Strain Fitness in Pantoea sp. MT58 around IAI47_11110

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,343,053	+				-1.2
2,343,054	-				+0.1
2,343,054	-				-0.3
2,343,065	+				+0.4
2,343,065	+				-1.4
2,343,066	-				-0.4
2,343,066	-				+1.1
2,343,106	+				-1.0
2,343,106	+				+0.7
2,343,106	+				+0.8
2,343,107	-				+0.1
2,343,126	+				+0.8
2,343,126	+				-0.6
2,343,126	+				-0.6
2,343,127	-				+1.5
2,343,127	-				-0.4
2,343,127	-				+1.0
2,343,142	+				+0.4
2,343,142	+				-1.0
2,343,142	+				+1.2
2,343,142	+				-1.3
2,343,142	+				-0.7
2,343,143	-				-0.2
2,343,152	+				+1.4
2,343,168	+				-1.8
2,343,169	-				+0.1
2,343,169	-				-0.1
2,343,169	-				+0.1
2,343,169	-				+1.5
2,343,177	+				-0.0
2,343,177	+				+0.4
2,343,178	-				+0.2
2,343,190	-				+0.5
2,343,190	-				-0.7
2,343,203	+				-0.6
2,343,203	+				+0.1
2,343,203	+				-0.5
2,343,204	-				-1.0
2,343,218	+				+1.3
2,343,218	+				-1.5
2,343,218	+				-2.0
2,343,219	-				+3.4
2,343,231	+				+0.6
2,343,231	-				+0.8
2,343,231	-				+1.0
2,343,254	-				-1.0
2,343,324	+				-1.9
2,343,324	+				+0.8
2,343,325	-				+0.7
2,343,346	-				-0.6
2,343,362	+				+1.0
2,343,362	+				-1.7
2,343,362	+				-1.3
2,343,362	+				+1.0
2,343,363	-				+1.1
2,343,363	-				+1.1
2,343,364	+				+1.4
2,343,364	+				+0.4
2,343,365	-				-0.2
2,343,365	-				-1.0
2,343,365	-				+0.9
2,343,365	-				-2.1
2,343,365	-				-1.8
2,343,394	+				-1.8
2,343,395	-				+0.3
2,343,401	+				+1.7
2,343,445	+				+0.5
2,343,446	-				-1.5
2,343,464	+				+0.4
2,343,465	-				-0.7
2,343,465	-				-1.3
2,343,472	+				+0.0
2,343,472	+				+0.9
2,343,473	-				+1.8
2,343,473	-				+1.0
2,343,473	-				+1.0
2,343,484	-				-0.9
2,343,484	-				-0.4
2,343,484	-				-0.4
2,343,489	+				-0.9
2,343,490	-				-0.7
2,343,490	-				-1.9
2,343,501	+				-0.3
2,343,501	+				+0.1
2,343,501	+				+0.1
2,343,501	+				-1.0
2,343,502	-				+0.6
2,343,502	-				-1.5
2,343,502	-				-2.2
2,343,626	+				-0.0
2,343,627	-				+0.4
2,343,672	-				+0.3
2,343,729	-				-1.4
2,343,735	+				-0.7
2,343,735	+				-0.6
2,343,735	+				-0.2
2,343,736	-				-1.9
2,343,736	-				-1.7
2,343,736	-				+1.4
2,343,738	+				-0.9
2,343,738	+				-0.5
2,343,738	+				+1.4
2,343,738	+				+1.2
2,343,738	+				-2.1
2,343,739	-				+0.1
2,343,739	-				-0.9
2,343,739	-				+1.4
2,343,739	-				+1.3
2,343,739	-				+0.5
2,343,739	-				-0.1
2,343,739	-				-0.4
2,343,739	-				-0.9
2,343,746	+				+0.3
2,343,746	+				+0.3
2,343,746	+				-0.6
2,343,757	+				-0.7
2,343,757	+				+1.3
2,343,769	+				+0.0
2,343,770	-				-0.3
2,343,780	-				-1.7
2,343,781	+				+0.1
2,343,781	+				-0.2
2,343,782	-				+1.5
2,343,782	-				-2.5
2,343,808	+				-0.4
2,343,840	+				-1.0
2,343,840	+				+0.3
2,343,840	+				+1.0
2,343,841	-				-1.3
2,343,932	+				+1.6
2,343,932	+				+0.6
2,343,934	-				-0.2
2,343,974	+				-1.5
2,343,974	+				+0.4
2,343,975	-				-0.8
2,343,975	-				+0.2
2,343,997	+				-0.7
2,343,998	-				+0.1
2,343,998	-				+2.6
2,343,998	-				-0.5
2,343,998	-				-0.7
2,344,004	-				-0.5
2,344,004	-				+0.5
2,344,004	-				-2.9
2,344,004	-				+0.6
2,344,004	-				-1.2
2,344,091	+		IAI47_11110	0.20	+2.2
2,344,091	+		IAI47_11110	0.20	+0.9
2,344,091	+		IAI47_11110	0.20	+0.8
2,344,091	+		IAI47_11110	0.20	+1.3
2,344,092	-		IAI47_11110	0.20	+1.1
2,344,092	-		IAI47_11110	0.20	-0.5
2,344,092	-		IAI47_11110	0.20	+0.9
2,344,092	-		IAI47_11110	0.20	+0.6
2,344,121	+		IAI47_11110	0.26	+1.0
2,344,121	+		IAI47_11110	0.26	+2.0
2,344,121	+		IAI47_11110	0.26	-0.7
2,344,121	+		IAI47_11110	0.26	+3.9
2,344,122	-		IAI47_11110	0.26	-1.3
2,344,122	-		IAI47_11110	0.26	+0.0
2,344,163	+		IAI47_11110	0.35	+2.7
2,344,163	+		IAI47_11110	0.35	-0.2
2,344,164	-		IAI47_11110	0.35	-0.0
2,344,164	-		IAI47_11110	0.35	-0.7
2,344,250	-		IAI47_11110	0.52	+1.4
2,344,360	+		IAI47_11110	0.74	-2.0
2,344,360	+		IAI47_11110	0.74	+0.4
2,344,391	-		IAI47_11110	0.81	+2.3
2,344,402	-		IAI47_11110	0.83	-0.2
2,344,409	-		IAI47_11110	0.84	+1.1
2,344,409	-		IAI47_11110	0.84	+0.4
2,344,417	+		IAI47_11110	0.86	-0.8
2,344,417	+		IAI47_11110	0.86	+2.1
2,344,417	+		IAI47_11110	0.86	-0.5
2,344,417	+		IAI47_11110	0.86	+1.6
2,344,418	-		IAI47_11110	0.86	+0.9
2,344,418	-		IAI47_11110	0.86	+0.7
2,344,517	+				-0.7
2,344,517	+				-0.8
2,344,517	+				-0.2
2,344,517	+				-0.7
2,344,521	+				-0.4
2,344,521	+				+1.2
2,344,521	+				-0.9
2,344,522	-				-0.1
2,344,530	+				+1.4
2,344,530	+				-0.5
2,344,530	+				+2.1
2,344,530	+				-1.7
2,344,530	+				-0.5
2,344,531	-				+0.2
2,344,531	-				-0.6
2,344,561	+				+1.4
2,344,589	+		IAI47_11115	0.21	-0.0
2,344,589	+		IAI47_11115	0.21	+0.4
2,344,602	-		IAI47_11115	0.26	+1.6
2,344,636	+		IAI47_11115	0.40	+0.5
2,344,636	+		IAI47_11115	0.40	+0.2
2,344,636	+		IAI47_11115	0.40	-0.9
2,344,636	+		IAI47_11115	0.40	+1.7
2,344,637	-		IAI47_11115	0.41	-0.9
2,344,637	-		IAI47_11115	0.41	+0.6
2,344,673	-		IAI47_11115	0.56	+2.4
2,344,738	-		IAI47_11115	0.83	+1.8
2,344,742	+		IAI47_11115	0.85	+2.1
2,344,832	+				+1.6
2,344,850	-				-0.4
2,344,882	+				+0.1
2,344,882	+				+0.9
2,344,883	-				+0.8
2,344,883	-				+3.2
2,344,932	+				-2.7
2,344,932	+				-0.6
2,344,933	-				+0.9
2,344,933	-				-1.3
2,344,937	+				+0.5
2,344,937	+				+0.5
2,344,937	+				-0.5
2,344,937	+				+0.0
2,344,938	-				+0.3
2,344,938	-				-2.3
2,344,946	+				-0.1
2,344,947	-				+1.8
2,345,034	+		IAI47_11120	0.13	+0.7
2,345,034	+		IAI47_11120	0.13	-0.6
2,345,066	+		IAI47_11120	0.15	-1.3
2,345,099	+		IAI47_11120	0.18	-1.2
2,345,099	+		IAI47_11120	0.18	+0.8
2,345,116	-		IAI47_11120	0.19	+0.8
2,345,205	+		IAI47_11120	0.25	-1.6
2,345,205	+		IAI47_11120	0.25	+3.4
2,345,206	-		IAI47_11120	0.25	-1.2
2,345,206	-		IAI47_11120	0.25	-2.4
2,345,264	+		IAI47_11120	0.29	+0.3
2,345,269	+		IAI47_11120	0.29	+0.4
2,345,306	+		IAI47_11120	0.32	+0.1
2,345,348	-		IAI47_11120	0.35	+1.6
2,345,348	-		IAI47_11120	0.35	+0.5
2,345,348	-		IAI47_11120	0.35	+0.2
2,345,348	-		IAI47_11120	0.35	+0.4
2,345,357	+		IAI47_11120	0.35	+0.2
2,345,438	-		IAI47_11120	0.41	+2.3
2,345,486	+		IAI47_11120	0.44	-0.5
2,345,486	+		IAI47_11120	0.44	-0.3