Strain Fitness in Pantoea sp. MT58 around IAI47_17520

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,713,534	-		IAI47_17515	0.29	+1.1
3,713,576	-		IAI47_17515	0.33	+2.0
3,713,679	+		IAI47_17515	0.43	-0.3
3,713,679	+		IAI47_17515	0.43	-0.1
3,713,680	-		IAI47_17515	0.43	-0.3
3,713,707	+		IAI47_17515	0.45	-1.5
3,713,707	+		IAI47_17515	0.45	+0.3
3,713,707	+		IAI47_17515	0.45	-2.2
3,713,707	+		IAI47_17515	0.45	-0.4
3,713,708	-		IAI47_17515	0.45	-0.8
3,713,716	+		IAI47_17515	0.46	-1.7
3,713,717	-		IAI47_17515	0.46	-0.3
3,713,717	-		IAI47_17515	0.46	-1.5
3,713,717	-		IAI47_17515	0.46	+0.2
3,713,737	+		IAI47_17515	0.48	+0.3
3,713,811	+		IAI47_17515	0.55	-0.8
3,713,811	+		IAI47_17515	0.55	-1.4
3,713,811	+		IAI47_17515	0.55	-1.1
3,713,811	+		IAI47_17515	0.55	-1.5
3,713,811	+		IAI47_17515	0.55	-0.1
3,713,811	+		IAI47_17515	0.55	+1.3
3,713,811	+		IAI47_17515	0.55	+2.0
3,713,811	+		IAI47_17515	0.55	-2.0
3,713,811	+		IAI47_17515	0.55	-2.3
3,713,811	+		IAI47_17515	0.55	-0.2
3,713,811	+		IAI47_17515	0.55	-0.2
3,713,812	-		IAI47_17515	0.55	-1.9
3,713,812	-		IAI47_17515	0.55	+0.6
3,713,812	-		IAI47_17515	0.55	+0.2
3,713,812	-		IAI47_17515	0.55	-1.6
3,713,812	-		IAI47_17515	0.55	+1.2
3,713,812	-		IAI47_17515	0.55	-0.8
3,713,924	-		IAI47_17515	0.65	-1.0
3,713,955	+		IAI47_17515	0.68	+0.3
3,713,956	-		IAI47_17515	0.68	+0.5
3,713,956	-		IAI47_17515	0.68	-1.7
3,713,956	-		IAI47_17515	0.68	+0.3
3,714,006	+		IAI47_17515	0.72	+0.7
3,714,006	+		IAI47_17515	0.72	-0.3
3,714,007	-		IAI47_17515	0.73	-0.3
3,714,007	-		IAI47_17515	0.73	+1.4
3,714,051	+		IAI47_17515	0.77	+1.9
3,714,051	+		IAI47_17515	0.77	-0.7
3,714,052	-		IAI47_17515	0.77	+0.8
3,714,052	-		IAI47_17515	0.77	-1.2
3,714,059	-		IAI47_17515	0.77	-0.3
3,714,070	+		IAI47_17515	0.78	+0.5
3,714,071	-		IAI47_17515	0.78	-1.9
3,714,071	-		IAI47_17515	0.78	+0.1
3,714,099	+		IAI47_17515	0.81	-0.6
3,714,099	+		IAI47_17515	0.81	+0.2
3,714,099	+		IAI47_17515	0.81	-0.4
3,714,099	+		IAI47_17515	0.81	+0.4
3,714,099	+		IAI47_17515	0.81	+1.0
3,714,099	+		IAI47_17515	0.81	+1.6
3,714,100	-		IAI47_17515	0.81	-2.3
3,714,100	-		IAI47_17515	0.81	-1.3
3,714,100	-		IAI47_17515	0.81	-0.4
3,714,100	-		IAI47_17515	0.81	-0.1
3,714,100	-		IAI47_17515	0.81	+0.8
3,714,100	-		IAI47_17515	0.81	+0.1
3,714,100	-		IAI47_17515	0.81	-1.5
3,714,100	-		IAI47_17515	0.81	+0.8
3,714,106	+		IAI47_17515	0.82	+1.2
3,714,107	-		IAI47_17515	0.82	-0.3
3,714,123	+		IAI47_17515	0.83	-0.7
3,714,123	+		IAI47_17515	0.83	-0.6
3,714,123	+		IAI47_17515	0.83	+0.2
3,714,124	-		IAI47_17515	0.83	-0.7
3,714,135	+		IAI47_17515	0.84	+1.5
3,714,135	+		IAI47_17515	0.84	-1.1
3,714,135	+		IAI47_17515	0.84	+0.3
3,714,135	+		IAI47_17515	0.84	+1.1
3,714,136	-		IAI47_17515	0.84	+0.4
3,714,136	-		IAI47_17515	0.84	+0.7
3,714,136	-		IAI47_17515	0.84	+0.7
3,714,136	-		IAI47_17515	0.84	+0.3
3,714,136	-		IAI47_17515	0.84	+0.9
3,714,136	-		IAI47_17515	0.84	+1.6
3,714,137	+		IAI47_17515	0.84	+0.3
3,714,137	+		IAI47_17515	0.84	+2.9
3,714,137	+		IAI47_17515	0.84	+0.6
3,714,137	+		IAI47_17515	0.84	-0.8
3,714,260	+				+0.7
3,714,260	+				-0.6
3,714,284	-				-2.1
3,714,307	+				+1.9
3,714,307	+				-0.5
3,714,308	-				+0.8
3,714,308	-				-0.7
3,714,308	-				-1.6
3,714,308	-				+0.6
3,714,308	-				+1.8
3,714,308	-				+0.2
3,714,311	+				+0.7
3,714,312	-				+0.1
3,714,312	-				+0.1
3,714,312	-				+0.3
3,714,312	-				-2.0
3,714,445	+				-0.0
3,714,446	-				+0.6
3,714,446	-				+0.2
3,714,446	-				+1.1
3,714,453	+				-0.7
3,714,455	+				+0.8
3,714,455	+				+1.2
3,714,455	+				+0.5
3,714,455	+				-0.6
3,714,455	+				+0.2
3,714,455	+				-2.0
3,714,455	+				+0.0
3,714,455	+				-0.4
3,714,456	-				-1.3
3,714,456	-				-1.1
3,714,456	-				-0.9
3,714,456	-				-0.6
3,714,456	-				-0.2
3,714,459	+				-3.2
3,714,459	+				+0.4
3,714,459	+				-1.9
3,714,459	+				+0.0
3,714,459	+				-1.7
3,714,460	-				+0.1
3,714,460	-				-1.7
3,714,460	-				+0.3
3,714,460	-				+0.7
3,714,460	-				-0.6
3,714,460	-				+1.0
3,714,460	-				+1.6
3,714,460	-				-1.3
3,714,460	-				-0.1
3,714,498	+				+0.5
3,714,498	+				-0.0
3,714,498	+				+2.9
3,714,499	-				+0.1
3,714,529	+				+1.5
3,714,529	+				-0.5
3,714,556	+				+1.1
3,714,559	+				+0.5
3,714,559	+				+1.2
3,714,559	+				+1.1
3,714,560	-				-0.2
3,714,602	-				+0.7
3,714,602	-				-2.2
3,714,602	-				+0.0
3,714,725	+		IAI47_17520	0.23	+0.4
3,714,725	+		IAI47_17520	0.23	+0.9
3,714,726	-		IAI47_17520	0.23	+1.0
3,714,726	-		IAI47_17520	0.23	+1.0
3,714,830	+		IAI47_17520	0.34	-2.5
3,714,830	+		IAI47_17520	0.34	-0.3
3,714,891	+		IAI47_17520	0.41	-1.5
3,714,892	-		IAI47_17520	0.41	+1.9
3,714,892	-		IAI47_17520	0.41	+0.5
3,714,914	-		IAI47_17520	0.43	-0.6
3,714,934	+		IAI47_17520	0.45	-0.8
3,714,934	+		IAI47_17520	0.45	+3.6
3,714,934	+		IAI47_17520	0.45	+2.4
3,714,935	-		IAI47_17520	0.45	+0.5
3,714,935	-		IAI47_17520	0.45	-0.1
3,714,935	-		IAI47_17520	0.45	-0.4
3,714,935	-		IAI47_17520	0.45	+2.0
3,715,028	+		IAI47_17520	0.55	-0.3
3,715,028	+		IAI47_17520	0.55	-0.4
3,715,028	+		IAI47_17520	0.55	+0.6
3,715,029	-		IAI47_17520	0.55	+1.8
3,715,351	+		IAI47_17520	0.90	-0.6
3,715,351	+		IAI47_17520	0.90	+0.7
3,715,382	+				-2.2
3,715,382	+				-0.5
3,715,382	+				-1.3
3,715,382	+				-1.7
3,715,383	-				-1.9
3,715,383	-				+0.7
3,715,383	-				+0.3
3,715,383	-				-3.2
3,715,383	-				+1.1
3,715,412	-				-1.0
3,715,448	+				-2.4
3,715,448	+				+0.1
3,715,448	+				-0.8
3,715,448	+				+1.6
3,715,448	+				-2.8
3,715,448	+				-0.5
3,715,448	+				+0.3
3,715,449	-				-1.9
3,715,449	-				+0.3
3,715,449	-				-0.9
3,715,449	-				-0.6
3,715,449	-				-2.2
3,715,469	+				+0.2
3,715,469	+				-2.6
3,715,469	+				+1.2
3,715,469	+				-0.3
3,715,469	+				-3.3
3,715,469	+				+1.1
3,715,470	-				+0.2
3,715,470	-				+1.0
3,715,470	-				-2.1
3,715,470	-				+0.1
3,715,470	-				+1.1
3,715,470	-				-1.3
3,715,470	-				+1.7
3,715,470	-				-1.1
3,715,470	-				+0.3
3,715,470	-				-0.7
3,715,470	-				+1.2
3,715,472	-				+1.0
3,715,472	-				+1.7
3,715,478	+				+1.9
3,715,478	+				-0.1
3,715,478	+				+1.0
3,715,479	-				+0.1
3,715,479	-				+0.3
3,715,521	-				+0.6
3,715,527	+				-0.6
3,715,527	+				+0.2
3,715,527	+				-1.1
3,715,528	-				+0.3
3,715,528	-				+1.9
3,715,532	+				+0.1
3,715,532	+				+0.1
3,715,532	+				-0.6
3,715,532	+				-0.1
3,715,532	+				-0.5
3,715,532	+				-0.3
3,715,532	+				-0.2
3,715,532	+				-0.2
3,715,532	+				-1.3
3,715,533	-				+0.6
3,715,533	-				+0.2
3,715,533	-				+1.7
3,715,533	-				+0.5
3,715,533	-				+1.4
3,715,533	-				-0.8
3,715,533	-				+0.9
3,715,533	-				+0.0
3,715,533	-				-1.8
3,715,591	+				-0.7
3,715,592	-				-0.8
3,715,617	-				-0.5
3,715,662	+		IAI47_17525	0.14	-0.3
3,715,663	-		IAI47_17525	0.14	-0.7
3,715,663	-		IAI47_17525	0.14	+2.0
3,715,663	-		IAI47_17525	0.14	-0.3
3,715,663	-		IAI47_17525	0.14	-2.9
3,715,731	+		IAI47_17525	0.20	-1.0
3,715,795	+		IAI47_17525	0.26	-2.2
3,715,795	+		IAI47_17525	0.26	-0.9
3,715,795	+		IAI47_17525	0.26	+1.2
3,715,796	-		IAI47_17525	0.27	-1.1
3,715,796	-		IAI47_17525	0.27	+2.2
3,715,796	-		IAI47_17525	0.27	-1.1
3,715,796	-		IAI47_17525	0.27	-0.6
3,715,796	-		IAI47_17525	0.27	-0.9
3,715,821	+		IAI47_17525	0.29	-0.9
3,715,821	+		IAI47_17525	0.29	-0.1
3,715,821	+		IAI47_17525	0.29	+1.3
3,715,821	+		IAI47_17525	0.29	-0.3
3,715,822	-		IAI47_17525	0.29	+1.0
3,715,822	-		IAI47_17525	0.29	+1.3
3,715,822	-		IAI47_17525	0.29	+0.3
3,715,822	-		IAI47_17525	0.29	-0.7
3,715,822	-		IAI47_17525	0.29	+2.0
3,715,902	+		IAI47_17525	0.36	-0.2
3,715,902	+		IAI47_17525	0.36	+0.5
3,715,902	+		IAI47_17525	0.36	-0.7
3,715,902	+		IAI47_17525	0.36	+0.7
3,715,902	+		IAI47_17525	0.36	-0.1
3,715,902	+		IAI47_17525	0.36	-0.9
3,715,902	+		IAI47_17525	0.36	-1.3
3,715,903	-		IAI47_17525	0.37	-1.3
3,715,903	-		IAI47_17525	0.37	-0.4
3,715,903	-		IAI47_17525	0.37	-1.4
3,715,903	-		IAI47_17525	0.37	-0.7
3,715,903	-		IAI47_17525	0.37	+0.2
3,715,903	-		IAI47_17525	0.37	+0.9
3,715,903	-		IAI47_17525	0.37	-1.5
3,715,903	-		IAI47_17525	0.37	-0.9
3,715,903	-		IAI47_17525	0.37	-0.0
3,715,903	-		IAI47_17525	0.37	-2.7
3,715,903	-		IAI47_17525	0.37	-2.1
3,715,903	-		IAI47_17525	0.37	-0.2
3,715,932	+		IAI47_17525	0.39	-1.8
3,715,932	+		IAI47_17525	0.39	-0.5
3,715,933	-		IAI47_17525	0.39	+0.1
3,715,933	-		IAI47_17525	0.39	-1.7
3,715,933	-		IAI47_17525	0.39	-0.5
3,716,037	+		IAI47_17525	0.49	-2.4
3,716,038	-		IAI47_17525	0.49	-0.9
3,716,102	+		IAI47_17525	0.55	-1.8
3,716,115	+		IAI47_17525	0.56	-0.1
3,716,116	-		IAI47_17525	0.56	+0.7
3,716,116	-		IAI47_17525	0.56	+1.3
3,716,175	+		IAI47_17525	0.62	+1.3
3,716,175	+		IAI47_17525	0.62	-1.2
3,716,175	+		IAI47_17525	0.62	+0.3
3,716,175	+		IAI47_17525	0.62	+0.1
3,716,175	+		IAI47_17525	0.62	+0.5
3,716,175	+		IAI47_17525	0.62	+1.7
3,716,176	-		IAI47_17525	0.62	-0.9
3,716,176	-		IAI47_17525	0.62	+0.3
3,716,176	-		IAI47_17525	0.62	+1.0
3,716,176	-		IAI47_17525	0.62	-1.3
3,716,176	-		IAI47_17525	0.62	-0.1
3,716,176	-		IAI47_17525	0.62	-1.5
3,716,176	-		IAI47_17525	0.62	+0.4
3,716,176	-		IAI47_17525	0.62	-1.9
3,716,176	-		IAI47_17525	0.62	-0.2
3,716,180	+		IAI47_17525	0.62	-2.3
3,716,180	+		IAI47_17525	0.62	+2.0
3,716,180	+		IAI47_17525	0.62	-1.5
3,716,180	+		IAI47_17525	0.62	+0.1
3,716,180	+		IAI47_17525	0.62	+1.4
3,716,181	-		IAI47_17525	0.62	+0.2
3,716,181	-		IAI47_17525	0.62	+0.7
3,716,181	-		IAI47_17525	0.62	-2.2
3,716,181	-		IAI47_17525	0.62	-0.5
3,716,181	-		IAI47_17525	0.62	+0.7
3,716,181	-		IAI47_17525	0.62	-0.3
3,716,186	+		IAI47_17525	0.63	+1.1
3,716,186	+		IAI47_17525	0.63	-0.1
3,716,187	-		IAI47_17525	0.63	-0.2
3,716,187	-		IAI47_17525	0.63	+1.1
3,716,230	+		IAI47_17525	0.67	-1.5
3,716,230	+		IAI47_17525	0.67	+0.1
3,716,230	+		IAI47_17525	0.67	-2.1
3,716,230	+		IAI47_17525	0.67	+0.6
3,716,230	+		IAI47_17525	0.67	-0.4
3,716,230	+		IAI47_17525	0.67	+0.3
3,716,230	+		IAI47_17525	0.67	-2.9
3,716,231	-		IAI47_17525	0.67	-0.3
3,716,231	-		IAI47_17525	0.67	-0.1
3,716,231	-		IAI47_17525	0.67	-1.5
3,716,231	-		IAI47_17525	0.67	+1.2
3,716,231	-		IAI47_17525	0.67	-1.5
3,716,258	+		IAI47_17525	0.70	+1.7
3,716,318	+		IAI47_17525	0.75	+0.2
3,716,318	+		IAI47_17525	0.75	+1.0
3,716,318	+		IAI47_17525	0.75	+0.2
3,716,318	+		IAI47_17525	0.75	-1.3
3,716,318	+		IAI47_17525	0.75	+2.4
3,716,319	-		IAI47_17525	0.75	-1.8
3,716,319	-		IAI47_17525	0.75	+0.9
3,716,321	+		IAI47_17525	0.76	+1.1
3,716,321	+		IAI47_17525	0.76	-0.9
3,716,322	-		IAI47_17525	0.76	+0.7
3,716,322	-		IAI47_17525	0.76	-0.5
3,716,405	+		IAI47_17525	0.83	-0.8
3,716,406	-		IAI47_17525	0.83	+0.4