Strain Fitness in Pantoea sp. MT58 around IAI47_10565

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,234,536	+		IAI47_10560	0.13	-0.8
2,234,536	+		IAI47_10560	0.13	-1.0
2,234,537	-		IAI47_10560	0.13	-1.3
2,234,541	+		IAI47_10560	0.13	-1.2
2,234,542	-		IAI47_10560	0.13	+2.8
2,234,559	-		IAI47_10560	0.16	-1.1
2,234,597	-		IAI47_10560	0.22	+1.2
2,234,597	-		IAI47_10560	0.22	-0.8
2,234,597	-		IAI47_10560	0.22	+1.0
2,234,648	-		IAI47_10560	0.31	+0.8
2,234,648	-		IAI47_10560	0.31	-0.5
2,234,648	-		IAI47_10560	0.31	+0.7
2,234,766	+		IAI47_10560	0.50	-0.2
2,234,766	+		IAI47_10560	0.50	+0.3
2,234,767	-		IAI47_10560	0.50	-0.6
2,234,774	+		IAI47_10560	0.51	-1.7
2,234,775	-		IAI47_10560	0.51	+2.2
2,234,775	-		IAI47_10560	0.51	+1.8
2,234,775	-		IAI47_10560	0.51	+1.3
2,234,837	-		IAI47_10560	0.61	+1.2
2,234,853	+		IAI47_10560	0.64	+0.6
2,234,854	-		IAI47_10560	0.64	-0.9
2,234,854	-		IAI47_10560	0.64	+1.3
2,234,902	+		IAI47_10560	0.72	+2.1
2,234,903	-		IAI47_10560	0.72	+2.5
2,234,903	-		IAI47_10560	0.72	+0.9
2,234,903	-		IAI47_10560	0.72	-0.2
2,234,904	+		IAI47_10560	0.72	-0.5
2,234,904	+		IAI47_10560	0.72	+0.1
2,234,905	-		IAI47_10560	0.73	+0.1
2,234,905	-		IAI47_10560	0.73	+2.1
2,234,905	-		IAI47_10560	0.73	-1.3
2,234,905	-		IAI47_10560	0.73	-0.2
2,234,905	-		IAI47_10560	0.73	+0.2
2,234,905	-		IAI47_10560	0.73	+2.2
2,234,948	+		IAI47_10560	0.80	+2.4
2,234,949	-		IAI47_10560	0.80	+1.1
2,234,949	-		IAI47_10560	0.80	-2.1
2,235,074	+				-2.1
2,235,074	+				+2.4
2,235,075	-				+1.7
2,235,079	-				+0.4
2,235,079	-				-0.8
2,235,123	+				-0.9
2,235,124	-				+0.2
2,235,124	-				-2.0
2,235,145	+				-0.3
2,235,145	+				+0.7
2,235,145	+				+1.6
2,235,145	+				-0.1
2,235,145	+				-0.4
2,235,145	+				+0.0
2,235,145	+				-0.1
2,235,145	+				-1.4
2,235,145	+				-0.3
2,235,145	+				-0.9
2,235,146	-				+0.6
2,235,146	-				+2.2
2,235,146	-				+1.3
2,235,146	-				+1.4
2,235,146	-				+0.7
2,235,146	-				+0.5
2,235,146	-				+0.8
2,235,146	-				+1.6
2,235,146	-				-1.5
2,235,146	-				+1.1
2,235,146	-				+0.6
2,235,147	+				+1.5
2,235,147	+				+1.7
2,235,147	+				+0.9
2,235,147	+				+0.1
2,235,147	+				+1.2
2,235,147	+				+1.4
2,235,147	+				-1.3
2,235,147	+				+1.3
2,235,148	-				-1.6
2,235,148	-				+0.8
2,235,148	-				+0.1
2,235,173	+				-0.3
2,235,173	+				-0.5
2,235,174	-				+2.6
2,235,174	-				+1.8
2,235,174	-				-2.4
2,235,174	-				+0.7
2,235,174	-				-0.2
2,235,221	+				+1.1
2,235,221	+				-1.1
2,235,253	+				-0.6
2,235,284	+				+0.5
2,235,285	-				+0.6
2,235,285	-				-0.6
2,235,285	-				+1.0
2,235,285	-				-0.3
2,235,285	-				+1.2
2,235,287	+				+1.2
2,235,288	-				-0.7
2,235,329	+				-0.5
2,235,330	-				-0.3
2,235,330	-				+1.9
2,235,330	-				-0.6
2,235,332	+				+2.4
2,235,332	+				-0.8
2,235,333	-				-1.1
2,235,333	-				-2.1
2,235,333	-				+0.2
2,235,333	-				-0.4
2,235,358	+				-1.0
2,235,358	+				-0.1
2,235,358	+				-0.8
2,235,359	-				-0.4
2,235,362	+				+0.6
2,235,362	+				-1.5
2,235,362	+				-0.1
2,235,363	-				+0.5
2,235,363	-				+1.7
2,235,363	-				-3.0
2,235,396	+				-0.1
2,235,396	+				-0.2
2,235,396	+				+1.5
2,235,396	+				+0.2
2,235,397	-				+1.1
2,235,399	-				-1.1
2,235,418	+				+1.6
2,235,450	+				+1.8
2,235,450	+				-0.9
2,235,450	+				+2.2
2,235,450	+				+0.1
2,235,451	-				-0.5
2,235,451	-				-1.1
2,235,451	-				-2.1
2,235,451	-				-0.8
2,235,477	+				+3.9
2,235,477	+				+0.6
2,235,477	+				+0.5
2,235,478	-				-0.6
2,235,478	-				+1.4
2,235,478	-				+0.8
2,235,478	-				-0.9
2,235,478	-				-0.1
2,235,518	-		IAI47_10565	0.27	-0.1
2,235,520	-		IAI47_10565	0.28	-1.0
2,235,613	+		IAI47_10565	0.88	-1.1
2,235,614	-		IAI47_10565	0.88	-1.9
2,235,645	+				-0.7
2,235,645	+				+0.8
2,235,646	-				+1.5
2,235,646	-				-0.6
2,235,646	-				+0.6
2,235,646	-				+0.6
2,235,655	+				-0.1
2,235,656	-				-2.3
2,235,717	-				+0.7
2,235,780	+				+1.4
2,235,780	+				+2.5
2,235,781	-				+1.4
2,235,827	+				-0.2
2,235,835	+				-1.9
2,235,835	+				+0.2
2,235,902	+				+1.9
2,235,902	+				-0.5
2,235,902	+				+0.5
2,235,902	+				+0.7
2,235,903	-				+0.3
2,235,922	+		IAI47_10570	0.11	-0.3
2,235,923	-		IAI47_10570	0.12	-1.9
2,235,928	+		IAI47_10570	0.12	+2.7
2,235,928	+		IAI47_10570	0.12	-0.4
2,235,930	+		IAI47_10570	0.12	-0.5
2,235,930	+		IAI47_10570	0.12	+1.1
2,235,931	-		IAI47_10570	0.12	-2.8
2,235,931	-		IAI47_10570	0.12	-0.2
2,235,931	-		IAI47_10570	0.12	+0.8
2,235,931	-		IAI47_10570	0.12	-1.5
2,235,931	-		IAI47_10570	0.12	+0.2
2,235,931	-		IAI47_10570	0.12	-1.1
2,235,942	+		IAI47_10570	0.13	+1.0
2,235,943	-		IAI47_10570	0.13	+0.1
2,235,943	-		IAI47_10570	0.13	+1.5
2,235,943	-		IAI47_10570	0.13	-1.3
2,235,943	-		IAI47_10570	0.13	-2.1
2,235,943	-		IAI47_10570	0.13	+1.8
2,235,943	-		IAI47_10570	0.13	-0.3
2,235,988	+		IAI47_10570	0.17	+0.3
2,235,988	+		IAI47_10570	0.17	+0.3
2,235,988	+		IAI47_10570	0.17	+1.0
2,235,989	-		IAI47_10570	0.17	-0.6
2,235,989	-		IAI47_10570	0.17	+0.3
2,235,989	-		IAI47_10570	0.17	-0.4
2,235,989	-		IAI47_10570	0.17	+0.9
2,235,989	-		IAI47_10570	0.17	+0.1
2,235,992	+		IAI47_10570	0.17	+0.3
2,235,992	+		IAI47_10570	0.17	-1.3
2,235,992	+		IAI47_10570	0.17	+2.4
2,235,992	+		IAI47_10570	0.17	-0.8
2,235,993	-		IAI47_10570	0.17	+0.2
2,235,993	-		IAI47_10570	0.17	-1.8
2,236,033	-		IAI47_10570	0.20	+1.8
2,236,064	+		IAI47_10570	0.23	-0.7
2,236,064	+		IAI47_10570	0.23	+0.6
2,236,064	+		IAI47_10570	0.23	+1.4
2,236,064	+		IAI47_10570	0.23	-0.9
2,236,065	-		IAI47_10570	0.23	-0.7
2,236,065	-		IAI47_10570	0.23	-1.8
2,236,067	+		IAI47_10570	0.23	-1.4
2,236,068	-		IAI47_10570	0.23	-0.8
2,236,068	-		IAI47_10570	0.23	-0.2
2,236,068	-		IAI47_10570	0.23	+0.1
2,236,068	-		IAI47_10570	0.23	-0.7
2,236,081	+		IAI47_10570	0.24	-0.6
2,236,082	-		IAI47_10570	0.24	+0.4
2,236,082	-		IAI47_10570	0.24	-1.1
2,236,084	+		IAI47_10570	0.24	+0.5
2,236,084	+		IAI47_10570	0.24	+0.6
2,236,085	-		IAI47_10570	0.24	-0.6
2,236,085	-		IAI47_10570	0.24	-1.9
2,236,121	-		IAI47_10570	0.27	-1.1
2,236,121	-		IAI47_10570	0.27	-0.4
2,236,193	+		IAI47_10570	0.33	+3.7
2,236,193	+		IAI47_10570	0.33	-0.8
2,236,193	+		IAI47_10570	0.33	-0.1
2,236,193	+		IAI47_10570	0.33	+4.4
2,236,194	-		IAI47_10570	0.33	+1.4
2,236,194	-		IAI47_10570	0.33	+0.6
2,236,194	-		IAI47_10570	0.33	-0.4
2,236,194	-		IAI47_10570	0.33	-0.9
2,236,194	-		IAI47_10570	0.33	-0.1
2,236,194	-		IAI47_10570	0.33	+0.8
2,236,194	-		IAI47_10570	0.33	+0.2
2,236,197	+		IAI47_10570	0.33	-1.7
2,236,198	-		IAI47_10570	0.33	-2.8
2,236,198	-		IAI47_10570	0.33	-1.8
2,236,200	-		IAI47_10570	0.34	+1.2
2,236,212	+		IAI47_10570	0.35	-0.9
2,236,212	+		IAI47_10570	0.35	+2.4
2,236,212	+		IAI47_10570	0.35	+0.6
2,236,213	-		IAI47_10570	0.35	-1.8
2,236,231	+		IAI47_10570	0.36	-1.2
2,236,231	+		IAI47_10570	0.36	+1.5
2,236,232	-		IAI47_10570	0.36	+2.3
2,236,232	-		IAI47_10570	0.36	+0.9
2,236,257	-		IAI47_10570	0.38	-1.8
2,236,279	+		IAI47_10570	0.40	+0.2
2,236,280	-		IAI47_10570	0.40	+0.4
2,236,303	+		IAI47_10570	0.42	+0.1
2,236,304	-		IAI47_10570	0.42	-1.3
2,236,334	+		IAI47_10570	0.44	-1.7
2,236,335	-		IAI47_10570	0.44	-0.3
2,236,335	-		IAI47_10570	0.44	+1.1
2,236,360	+		IAI47_10570	0.46	+1.2
2,236,360	+		IAI47_10570	0.46	+1.6
2,236,360	+		IAI47_10570	0.46	-2.2
2,236,361	-		IAI47_10570	0.47	-0.9
2,236,361	-		IAI47_10570	0.47	-0.8
2,236,361	-		IAI47_10570	0.47	-0.1
2,236,370	-		IAI47_10570	0.47	-0.6
2,236,442	+		IAI47_10570	0.53	+1.2
2,236,606	+		IAI47_10570	0.66	-1.6
2,236,630	+		IAI47_10570	0.68	+0.9
2,236,631	-		IAI47_10570	0.68	+0.8
2,236,631	-		IAI47_10570	0.68	-0.9
2,236,631	-		IAI47_10570	0.68	-2.0