Strain Fitness in Pantoea sp. MT58 around IAI47_16700

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,531,395	-		IAI47_16690	0.84	+0.1
3,531,417	-		IAI47_16690	0.87	+0.0
3,531,494	+				+0.2
3,531,494	+				-1.9
3,531,495	-				+3.0
3,531,495	-				-0.4
3,531,495	-				-0.7
3,531,495	-				+0.7
3,531,495	-				-0.7
3,531,495	-				+1.7
3,531,526	+				-1.8
3,531,527	-				+0.8
3,531,527	-				-0.8
3,531,527	-				+0.1
3,531,613	+		IAI47_16695	0.15	+0.1
3,531,614	-		IAI47_16695	0.15	-0.6
3,531,614	-		IAI47_16695	0.15	+0.6
3,531,620	+		IAI47_16695	0.16	-1.8
3,531,620	+		IAI47_16695	0.16	+0.2
3,531,620	+		IAI47_16695	0.16	+0.5
3,531,621	-		IAI47_16695	0.16	+1.5
3,531,621	-		IAI47_16695	0.16	+1.3
3,531,659	+		IAI47_16695	0.22	+0.5
3,531,660	-		IAI47_16695	0.22	-1.1
3,531,689	+		IAI47_16695	0.26	-0.2
3,531,689	+		IAI47_16695	0.26	-0.7
3,531,690	-		IAI47_16695	0.27	-0.5
3,531,712	+		IAI47_16695	0.30	-0.2
3,531,712	+		IAI47_16695	0.30	+1.1
3,531,712	+		IAI47_16695	0.30	-0.7
3,531,712	+		IAI47_16695	0.30	-0.8
3,531,712	+		IAI47_16695	0.30	-0.0
3,531,712	+		IAI47_16695	0.30	-3.1
3,531,713	-		IAI47_16695	0.30	-0.1
3,531,713	-		IAI47_16695	0.30	-0.5
3,531,713	-		IAI47_16695	0.30	+0.7
3,531,713	-		IAI47_16695	0.30	-1.0
3,531,713	-		IAI47_16695	0.30	+0.4
3,531,713	-		IAI47_16695	0.30	+0.6
3,531,713	-		IAI47_16695	0.30	-1.1
3,531,713	-		IAI47_16695	0.30	-0.1
3,531,713	-		IAI47_16695	0.30	-0.7
3,531,713	-		IAI47_16695	0.30	+0.3
3,531,743	-		IAI47_16695	0.35	-0.9
3,531,743	-		IAI47_16695	0.35	+1.2
3,531,743	-		IAI47_16695	0.35	+1.5
3,531,743	-		IAI47_16695	0.35	-1.9
3,531,895	+		IAI47_16695	0.57	+0.6
3,531,895	+		IAI47_16695	0.57	-0.2
3,531,895	+		IAI47_16695	0.57	+0.6
3,531,895	+		IAI47_16695	0.57	-0.3
3,531,896	-		IAI47_16695	0.57	+0.6
3,531,896	-		IAI47_16695	0.57	+0.3
3,531,982	+		IAI47_16695	0.70	-1.2
3,531,982	+		IAI47_16695	0.70	+0.6
3,532,225	+				+0.9
3,532,225	+				+0.8
3,532,226	-				-1.3
3,532,226	-				+0.7
3,532,226	-				-0.3
3,532,238	+				-1.5
3,532,238	+				+0.2
3,532,238	+				-0.2
3,532,238	+				-2.1
3,532,238	+				+1.6
3,532,238	+				-0.1
3,532,238	+				-0.9
3,532,239	-				+0.1
3,532,239	-				+0.4
3,532,239	-				+0.9
3,532,239	-				+0.2
3,532,239	-				+0.8
3,532,242	+				-1.8
3,532,242	+				-1.2
3,532,242	+				-1.6
3,532,243	-				+1.2
3,532,262	+				+0.5
3,532,301	+				+1.2
3,532,367	+		IAI47_16700	0.11	-1.0
3,532,367	+		IAI47_16700	0.11	-1.4
3,532,367	+		IAI47_16700	0.11	+0.3
3,532,367	+		IAI47_16700	0.11	-2.6
3,532,367	+		IAI47_16700	0.11	-0.4
3,532,368	-		IAI47_16700	0.11	-2.0
3,532,368	-		IAI47_16700	0.11	-0.1
3,532,368	-		IAI47_16700	0.11	+0.6
3,532,368	-		IAI47_16700	0.11	-0.7
3,532,385	+		IAI47_16700	0.13	-0.5
3,532,386	-		IAI47_16700	0.13	-0.4
3,532,386	-		IAI47_16700	0.13	-0.4
3,532,386	-		IAI47_16700	0.13	-1.0
3,532,415	+		IAI47_16700	0.15	+0.3
3,532,415	+		IAI47_16700	0.15	+1.9
3,532,415	+		IAI47_16700	0.15	+0.3
3,532,415	+		IAI47_16700	0.15	+0.2
3,532,415	+		IAI47_16700	0.15	+0.8
3,532,416	-		IAI47_16700	0.15	-1.2
3,532,416	-		IAI47_16700	0.15	+1.5
3,532,524	-		IAI47_16700	0.24	-0.4
3,532,524	-		IAI47_16700	0.24	+1.0
3,532,532	-		IAI47_16700	0.24	-0.6
3,532,733	+		IAI47_16700	0.40	-0.9
3,532,756	+		IAI47_16700	0.42	+1.6
3,532,756	+		IAI47_16700	0.42	+1.4
3,532,757	-		IAI47_16700	0.42	-0.7
3,532,757	-		IAI47_16700	0.42	+1.7
3,532,844	+		IAI47_16700	0.49	-0.2
3,532,844	+		IAI47_16700	0.49	-0.2
3,532,844	+		IAI47_16700	0.49	-0.8
3,532,845	-		IAI47_16700	0.49	+1.8
3,532,845	-		IAI47_16700	0.49	-0.8
3,532,845	-		IAI47_16700	0.49	-0.2
3,532,845	-		IAI47_16700	0.49	+3.5
3,532,896	-		IAI47_16700	0.53	+1.1
3,532,933	+		IAI47_16700	0.56	+0.2
3,532,933	+		IAI47_16700	0.56	+0.5
3,532,933	+		IAI47_16700	0.56	+0.0
3,532,933	+		IAI47_16700	0.56	-0.5
3,532,933	+		IAI47_16700	0.56	-0.2
3,532,933	+		IAI47_16700	0.56	-0.6
3,532,934	-		IAI47_16700	0.56	+0.9
3,532,934	-		IAI47_16700	0.56	+1.1
3,532,934	-		IAI47_16700	0.56	+1.8
3,532,934	-		IAI47_16700	0.56	-0.0
3,532,934	-		IAI47_16700	0.56	-1.3
3,532,934	-		IAI47_16700	0.56	+1.4
3,532,934	-		IAI47_16700	0.56	+0.0
3,532,934	-		IAI47_16700	0.56	-0.3
3,532,934	-		IAI47_16700	0.56	+0.9
3,532,985	+		IAI47_16700	0.60	+0.6
3,532,986	-		IAI47_16700	0.60	+1.0
3,533,098	+		IAI47_16700	0.69	-0.4
3,533,098	+		IAI47_16700	0.69	+1.0
3,533,098	+		IAI47_16700	0.69	-1.6
3,533,099	-		IAI47_16700	0.69	-0.3
3,533,099	-		IAI47_16700	0.69	+0.7
3,533,099	-		IAI47_16700	0.69	-0.2
3,533,099	-		IAI47_16700	0.69	+0.5
3,533,099	-		IAI47_16700	0.69	-2.2
3,533,104	+		IAI47_16700	0.70	+0.5
3,533,140	+		IAI47_16700	0.73	+1.3
3,533,141	-		IAI47_16700	0.73	+0.7
3,533,141	-		IAI47_16700	0.73	+1.1
3,533,185	-		IAI47_16700	0.76	-0.2
3,533,227	+		IAI47_16700	0.79	-0.9
3,533,227	+		IAI47_16700	0.79	+0.5
3,533,227	+		IAI47_16700	0.79	+0.3
3,533,227	+		IAI47_16700	0.79	+0.5
3,533,227	+		IAI47_16700	0.79	-0.8
3,533,227	+		IAI47_16700	0.79	-0.1
3,533,227	+		IAI47_16700	0.79	+1.0
3,533,228	-		IAI47_16700	0.79	-2.4
3,533,228	-		IAI47_16700	0.79	+0.6
3,533,228	-		IAI47_16700	0.79	-0.1
3,533,228	-		IAI47_16700	0.79	-1.2
3,533,314	+		IAI47_16700	0.86	+0.3
3,533,371	+				-0.9
3,533,371	+				-0.2
3,533,371	+				+2.4
3,533,372	-				+2.6
3,533,372	-				+1.4
3,533,372	-				+0.8
3,533,372	-				-2.5
3,533,384	+				-1.0
3,533,385	-				-0.7
3,533,385	-				+1.4
3,533,385	-				+0.9
3,533,385	-				+1.8
3,533,385	-				-0.8
3,533,460	-				+1.9
3,533,481	-				-1.9
3,533,481	-				-1.0
3,533,481	-				-1.3
3,533,492	+				-0.1
3,533,492	+				-1.9
3,533,492	+				+1.1
3,533,493	-				+0.0
3,533,493	-				+0.6
3,533,493	-				+1.8
3,533,493	-				+2.2
3,533,500	+				-0.7
3,533,501	-				-0.2
3,533,526	-				-2.5
3,533,526	-				+2.5
3,533,559	+				-0.9
3,533,559	+				+0.6
3,533,560	-				+1.5
3,533,560	-				+0.4
3,533,613	+				+0.9
3,533,634	+				+0.9
3,533,635	-				-3.3
3,533,657	+				-1.7
3,533,657	+				+0.3
3,533,657	+				+0.2
3,533,657	+				-2.2
3,533,657	+				+0.9
3,533,658	-				+0.7
3,533,658	-				-1.0
3,533,658	-				+0.1
3,533,658	-				+1.7
3,533,658	-				-0.3
3,533,686	-		IAI47_16705	0.11	-0.6
3,533,726	+		IAI47_16705	0.13	-0.3
3,533,726	+		IAI47_16705	0.13	-1.0
3,533,726	+		IAI47_16705	0.13	-1.3
3,533,726	+		IAI47_16705	0.13	-1.6
3,533,726	+		IAI47_16705	0.13	+0.4
3,533,726	+		IAI47_16705	0.13	-2.4
3,533,726	+		IAI47_16705	0.13	+0.6
3,533,726	+		IAI47_16705	0.13	+0.2
3,533,726	+		IAI47_16705	0.13	-1.4
3,533,726	+		IAI47_16705	0.13	+2.3
3,533,727	-		IAI47_16705	0.13	-0.3
3,533,727	-		IAI47_16705	0.13	+0.5
3,533,727	-		IAI47_16705	0.13	+2.6
3,533,727	-		IAI47_16705	0.13	+1.7
3,533,727	-		IAI47_16705	0.13	+0.2
3,533,727	-		IAI47_16705	0.13	+1.1
3,533,727	-		IAI47_16705	0.13	-1.1
3,533,727	-		IAI47_16705	0.13	-0.5
3,533,727	-		IAI47_16705	0.13	+0.0
3,533,727	-		IAI47_16705	0.13	+1.3
3,533,727	-		IAI47_16705	0.13	-0.5
3,533,727	-		IAI47_16705	0.13	-0.0
3,533,727	-		IAI47_16705	0.13	-0.4
3,533,727	-		IAI47_16705	0.13	-2.0
3,533,727	-		IAI47_16705	0.13	+0.1
3,533,727	-		IAI47_16705	0.13	+1.1
3,533,727	-		IAI47_16705	0.13	-1.2
3,533,730	+		IAI47_16705	0.14	+1.0
3,533,730	+		IAI47_16705	0.14	+0.1
3,533,731	-		IAI47_16705	0.14	+0.3
3,533,731	-		IAI47_16705	0.14	+0.1
3,533,731	-		IAI47_16705	0.14	-0.2
3,533,731	-		IAI47_16705	0.14	-1.9
3,533,769	+		IAI47_16705	0.16	+0.4
3,533,769	+		IAI47_16705	0.16	-0.4
3,533,769	+		IAI47_16705	0.16	+1.2
3,533,770	-		IAI47_16705	0.16	-0.9
3,533,770	-		IAI47_16705	0.16	+0.5
3,533,859	+		IAI47_16705	0.21	-0.3
3,533,859	+		IAI47_16705	0.21	+1.0
3,533,860	-		IAI47_16705	0.21	+1.1
3,533,901	-		IAI47_16705	0.23	+0.9
3,533,901	-		IAI47_16705	0.23	-0.3
3,533,921	+		IAI47_16705	0.24	-1.2
3,533,921	+		IAI47_16705	0.24	-0.2
3,533,921	+		IAI47_16705	0.24	+0.6
3,533,921	+		IAI47_16705	0.24	-1.7
3,533,921	+		IAI47_16705	0.24	-0.3
3,533,922	-		IAI47_16705	0.24	+1.6
3,533,922	-		IAI47_16705	0.24	+0.4
3,533,922	-		IAI47_16705	0.24	-1.3
3,533,922	-		IAI47_16705	0.24	+0.3
3,533,922	-		IAI47_16705	0.24	+0.8
3,533,922	-		IAI47_16705	0.24	+0.0
3,533,922	-		IAI47_16705	0.24	-1.0
3,533,925	+		IAI47_16705	0.25	-1.9
3,533,925	+		IAI47_16705	0.25	-1.3
3,533,926	-		IAI47_16705	0.25	-3.0
3,533,926	-		IAI47_16705	0.25	+0.6
3,533,926	-		IAI47_16705	0.25	+0.8
3,533,926	-		IAI47_16705	0.25	-1.3
3,533,926	-		IAI47_16705	0.25	+0.4
3,533,926	-		IAI47_16705	0.25	+0.5
3,533,926	-		IAI47_16705	0.25	-0.4
3,533,934	-		IAI47_16705	0.25	-0.1
3,533,978	+		IAI47_16705	0.28	+1.0
3,533,978	+		IAI47_16705	0.28	-1.8
3,533,978	+		IAI47_16705	0.28	-2.0
3,533,978	+		IAI47_16705	0.28	+1.2
3,533,979	-		IAI47_16705	0.28	-0.8
3,534,002	+		IAI47_16705	0.29	+0.1
3,534,002	+		IAI47_16705	0.29	+1.6
3,534,002	+		IAI47_16705	0.29	-2.6
3,534,002	+		IAI47_16705	0.29	-0.5
3,534,003	-		IAI47_16705	0.29	-2.1
3,534,003	-		IAI47_16705	0.29	+1.0
3,534,003	-		IAI47_16705	0.29	+1.7
3,534,003	-		IAI47_16705	0.29	+0.9
3,534,043	-		IAI47_16705	0.31	+0.5
3,534,043	-		IAI47_16705	0.31	+1.3
3,534,132	+		IAI47_16705	0.36	+1.1
3,534,132	+		IAI47_16705	0.36	-1.4
3,534,133	-		IAI47_16705	0.36	+1.0
3,534,133	-		IAI47_16705	0.36	+1.7
3,534,138	+		IAI47_16705	0.37	+0.0
3,534,139	-		IAI47_16705	0.37	+0.7
3,534,139	-		IAI47_16705	0.37	-0.3
3,534,139	-		IAI47_16705	0.37	-0.0
3,534,186	+		IAI47_16705	0.39	-0.9
3,534,231	-		IAI47_16705	0.42	+1.1
3,534,234	+		IAI47_16705	0.42	-0.8
3,534,234	+		IAI47_16705	0.42	-1.0
3,534,235	-		IAI47_16705	0.42	-1.6
3,534,241	+		IAI47_16705	0.42	+0.2
3,534,241	+		IAI47_16705	0.42	+1.8
3,534,269	+		IAI47_16705	0.44	+0.2
3,534,269	+		IAI47_16705	0.44	+0.7
3,534,269	+		IAI47_16705	0.44	-0.1
3,534,269	+		IAI47_16705	0.44	+2.5
3,534,270	-		IAI47_16705	0.44	-0.1
3,534,270	-		IAI47_16705	0.44	+0.7
3,534,270	-		IAI47_16705	0.44	+0.0
3,534,270	-		IAI47_16705	0.44	+0.2
3,534,312	-		IAI47_16705	0.46	+0.4
3,534,380	+		IAI47_16705	0.50	-0.9
3,534,380	+		IAI47_16705	0.50	-0.6
3,534,380	+		IAI47_16705	0.50	-0.3
3,534,380	+		IAI47_16705	0.50	+2.2
3,534,380	+		IAI47_16705	0.50	-0.1
3,534,380	+		IAI47_16705	0.50	-0.9
3,534,380	+		IAI47_16705	0.50	-0.5
3,534,381	-		IAI47_16705	0.50	+2.3
3,534,381	-		IAI47_16705	0.50	+0.8
3,534,406	-		IAI47_16705	0.52	-1.0
3,534,406	-		IAI47_16705	0.52	+0.7
3,534,406	-		IAI47_16705	0.52	-1.1
3,534,406	-		IAI47_16705	0.52	+0.9
3,534,449	+		IAI47_16705	0.54	-0.4
3,534,449	+		IAI47_16705	0.54	+0.0
3,534,449	+		IAI47_16705	0.54	-1.4
3,534,450	-		IAI47_16705	0.54	+0.5
3,534,450	-		IAI47_16705	0.54	+0.6