21870 at 126.462 kb on + strand, within IAI47_21870 at 126.463 kb on - strand, within IAI47_21870 at 126.498 kb on + strand, within IAI47_21870 at 126.498 kb on + strand, within IAI47_21870 at 126.543 kb on + strand, within IAI47_21870 at 126.544 kb on - strand, within IAI47_21870 at 126.625 kb on + strand at 126.625 kb on + strand at 126.625 kb on + strand at 126.625 kb on + strand at 126.639 kb on + strand at 126.639 kb on + strand at 126.639 kb on + strand at 126.639 kb on + strand at 126.639 kb on + strand at 126.639 kb on + strand at 126.639 kb on + strand at 126.639 kb on + strand at 126.639 kb on + strand at 126.640 kb on - strand at 126.640 kb on - strand at 126.640 kb on - strand at 126.640 kb on - strand at 126.640 kb on - strand at 126.640 kb on - strand at 126.640 kb on - strand at 126.659 kb on - strand at 126.685 kb on + strand at 126.691 kb on + strand at 126.691 kb on + strand at 126.691 kb on + strand at 126.692 kb on - strand at 126.713 kb on + strand at 126.713 kb on + strand at 126.713 kb on + strand at 126.714 kb on - strand at 126.717 kb on - strand at 126.776 kb on + strand at 126.785 kb on + strand at 126.785 kb on + strand at 126.785 kb on + strand at 126.785 kb on + strand at 126.785 kb on + strand at 126.786 kb on - strand at 126.786 kb on - strand at 126.786 kb on - strand at 126.786 kb on - strand at 126.786 kb on - strand at 126.786 kb on - strand at 126.786 kb on - strand at 126.808 kb on + strand at 126.844 kb on - strand at 126.844 kb on - strand at 126.857 kb on + strand at 126.857 kb on + strand at 126.857 kb on + strand at 126.857 kb on + strand at 126.857 kb on + strand at 126.858 kb on - strand at 126.858 kb on - strand at 126.868 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 124,722 + IAI47_21865 0.46 +0.8 124,739 + IAI47_21865 0.47 -0.0 124,739 + IAI47_21865 0.47 +0.2 124,739 + IAI47_21865 0.47 +1.0 124,740 - IAI47_21865 0.47 -1.0 124,740 - IAI47_21865 0.47 -0.7 124,740 - IAI47_21865 0.47 -0.1 124,740 - IAI47_21865 0.47 -1.3 124,752 + IAI47_21865 0.48 +0.5 124,782 + IAI47_21865 0.50 -0.8 124,790 + IAI47_21865 0.50 +1.5 124,791 - IAI47_21865 0.50 +0.2 124,807 - IAI47_21865 0.51 -1.4 124,807 - IAI47_21865 0.51 +0.9 124,835 + IAI47_21865 0.53 +0.6 124,835 + IAI47_21865 0.53 +0.6 124,836 - IAI47_21865 0.53 +0.0 124,836 - IAI47_21865 0.53 +1.1 124,852 - IAI47_21865 0.54 -1.6 124,899 + IAI47_21865 0.57 -1.8 124,900 - IAI47_21865 0.57 +0.3 124,900 - IAI47_21865 0.57 -1.0 124,900 - IAI47_21865 0.57 -2.4 124,932 + IAI47_21865 0.59 +0.2 124,932 + IAI47_21865 0.59 +1.3 124,932 + IAI47_21865 0.59 +2.1 124,933 - IAI47_21865 0.59 -0.8 124,938 + IAI47_21865 0.60 +0.9 124,938 + IAI47_21865 0.60 +2.1 124,939 - IAI47_21865 0.60 +1.1 124,939 - IAI47_21865 0.60 -0.7 124,939 - IAI47_21865 0.60 -0.1 124,939 - IAI47_21865 0.60 +0.7 125,029 - IAI47_21865 0.66 -0.3 125,030 + IAI47_21865 0.66 +3.1 125,030 + IAI47_21865 0.66 +0.9 125,030 + IAI47_21865 0.66 +1.6 125,030 + IAI47_21865 0.66 -0.7 125,030 + IAI47_21865 0.66 +0.5 125,030 + IAI47_21865 0.66 -1.7 125,030 + IAI47_21865 0.66 +0.5 125,030 + IAI47_21865 0.66 +0.2 125,031 - IAI47_21865 0.66 +0.7 125,031 - IAI47_21865 0.66 +2.9 125,031 - IAI47_21865 0.66 -0.6 125,031 - IAI47_21865 0.66 +2.5 125,031 - IAI47_21865 0.66 +0.1 125,031 - IAI47_21865 0.66 -0.0 125,031 - IAI47_21865 0.66 +1.0 125,031 - IAI47_21865 0.66 -2.0 125,073 + IAI47_21865 0.68 -0.2 125,073 + IAI47_21865 0.68 +1.6 125,073 + IAI47_21865 0.68 +1.0 125,074 - IAI47_21865 0.69 +2.1 125,074 - IAI47_21865 0.69 -1.1 125,074 - IAI47_21865 0.69 +1.7 125,074 - IAI47_21865 0.69 +0.3 125,074 - IAI47_21865 0.69 -0.4 125,082 + IAI47_21865 0.69 +0.9 125,082 + IAI47_21865 0.69 -0.4 125,083 - IAI47_21865 0.69 +0.6 125,097 + IAI47_21865 0.70 +0.3 125,097 + IAI47_21865 0.70 +0.2 125,097 + IAI47_21865 0.70 -1.5 125,097 + IAI47_21865 0.70 +1.0 125,097 + IAI47_21865 0.70 +1.0 125,120 + IAI47_21865 0.72 +0.7 125,120 + IAI47_21865 0.72 -0.8 125,120 + IAI47_21865 0.72 -0.6 125,120 + IAI47_21865 0.72 +0.2 125,120 + IAI47_21865 0.72 -0.3 125,120 + IAI47_21865 0.72 -0.0 125,120 + IAI47_21865 0.72 -0.6 125,120 + IAI47_21865 0.72 -0.7 125,120 + IAI47_21865 0.72 -0.4 125,120 + IAI47_21865 0.72 +1.3 125,120 + IAI47_21865 0.72 +0.4 125,120 + IAI47_21865 0.72 +1.2 125,120 + IAI47_21865 0.72 +1.0 125,120 + IAI47_21865 0.72 +0.3 125,120 + IAI47_21865 0.72 +1.6 125,120 + IAI47_21865 0.72 +1.5 125,121 - IAI47_21865 0.72 +0.4 125,121 - IAI47_21865 0.72 +1.2 125,121 - IAI47_21865 0.72 -1.4 125,121 - IAI47_21865 0.72 +1.4 125,121 - IAI47_21865 0.72 -0.8 125,121 - IAI47_21865 0.72 -0.8 125,121 - IAI47_21865 0.72 +1.4 125,121 - IAI47_21865 0.72 +0.0 125,121 - IAI47_21865 0.72 -0.6 125,121 - IAI47_21865 0.72 -0.7 125,121 - IAI47_21865 0.72 -2.9 125,121 - IAI47_21865 0.72 -1.6 125,121 - IAI47_21865 0.72 -0.6 125,121 - IAI47_21865 0.72 -0.3 125,125 - IAI47_21865 0.72 -0.0 125,125 - IAI47_21865 0.72 +0.7 125,125 - IAI47_21865 0.72 -2.0 125,241 - IAI47_21865 0.79 -0.3 125,316 + IAI47_21865 0.84 +0.3 125,316 + IAI47_21865 0.84 -2.5 125,317 - IAI47_21865 0.84 -0.3 125,317 - IAI47_21865 0.84 +0.4 125,317 - IAI47_21865 0.84 -0.4 125,338 + IAI47_21865 0.86 +1.4 125,339 - IAI47_21865 0.86 +0.3 125,339 - IAI47_21865 0.86 +0.1 125,339 - IAI47_21865 0.86 -0.1 125,475 + -0.2 125,475 + +1.9 125,475 + +1.8 125,475 + -0.7 125,476 - +0.7 125,476 - -1.0 125,508 + -0.3 125,508 - +0.3 125,509 - -1.8 125,509 - +0.8 125,518 + +0.4 125,518 + -0.6 125,518 + +1.1 125,518 + +0.8 125,518 + +0.7 125,519 - -0.7 125,519 - -0.0 125,521 + -0.6 125,522 - -0.7 125,522 - +1.0 125,522 - +2.3 125,579 + +0.8 125,579 + -1.2 125,579 + -0.7 125,579 + +1.8 125,579 + +0.4 125,579 + -0.1 125,579 + +0.3 125,579 + -0.6 125,579 + +0.8 125,580 - -0.0 125,580 - -1.6 125,580 - +1.4 125,580 - +0.9 125,623 + +0.4 125,624 - -0.3 125,660 - +0.7 125,683 + +1.2 125,683 + -0.4 125,683 + +0.7 125,684 - +0.1 125,684 - +0.9 125,684 - -0.4 125,715 - +0.7 125,869 + IAI47_21870 0.17 -0.2 125,870 - IAI47_21870 0.17 +1.2 125,870 - IAI47_21870 0.17 +0.8 125,954 + IAI47_21870 0.26 +1.4 125,993 - IAI47_21870 0.30 +1.1 125,993 - IAI47_21870 0.30 -0.8 125,993 - IAI47_21870 0.30 +1.7 125,993 - IAI47_21870 0.30 +0.5 125,995 + IAI47_21870 0.30 -0.6 125,995 + IAI47_21870 0.30 +2.0 125,996 - IAI47_21870 0.31 +0.3 125,996 - IAI47_21870 0.31 -1.0 126,003 + IAI47_21870 0.31 +1.8 126,099 + IAI47_21870 0.42 +2.2 126,100 - IAI47_21870 0.42 +0.4 126,106 + IAI47_21870 0.42 -1.5 126,106 + IAI47_21870 0.42 +1.6 126,106 + IAI47_21870 0.42 +3.5 126,106 + IAI47_21870 0.42 +0.8 126,106 + IAI47_21870 0.42 +0.7 126,107 - IAI47_21870 0.43 -0.2 126,107 - IAI47_21870 0.43 +0.3 126,220 - IAI47_21870 0.55 +0.3 126,250 + IAI47_21870 0.58 +1.9 126,250 + IAI47_21870 0.58 +0.1 126,342 + IAI47_21870 0.68 -0.3 126,342 + IAI47_21870 0.68 -1.1 126,342 + IAI47_21870 0.68 +0.1 126,342 + IAI47_21870 0.68 -0.4 126,343 - IAI47_21870 0.68 +1.0 126,343 - IAI47_21870 0.68 +0.7 126,343 - IAI47_21870 0.68 -0.4 126,343 - IAI47_21870 0.68 -1.5 126,348 + IAI47_21870 0.69 +1.6 126,349 - IAI47_21870 0.69 +1.3 126,349 - IAI47_21870 0.69 -0.5 126,349 - IAI47_21870 0.69 -1.8 126,349 - IAI47_21870 0.69 +1.5 126,349 - IAI47_21870 0.69 -1.3 126,349 - IAI47_21870 0.69 +0.8 126,349 - IAI47_21870 0.69 +0.3 126,422 + IAI47_21870 0.76 -1.4 126,422 + IAI47_21870 0.76 +0.8 126,422 + IAI47_21870 0.76 -0.7 126,423 - IAI47_21870 0.77 -0.4 126,423 - IAI47_21870 0.77 +0.5 126,423 - IAI47_21870 0.77 -2.7 126,423 - IAI47_21870 0.77 +2.9 126,429 + IAI47_21870 0.77 -0.1 126,429 + IAI47_21870 0.77 +0.6 126,430 - IAI47_21870 0.77 -0.1 126,462 + IAI47_21870 0.81 -0.9 126,463 - IAI47_21870 0.81 +1.5 126,498 + IAI47_21870 0.85 -2.3 126,498 + IAI47_21870 0.85 -2.5 126,543 + IAI47_21870 0.90 +2.2 126,544 - IAI47_21870 0.90 +0.3 126,625 + +0.9 126,625 + -1.3 126,625 + -0.9 126,625 + -0.8 126,639 + +0.1 126,639 + +0.4 126,639 + +1.1 126,639 + -1.6 126,639 + +0.1 126,639 + -0.7 126,639 + +2.4 126,639 + +1.5 126,639 + -1.8 126,640 - +0.4 126,640 - -1.6 126,640 - +0.8 126,640 - -0.1 126,640 - -0.3 126,640 - -0.1 126,640 - -1.8 126,659 - -0.4 126,685 + -0.9 126,691 + -0.1 126,691 + +2.1 126,691 + +0.9 126,692 - +0.3 126,713 + +2.2 126,713 + +1.9 126,713 + +1.2 126,714 - +1.7 126,717 - +1.7 126,776 + +0.7 126,785 + -1.1 126,785 + -1.8 126,785 + -1.0 126,785 + -1.6 126,785 + -0.4 126,786 - -0.1 126,786 - +0.6 126,786 - +0.7 126,786 - +0.2 126,786 - +1.3 126,786 - +0.2 126,786 - +1.0 126,808 + +1.3 126,844 - +0.8 126,844 - -1.3 126,857 + +0.1 126,857 + -0.5 126,857 + -1.6 126,857 + -1.1 126,857 + -1.0 126,858 - +2.8 126,858 - -0.1 126,868 - +1.2
Or see this region's nucleotide sequence