Strain Fitness in Pantoea sp. MT58 around IAI47_11220

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,371,628	+		IAI47_11215	0.18	+1.6
2,371,635	+		IAI47_11215	0.19	-1.6
2,371,635	+		IAI47_11215	0.19	+0.7
2,371,635	+		IAI47_11215	0.19	-0.6
2,371,636	-		IAI47_11215	0.19	-1.0
2,371,636	-		IAI47_11215	0.19	+0.5
2,371,636	-		IAI47_11215	0.19	-0.6
2,371,705	+		IAI47_11215	0.25	+1.2
2,371,705	+		IAI47_11215	0.25	+0.4
2,371,705	+		IAI47_11215	0.25	-2.1
2,371,705	+		IAI47_11215	0.25	-1.4
2,371,705	+		IAI47_11215	0.25	-1.4
2,371,705	+		IAI47_11215	0.25	-0.0
2,371,705	+		IAI47_11215	0.25	-1.6
2,371,706	-		IAI47_11215	0.25	+1.7
2,371,706	-		IAI47_11215	0.25	+0.0
2,371,706	-		IAI47_11215	0.25	-0.3
2,371,706	-		IAI47_11215	0.25	-1.3
2,371,859	+		IAI47_11215	0.38	-0.1
2,371,859	+		IAI47_11215	0.38	-0.0
2,371,860	-		IAI47_11215	0.38	-1.6
2,372,034	+		IAI47_11215	0.54	-1.1
2,372,111	+		IAI47_11215	0.61	+0.5
2,372,112	-		IAI47_11215	0.61	-1.2
2,372,149	-		IAI47_11215	0.64	+0.4
2,372,149	-		IAI47_11215	0.64	+2.0
2,372,175	+		IAI47_11215	0.66	+0.7
2,372,183	+		IAI47_11215	0.67	-0.2
2,372,183	+		IAI47_11215	0.67	-0.4
2,372,183	+		IAI47_11215	0.67	-0.9
2,372,184	-		IAI47_11215	0.67	+0.7
2,372,184	-		IAI47_11215	0.67	-1.8
2,372,184	-		IAI47_11215	0.67	+1.6
2,372,197	+		IAI47_11215	0.68	-1.5
2,372,197	+		IAI47_11215	0.68	-2.3
2,372,197	+		IAI47_11215	0.68	-1.9
2,372,197	+		IAI47_11215	0.68	-1.4
2,372,197	+		IAI47_11215	0.68	-1.0
2,372,197	+		IAI47_11215	0.68	+1.0
2,372,198	-		IAI47_11215	0.68	-0.2
2,372,198	-		IAI47_11215	0.68	-0.5
2,372,198	-		IAI47_11215	0.68	-0.9
2,372,198	-		IAI47_11215	0.68	-2.8
2,372,198	-		IAI47_11215	0.68	-1.4
2,372,198	-		IAI47_11215	0.68	+0.5
2,372,220	+		IAI47_11215	0.70	+0.5
2,372,220	+		IAI47_11215	0.70	-0.8
2,372,220	+		IAI47_11215	0.70	+0.4
2,372,240	+		IAI47_11215	0.72	-2.0
2,372,240	+		IAI47_11215	0.72	-1.7
2,372,240	+		IAI47_11215	0.72	+2.0
2,372,240	+		IAI47_11215	0.72	-1.8
2,372,241	-		IAI47_11215	0.72	+3.6
2,372,304	+		IAI47_11215	0.77	+0.1
2,372,328	+		IAI47_11215	0.80	+0.4
2,372,329	-		IAI47_11215	0.80	+1.3
2,372,372	+		IAI47_11215	0.83	-0.9
2,372,420	-		IAI47_11215	0.88	-0.4
2,372,420	-		IAI47_11215	0.88	-0.7
2,372,430	+		IAI47_11215	0.89	+2.7
2,372,430	+		IAI47_11215	0.89	+1.1
2,372,430	+		IAI47_11215	0.89	+0.4
2,372,430	+		IAI47_11215	0.89	+0.1
2,372,430	+		IAI47_11215	0.89	+1.1
2,372,430	+		IAI47_11215	0.89	-2.0
2,372,430	+		IAI47_11215	0.89	-1.8
2,372,430	+		IAI47_11215	0.89	+1.5
2,372,430	+		IAI47_11215	0.89	-0.8
2,372,431	-		IAI47_11215	0.89	+0.3
2,372,431	-		IAI47_11215	0.89	+0.3
2,372,431	-		IAI47_11215	0.89	-1.2
2,372,431	-		IAI47_11215	0.89	-2.3
2,372,431	-		IAI47_11215	0.89	+0.2
2,372,434	+		IAI47_11215	0.89	+1.4
2,372,434	+		IAI47_11215	0.89	-1.3
2,372,435	-		IAI47_11215	0.89	-0.4
2,372,435	-		IAI47_11215	0.89	-1.1
2,372,503	+				-0.2
2,372,503	+				-0.8
2,372,504	-				-0.7
2,372,504	-				-0.0
2,372,504	-				-2.8
2,372,504	-				-0.0
2,372,524	+				-1.0
2,372,524	+				-0.9
2,372,524	+				-0.2
2,372,525	-				-2.5
2,372,593	+				-0.1
2,372,593	+				-0.8
2,372,639	+		IAI47_11220	0.11	-1.5
2,372,639	+		IAI47_11220	0.11	-0.1
2,372,639	+		IAI47_11220	0.11	-0.2
2,372,639	+		IAI47_11220	0.11	-0.7
2,372,639	+		IAI47_11220	0.11	-3.0
2,372,640	-		IAI47_11220	0.11	+0.3
2,372,732	-		IAI47_11220	0.23	+1.6
2,372,732	-		IAI47_11220	0.23	+0.6
2,372,732	-		IAI47_11220	0.23	-1.0
2,372,826	+		IAI47_11220	0.35	-1.7
2,372,827	-		IAI47_11220	0.35	-2.4
2,372,827	-		IAI47_11220	0.35	-0.4
2,372,840	+		IAI47_11220	0.37	-3.0
2,372,840	+		IAI47_11220	0.37	-0.8
2,372,840	+		IAI47_11220	0.37	-2.4
2,372,841	-		IAI47_11220	0.37	+0.7
2,372,841	-		IAI47_11220	0.37	-0.6
2,372,861	+		IAI47_11220	0.39	-3.4
2,372,874	-		IAI47_11220	0.41	-0.6
2,372,916	+		IAI47_11220	0.46	-0.8
2,372,947	+		IAI47_11220	0.50	-2.2
2,372,947	+		IAI47_11220	0.50	+0.0
2,372,948	-		IAI47_11220	0.50	-0.7
2,373,008	+		IAI47_11220	0.58	-2.8
2,373,015	-		IAI47_11220	0.59	-0.6
2,373,019	+		IAI47_11220	0.60	-1.4
2,373,020	-		IAI47_11220	0.60	-0.4
2,373,024	+		IAI47_11220	0.60	-0.4
2,373,024	+		IAI47_11220	0.60	-1.7
2,373,026	+		IAI47_11220	0.60	-3.4
2,373,026	+		IAI47_11220	0.60	-1.2
2,373,027	-		IAI47_11220	0.61	+0.6
2,373,056	-		IAI47_11220	0.64	+1.2
2,373,233	+		IAI47_11220	0.87	-1.9
2,373,233	+		IAI47_11220	0.87	-2.8
2,373,288	+				-1.5
2,373,288	+				-1.6
2,373,289	-				+0.4
2,373,346	+				+1.1
2,373,347	-				-0.1
2,373,353	+				+1.6
2,373,391	+				+1.3
2,373,392	-				-2.3
2,373,422	+				-0.7
2,373,422	+				+0.7
2,373,422	+				+1.0
2,373,423	-				+1.4
2,373,423	-				+0.6
2,373,423	-				+0.5
2,373,423	-				+1.6
2,373,449	+		IAI47_11225	0.11	+0.2
2,373,449	+		IAI47_11225	0.11	+2.8
2,373,449	+		IAI47_11225	0.11	+0.5
2,373,449	+		IAI47_11225	0.11	-0.4
2,373,449	+		IAI47_11225	0.11	+1.1
2,373,449	+		IAI47_11225	0.11	+2.0
2,373,450	-		IAI47_11225	0.11	+0.5
2,373,450	-		IAI47_11225	0.11	-1.9
2,373,457	+		IAI47_11225	0.12	+1.6
2,373,490	+		IAI47_11225	0.15	+0.7
2,373,490	+		IAI47_11225	0.15	-1.8
2,373,490	+		IAI47_11225	0.15	-0.7
2,373,491	-		IAI47_11225	0.15	-1.7
2,373,491	-		IAI47_11225	0.15	-1.9
2,373,491	-		IAI47_11225	0.15	+0.1
2,373,523	+		IAI47_11225	0.18	+2.2
2,373,524	-		IAI47_11225	0.19	-1.3
2,373,685	+		IAI47_11225	0.35	+0.8
2,373,686	-		IAI47_11225	0.36	-1.6
2,373,686	-		IAI47_11225	0.36	+1.2
2,373,686	-		IAI47_11225	0.36	-0.0
2,373,686	-		IAI47_11225	0.36	-1.4
2,373,760	+		IAI47_11225	0.43	-0.1
2,373,760	+		IAI47_11225	0.43	+0.1
2,373,761	-		IAI47_11225	0.43	-0.9
2,373,761	-		IAI47_11225	0.43	+1.1
2,373,841	+		IAI47_11225	0.52	-1.1
2,373,841	+		IAI47_11225	0.52	-2.0
2,373,842	-		IAI47_11225	0.52	+1.0
2,373,842	-		IAI47_11225	0.52	+0.7
2,373,843	+		IAI47_11225	0.52	+0.7
2,373,844	-		IAI47_11225	0.52	-0.7
2,373,950	+		IAI47_11225	0.63	-2.1
2,373,950	+		IAI47_11225	0.63	+0.8
2,373,950	+		IAI47_11225	0.63	-2.0
2,373,950	+		IAI47_11225	0.63	+0.4
2,373,950	+		IAI47_11225	0.63	+0.1
2,373,950	+		IAI47_11225	0.63	+1.1
2,373,950	+		IAI47_11225	0.63	+0.2
2,373,950	+		IAI47_11225	0.63	+1.2
2,373,950	+		IAI47_11225	0.63	+0.8
2,373,951	-		IAI47_11225	0.63	+0.8
2,373,951	-		IAI47_11225	0.63	-2.8
2,373,951	-		IAI47_11225	0.63	-0.3
2,373,951	-		IAI47_11225	0.63	-1.7
2,374,015	+		IAI47_11225	0.70	+0.7
2,374,015	+		IAI47_11225	0.70	+0.1
2,374,015	+		IAI47_11225	0.70	+0.3
2,374,015	+		IAI47_11225	0.70	+0.7
2,374,015	+		IAI47_11225	0.70	+0.6
2,374,015	+		IAI47_11225	0.70	+1.0
2,374,015	+		IAI47_11225	0.70	-0.0
2,374,016	-		IAI47_11225	0.70	-0.5
2,374,054	+		IAI47_11225	0.74	-2.2
2,374,055	-		IAI47_11225	0.74	-0.7
2,374,055	-		IAI47_11225	0.74	-0.5
2,374,120	+		IAI47_11225	0.81	+0.1
2,374,121	-		IAI47_11225	0.81	-0.1
2,374,130	-		IAI47_11225	0.82	-1.4
2,374,178	-		IAI47_11225	0.87	-1.0
2,374,202	+		IAI47_11225	0.90	+1.4
2,374,202	+		IAI47_11225	0.90	+0.3
2,374,202	+		IAI47_11225	0.90	-2.7
2,374,203	-		IAI47_11225	0.90	+1.2
2,374,233	+				-0.6
2,374,233	+				-0.6
2,374,233	+				+0.3
2,374,233	+				-1.6
2,374,233	+				-0.1
2,374,233	+				+0.5
2,374,234	-				+0.7
2,374,234	-				-0.3
2,374,234	-				+0.4
2,374,237	+				+0.6
2,374,237	+				+0.9
2,374,238	-				+0.9
2,374,238	-				+1.4
2,374,288	+				-0.6
2,374,298	+				+1.0
2,374,299	-				-0.2
2,374,299	-				-0.9
2,374,330	+				-2.1
2,374,331	-				+1.7