Strain Fitness in Pantoea sp. MT58 around IAI47_16710

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,534,312	-		IAI47_16705	0.46	+0.4
3,534,380	+		IAI47_16705	0.50	-0.9
3,534,380	+		IAI47_16705	0.50	-0.6
3,534,380	+		IAI47_16705	0.50	-0.3
3,534,380	+		IAI47_16705	0.50	+2.2
3,534,380	+		IAI47_16705	0.50	-0.1
3,534,380	+		IAI47_16705	0.50	-0.9
3,534,380	+		IAI47_16705	0.50	-0.5
3,534,381	-		IAI47_16705	0.50	+2.3
3,534,381	-		IAI47_16705	0.50	+0.8
3,534,406	-		IAI47_16705	0.52	-1.0
3,534,406	-		IAI47_16705	0.52	+0.7
3,534,406	-		IAI47_16705	0.52	-1.1
3,534,406	-		IAI47_16705	0.52	+0.9
3,534,449	+		IAI47_16705	0.54	-0.4
3,534,449	+		IAI47_16705	0.54	+0.0
3,534,449	+		IAI47_16705	0.54	-1.4
3,534,450	-		IAI47_16705	0.54	+0.5
3,534,450	-		IAI47_16705	0.54	+0.6
3,534,512	+		IAI47_16705	0.58	-0.6
3,534,512	+		IAI47_16705	0.58	+2.0
3,534,527	+		IAI47_16705	0.59	-0.9
3,534,527	+		IAI47_16705	0.59	+2.2
3,534,528	-		IAI47_16705	0.59	+0.4
3,534,531	+		IAI47_16705	0.59	+0.1
3,534,531	+		IAI47_16705	0.59	+0.5
3,534,531	+		IAI47_16705	0.59	+0.6
3,534,531	+		IAI47_16705	0.59	-0.3
3,534,531	+		IAI47_16705	0.59	-1.8
3,534,531	+		IAI47_16705	0.59	-0.4
3,534,531	+		IAI47_16705	0.59	-2.3
3,534,532	-		IAI47_16705	0.59	+2.2
3,534,532	-		IAI47_16705	0.59	-0.1
3,534,532	-		IAI47_16705	0.59	-0.1
3,534,532	-		IAI47_16705	0.59	-0.2
3,534,540	-		IAI47_16705	0.59	-2.0
3,534,540	-		IAI47_16705	0.59	-2.6
3,534,540	-		IAI47_16705	0.59	-2.4
3,534,548	+		IAI47_16705	0.60	+0.2
3,534,548	+		IAI47_16705	0.60	+0.1
3,534,548	+		IAI47_16705	0.60	+0.4
3,534,548	+		IAI47_16705	0.60	-1.2
3,534,549	-		IAI47_16705	0.60	-2.1
3,534,549	-		IAI47_16705	0.60	-0.6
3,534,661	+		IAI47_16705	0.66	+1.0
3,534,661	+		IAI47_16705	0.66	-1.1
3,534,661	+		IAI47_16705	0.66	-0.6
3,534,661	+		IAI47_16705	0.66	+0.9
3,534,661	+		IAI47_16705	0.66	+0.8
3,534,661	+		IAI47_16705	0.66	-1.7
3,534,661	+		IAI47_16705	0.66	+0.6
3,534,662	-		IAI47_16705	0.66	-0.6
3,534,662	-		IAI47_16705	0.66	+0.5
3,534,662	-		IAI47_16705	0.66	-1.1
3,534,662	-		IAI47_16705	0.66	+0.6
3,534,662	-		IAI47_16705	0.66	-0.6
3,534,662	-		IAI47_16705	0.66	-2.4
3,534,662	-		IAI47_16705	0.66	+0.5
3,534,662	-		IAI47_16705	0.66	+0.6
3,534,800	+		IAI47_16705	0.74	-0.5
3,534,800	+		IAI47_16705	0.74	-0.6
3,534,801	-		IAI47_16705	0.74	+0.6
3,534,803	+		IAI47_16705	0.74	-1.9
3,534,803	+		IAI47_16705	0.74	+0.4
3,534,804	-		IAI47_16705	0.74	+0.9
3,534,804	-		IAI47_16705	0.74	-2.9
3,534,806	+		IAI47_16705	0.74	-1.5
3,534,806	+		IAI47_16705	0.74	-1.8
3,534,806	+		IAI47_16705	0.74	-0.2
3,534,806	+		IAI47_16705	0.74	-1.6
3,534,806	+		IAI47_16705	0.74	-1.4
3,534,806	+		IAI47_16705	0.74	-0.9
3,534,807	-		IAI47_16705	0.74	+0.5
3,534,807	-		IAI47_16705	0.74	+0.4
3,534,807	-		IAI47_16705	0.74	-2.2
3,534,807	-		IAI47_16705	0.74	+0.5
3,534,807	-		IAI47_16705	0.74	-0.2
3,534,807	-		IAI47_16705	0.74	+0.6
3,534,852	+		IAI47_16705	0.77	+1.3
3,534,852	+		IAI47_16705	0.77	-0.6
3,534,852	+		IAI47_16705	0.77	+0.2
3,534,852	+		IAI47_16705	0.77	+1.2
3,534,852	+		IAI47_16705	0.77	-0.4
3,534,852	+		IAI47_16705	0.77	-1.4
3,534,853	-		IAI47_16705	0.77	+0.3
3,534,876	+		IAI47_16705	0.78	-0.2
3,534,877	-		IAI47_16705	0.78	+0.2
3,534,878	+		IAI47_16705	0.78	+0.6
3,534,878	+		IAI47_16705	0.78	-1.6
3,534,878	+		IAI47_16705	0.78	+0.4
3,534,878	+		IAI47_16705	0.78	-2.0
3,534,878	+		IAI47_16705	0.78	+0.2
3,534,878	+		IAI47_16705	0.78	+1.6
3,534,878	+		IAI47_16705	0.78	+0.4
3,534,878	+		IAI47_16705	0.78	-0.5
3,534,878	+		IAI47_16705	0.78	+0.6
3,534,879	-		IAI47_16705	0.78	+0.7
3,534,879	-		IAI47_16705	0.78	+1.1
3,534,879	-		IAI47_16705	0.78	+0.7
3,534,879	-		IAI47_16705	0.78	+0.0
3,534,893	+		IAI47_16705	0.79	+0.8
3,534,893	+		IAI47_16705	0.79	+1.0
3,534,893	+		IAI47_16705	0.79	+0.6
3,534,893	+		IAI47_16705	0.79	-0.3
3,534,893	+		IAI47_16705	0.79	+0.4
3,534,893	+		IAI47_16705	0.79	-2.6
3,534,893	+		IAI47_16705	0.79	+3.5
3,534,893	+		IAI47_16705	0.79	-2.0
3,534,893	+		IAI47_16705	0.79	+1.3
3,534,893	+		IAI47_16705	0.79	+0.7
3,534,893	+		IAI47_16705	0.79	-1.9
3,534,894	-		IAI47_16705	0.79	+1.1
3,534,894	-		IAI47_16705	0.79	-1.6
3,534,894	-		IAI47_16705	0.79	-2.0
3,534,894	-		IAI47_16705	0.79	+0.1
3,534,894	-		IAI47_16705	0.79	-1.1
3,534,894	-		IAI47_16705	0.79	+0.4
3,534,894	-		IAI47_16705	0.79	+2.0
3,534,894	-		IAI47_16705	0.79	+2.3
3,534,894	-		IAI47_16705	0.79	+1.0
3,534,894	-		IAI47_16705	0.79	+0.6
3,534,894	-		IAI47_16705	0.79	-0.5
3,534,894	-		IAI47_16705	0.79	-1.1
3,534,934	+		IAI47_16705	0.82	-2.2
3,534,935	-		IAI47_16705	0.82	-2.4
3,534,964	+		IAI47_16705	0.83	+0.9
3,534,964	+		IAI47_16705	0.83	+0.9
3,534,964	+		IAI47_16705	0.83	-2.9
3,534,964	+		IAI47_16705	0.83	+0.0
3,534,965	-		IAI47_16705	0.83	-0.2
3,534,965	-		IAI47_16705	0.83	-1.3
3,534,965	-		IAI47_16705	0.83	+0.2
3,534,996	+		IAI47_16705	0.85	-0.6
3,535,028	+		IAI47_16705	0.87	+1.1
3,535,028	+		IAI47_16705	0.87	+0.8
3,535,028	+		IAI47_16705	0.87	-2.8
3,535,028	+		IAI47_16705	0.87	-1.3
3,535,029	-		IAI47_16705	0.87	-0.1
3,535,029	-		IAI47_16705	0.87	+1.2
3,535,029	-		IAI47_16705	0.87	+0.7
3,535,029	-		IAI47_16705	0.87	-1.1
3,535,029	-		IAI47_16705	0.87	+0.4
3,535,033	+		IAI47_16705	0.87	-0.5
3,535,034	-		IAI47_16705	0.87	-1.0
3,535,085	+				-0.7
3,535,085	+				+3.6
3,535,086	-				+0.1
3,535,086	-				-2.2
3,535,086	-				-0.8
3,535,086	-				+0.4
3,535,086	-				-0.2
3,535,086	-				+1.0
3,535,091	+				-0.7
3,535,091	+				-2.2
3,535,091	+				+0.9
3,535,091	+				+0.5
3,535,091	+				+0.1
3,535,092	-				+1.3
3,535,092	-				-1.3
3,535,113	-				+1.0
3,535,127	+				-0.6
3,535,128	-				+2.6
3,535,245	+				+0.4
3,535,245	+				-0.6
3,535,246	-				-1.3
3,535,246	-				-0.1
3,535,249	-				+2.8
3,535,263	+				+1.0
3,535,263	+				-1.9
3,535,264	-				-1.5
3,535,264	-				-0.5
3,535,264	-				+0.5
3,535,264	-				+1.0
3,535,264	-				+0.2
3,535,278	+				+0.5
3,535,278	+				+1.2
3,535,279	-				-1.0
3,535,279	-				-0.3
3,535,422	+		IAI47_16710	0.17	-0.7
3,535,422	+		IAI47_16710	0.17	+0.3
3,535,423	-		IAI47_16710	0.17	+4.1
3,535,423	-		IAI47_16710	0.17	+0.2
3,535,426	-		IAI47_16710	0.18	-0.2
3,535,426	-		IAI47_16710	0.18	+1.8
3,535,426	-		IAI47_16710	0.18	+1.7
3,535,433	+		IAI47_16710	0.19	-0.3
3,535,433	+		IAI47_16710	0.19	-1.2
3,535,433	+		IAI47_16710	0.19	-1.7
3,535,434	-		IAI47_16710	0.19	+1.0
3,535,451	+		IAI47_16710	0.21	+2.5
3,535,451	+		IAI47_16710	0.21	+3.2
3,535,452	-		IAI47_16710	0.21	+0.4
3,535,464	+		IAI47_16710	0.23	+0.1
3,535,464	+		IAI47_16710	0.23	+1.5
3,535,464	+		IAI47_16710	0.23	+1.4
3,535,465	-		IAI47_16710	0.23	+0.9
3,535,465	-		IAI47_16710	0.23	-0.7
3,535,501	-		IAI47_16710	0.28	+0.4
3,535,626	+		IAI47_16710	0.45	+0.8
3,535,627	-		IAI47_16710	0.45	-0.4
3,535,649	+		IAI47_16710	0.48	-1.4
3,535,649	+		IAI47_16710	0.48	+1.9
3,535,649	+		IAI47_16710	0.48	-1.3
3,535,649	+		IAI47_16710	0.48	+0.6
3,535,649	+		IAI47_16710	0.48	+4.6
3,535,649	+		IAI47_16710	0.48	+0.4
3,535,649	+		IAI47_16710	0.48	-2.1
3,535,649	+		IAI47_16710	0.48	+1.7
3,535,649	+		IAI47_16710	0.48	-2.0
3,535,649	+		IAI47_16710	0.48	+1.2
3,535,649	+		IAI47_16710	0.48	-1.6
3,535,649	+		IAI47_16710	0.48	-2.0
3,535,650	-		IAI47_16710	0.48	+1.5
3,535,650	-		IAI47_16710	0.48	-1.4
3,535,680	-		IAI47_16710	0.53	-1.3
3,535,707	+		IAI47_16710	0.56	+0.2
3,535,707	+		IAI47_16710	0.56	+4.1
3,535,707	+		IAI47_16710	0.56	+2.6
3,535,707	+		IAI47_16710	0.56	-1.2
3,535,707	+		IAI47_16710	0.56	+0.7
3,535,707	+		IAI47_16710	0.56	+0.2
3,535,707	+		IAI47_16710	0.56	+1.8
3,535,707	+		IAI47_16710	0.56	+1.9
3,535,708	-		IAI47_16710	0.56	+0.0
3,535,708	-		IAI47_16710	0.56	+0.5
3,535,708	-		IAI47_16710	0.56	-0.4
3,535,708	-		IAI47_16710	0.56	+0.3
3,535,708	-		IAI47_16710	0.56	-1.2
3,535,724	+		IAI47_16710	0.59	-1.2
3,535,724	+		IAI47_16710	0.59	-1.6
3,535,767	+		IAI47_16710	0.64	-0.7
3,535,889	+		IAI47_16710	0.81	+1.6
3,535,889	+		IAI47_16710	0.81	-1.6
3,535,890	-		IAI47_16710	0.81	-1.9
3,535,897	+		IAI47_16710	0.82	+0.2
3,535,960	+				+0.9
3,535,960	+				+0.3
3,535,996	-				+1.5
3,536,047	+				-0.2
3,536,047	+				+0.3
3,536,047	+				-1.9
3,536,047	+				+0.2
3,536,047	+				+2.8
3,536,048	-				+0.8
3,536,048	-				-0.5
3,536,048	-				+0.1
3,536,052	-				-0.4
3,536,059	+				-1.6
3,536,068	-				+0.4
3,536,087	+				-0.6
3,536,088	-				-0.5
3,536,113	+				-1.2
3,536,113	+				-1.6
3,536,113	+				-0.0
3,536,114	-				-1.9
3,536,114	-				-0.3
3,536,114	-				-1.0
3,536,114	-				-0.2
3,536,163	+				+0.7
3,536,187	+				+1.4
3,536,194	+				-0.5
3,536,197	+				-1.1
3,536,198	-				+0.5
3,536,198	-				-0.3
3,536,198	-				+1.6
3,536,208	+				+3.2
3,536,209	-				+0.1
3,536,209	-				+0.2
3,536,217	+				-2.2
3,536,219	+				-0.2
3,536,220	-				-1.4
3,536,220	-				+0.5
3,536,220	-				+0.7
3,536,220	-				-0.8
3,536,220	-				+0.7
3,536,223	+				-0.9
3,536,223	+				-0.1
3,536,224	-				+0.6
3,536,224	-				+0.5
3,536,224	-				-0.2
3,536,248	-				-1.5
3,536,271	+				+1.4
3,536,303	+				+0.3
3,536,304	-				+1.0
3,536,312	+				+1.8
3,536,332	+				-1.4
3,536,333	-				-0.9
3,536,342	+				+0.5
3,536,342	+				+0.8
3,536,343	-				+0.6
3,536,354	-				-0.2
3,536,386	+				-0.1
3,536,387	-				-1.0
3,536,387	-				+1.5
3,536,387	-				-1.1
3,536,423	-				+2.2
3,536,443	+				+0.7
3,536,461	+				-1.2
3,536,467	+				+1.4
3,536,468	-				+1.0
3,536,473	+				-2.3
3,536,473	+				+2.2
3,536,473	+				+0.2
3,536,473	+				-0.8
3,536,473	+				-1.6
3,536,473	+				-0.8
3,536,474	-				+0.9
3,536,474	-				+0.6
3,536,474	-				-0.8
3,536,474	-				+0.1
3,536,474	-				+1.0
3,536,475	+				+0.2
3,536,475	+				+0.2
3,536,475	+				-0.2
3,536,475	+				-0.8
3,536,476	-				+1.2
3,536,476	-				-2.1
3,536,476	-				+0.5
3,536,485	-				+1.0
3,536,485	-				-0.2
3,536,523	+				-1.6
3,536,524	-				-1.5
3,536,529	+				-0.2
3,536,529	+				-2.1
3,536,529	+				-1.0
3,536,529	+				+0.5
3,536,529	+				-0.1
3,536,541	-				+1.1
3,536,560	+				-0.4
3,536,560	+				-0.8
3,536,560	+				-0.5
3,536,576	-				+0.0
3,536,588	+				+0.6
3,536,589	-				-2.8
3,536,589	-				-1.1
3,536,593	+				-2.3
3,536,593	+				+2.5
3,536,593	+				+0.2
3,536,593	+				-2.1
3,536,594	-				-0.7
3,536,594	-				+0.5
3,536,626	+				-0.8
3,536,627	-				+0.9
3,536,643	+				-1.3
3,536,665	+				-2.3
3,536,679	+				+2.8
3,536,680	-				-1.0
3,536,684	+				-1.1
3,536,684	+				-0.4
3,536,684	+				-0.1
3,536,685	-				+0.7
3,536,706	+				+1.6
3,536,741	+				-0.9
3,536,861	+				-0.3
3,536,862	-				-1.0
3,536,862	-				-3.0
3,536,862	-				-0.3
3,536,864	+				-1.1
3,536,864	+				-2.4
3,536,865	-				-0.4
3,536,879	+		IAI47_16715	0.10	-0.0
3,536,879	+		IAI47_16715	0.10	+0.4
3,536,879	+		IAI47_16715	0.10	-0.4
3,536,880	-		IAI47_16715	0.10	-0.9
3,536,880	-		IAI47_16715	0.10	+0.5
3,536,880	-		IAI47_16715	0.10	-0.8
3,536,880	-		IAI47_16715	0.10	-0.6
3,536,880	-		IAI47_16715	0.10	-0.7
3,536,883	+		IAI47_16715	0.11	+2.1
3,536,883	+		IAI47_16715	0.11	-0.8
3,536,883	+		IAI47_16715	0.11	+0.6
3,536,884	-		IAI47_16715	0.11	+0.1
3,536,884	-		IAI47_16715	0.11	+0.9
3,536,884	-		IAI47_16715	0.11	+0.3