Strain Fitness in Pantoea sp. MT58 around IAI47_10345

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,189,240	+		IAI47_10340	0.32	+1.7
2,189,240	+		IAI47_10340	0.32	+0.8
2,189,241	-		IAI47_10340	0.32	-1.0
2,189,241	-		IAI47_10340	0.32	-0.1
2,189,242	+		IAI47_10340	0.32	-0.6
2,189,243	-		IAI47_10340	0.32	-0.1
2,189,273	+		IAI47_10340	0.34	-0.3
2,189,274	-		IAI47_10340	0.35	-0.2
2,189,398	+		IAI47_10340	0.45	+1.8
2,189,399	-		IAI47_10340	0.45	-1.7
2,189,419	+		IAI47_10340	0.47	+2.4
2,189,518	+		IAI47_10340	0.55	-0.8
2,189,519	-		IAI47_10340	0.55	+0.0
2,189,519	-		IAI47_10340	0.55	-2.8
2,189,519	-		IAI47_10340	0.55	-0.3
2,189,519	-		IAI47_10340	0.55	-0.6
2,189,534	+		IAI47_10340	0.57	+0.1
2,189,534	+		IAI47_10340	0.57	-0.1
2,189,535	-		IAI47_10340	0.57	-0.0
2,189,634	-		IAI47_10340	0.65	-1.4
2,189,705	+		IAI47_10340	0.71	+0.5
2,189,706	-		IAI47_10340	0.71	+0.4
2,189,706	-		IAI47_10340	0.71	-0.4
2,189,706	-		IAI47_10340	0.71	-1.3
2,189,706	-		IAI47_10340	0.71	+1.4
2,189,706	-		IAI47_10340	0.71	+0.5
2,189,708	-		IAI47_10340	0.71	-0.2
2,189,713	+		IAI47_10340	0.72	+1.2
2,189,836	+		IAI47_10340	0.82	+0.6
2,189,837	-		IAI47_10340	0.82	-1.8
2,189,837	-		IAI47_10340	0.82	-2.0
2,190,036	+				-1.9
2,190,037	-				-1.0
2,190,037	-				+0.2
2,190,066	-				-0.2
2,190,072	+				-0.6
2,190,073	-				-1.4
2,190,073	-				-0.4
2,190,075	+				-2.3
2,190,076	-				-1.2
2,190,076	-				-1.8
2,190,085	+				-0.3
2,190,085	+				+2.1
2,190,088	+				-1.5
2,190,089	-				-0.8
2,190,161	-				-0.2
2,190,198	+				-1.0
2,190,198	+				-0.9
2,190,198	+				-2.5
2,190,199	-				+0.2
2,190,199	-				+0.7
2,190,222	+				+0.0
2,190,222	+				+0.3
2,190,223	-				-1.1
2,190,314	+				-1.3
2,190,314	+				-1.4
2,190,315	-				+1.9
2,190,315	-				-1.5
2,190,315	-				+1.1
2,190,315	-				-2.0
2,190,315	-				-0.9
2,190,315	-				+0.4
2,190,315	-				+3.1
2,190,315	-				-1.1
2,190,344	+		IAI47_10345	0.11	-0.4
2,190,344	+		IAI47_10345	0.11	-2.0
2,190,344	+		IAI47_10345	0.11	-0.8
2,190,345	-		IAI47_10345	0.11	-1.2
2,190,345	-		IAI47_10345	0.11	-0.4
2,190,353	+		IAI47_10345	0.12	+0.0
2,190,353	+		IAI47_10345	0.12	-0.2
2,190,353	+		IAI47_10345	0.12	-1.5
2,190,354	-		IAI47_10345	0.12	-1.8
2,190,354	-		IAI47_10345	0.12	-2.2
2,190,381	+		IAI47_10345	0.14	-0.8
2,190,381	+		IAI47_10345	0.14	-0.5
2,190,381	+		IAI47_10345	0.14	-0.3
2,190,381	+		IAI47_10345	0.14	+0.5
2,190,382	-		IAI47_10345	0.14	-0.3
2,190,382	-		IAI47_10345	0.14	-0.4
2,190,382	-		IAI47_10345	0.14	-2.4
2,190,382	-		IAI47_10345	0.14	-1.4
2,190,382	-		IAI47_10345	0.14	-1.1
2,190,419	-		IAI47_10345	0.16	-0.6
2,190,419	-		IAI47_10345	0.16	-0.2
2,190,535	+		IAI47_10345	0.24	-2.0
2,190,536	-		IAI47_10345	0.24	+0.1
2,190,602	-		IAI47_10345	0.28	-1.1
2,190,623	+		IAI47_10345	0.30	-0.8
2,190,623	+		IAI47_10345	0.30	-1.8
2,190,641	-		IAI47_10345	0.31	-2.0
2,190,669	-		IAI47_10345	0.33	+0.1
2,190,733	+		IAI47_10345	0.37	-1.8
2,190,772	+		IAI47_10345	0.40	-2.4
2,190,826	+		IAI47_10345	0.43	-0.8
2,190,949	+		IAI47_10345	0.52	-0.1
2,190,950	-		IAI47_10345	0.52	-1.4
2,190,979	+		IAI47_10345	0.54	-1.0
2,190,979	+		IAI47_10345	0.54	-0.6
2,190,979	+		IAI47_10345	0.54	-2.0
2,190,979	+		IAI47_10345	0.54	-3.4
2,190,979	+		IAI47_10345	0.54	-1.3
2,190,979	+		IAI47_10345	0.54	-0.1
2,190,980	-		IAI47_10345	0.54	-1.4
2,190,980	-		IAI47_10345	0.54	+0.6
2,190,980	-		IAI47_10345	0.54	-0.4
2,190,980	-		IAI47_10345	0.54	-0.5
2,190,980	-		IAI47_10345	0.54	+0.0
2,190,980	-		IAI47_10345	0.54	-0.5
2,191,003	+		IAI47_10345	0.55	-1.4
2,191,010	+		IAI47_10345	0.56	-0.2
2,191,010	+		IAI47_10345	0.56	-1.8
2,191,118	+		IAI47_10345	0.63	+1.0
2,191,119	-		IAI47_10345	0.63	-1.5
2,191,119	-		IAI47_10345	0.63	+1.4
2,191,178	+		IAI47_10345	0.67	+1.5
2,191,288	+		IAI47_10345	0.74	-2.5
2,191,288	+		IAI47_10345	0.74	+0.9
2,191,288	+		IAI47_10345	0.74	-1.3
2,191,432	+		IAI47_10345	0.84	-2.7
2,191,432	+		IAI47_10345	0.84	-1.7
2,191,432	+		IAI47_10345	0.84	-1.7
2,191,432	+		IAI47_10345	0.84	-0.7
2,191,432	+		IAI47_10345	0.84	-1.3
2,191,432	+		IAI47_10345	0.84	-1.8
2,191,433	-		IAI47_10345	0.84	+0.4
2,191,433	-		IAI47_10345	0.84	+0.4
2,191,433	-		IAI47_10345	0.84	-0.1
2,191,437	+		IAI47_10345	0.84	-0.8
2,191,437	+		IAI47_10345	0.84	-1.0
2,191,437	+		IAI47_10345	0.84	-0.8
2,191,437	+		IAI47_10345	0.84	-1.0
2,191,438	-		IAI47_10345	0.84	+2.3
2,191,546	+				-3.2
2,191,546	+				+0.1
2,191,571	+				+0.8
2,191,571	+				+0.3
2,191,571	+				-1.0
2,191,572	-				-1.3
2,191,572	-				-2.0
2,191,572	-				+1.4
2,191,572	-				+0.6
2,191,634	+				-1.3
2,191,635	-				-1.2
2,191,635	-				-0.6
2,191,635	-				+0.8
2,191,636	+				+0.8
2,191,636	+				-0.6
2,191,637	-				+0.3
2,191,637	-				-1.7
2,191,637	-				+0.7
2,191,637	-				-1.9
2,191,637	-				-0.6
2,191,637	-				-0.1
2,191,673	+				-2.0
2,191,673	+				-1.0
2,191,673	+				+1.4
2,191,673	+				-0.0
2,191,673	+				-1.4
2,191,674	-				+0.8
2,191,674	-				-0.9
2,191,674	-				+2.8
2,191,736	-				+2.2
2,191,753	+				+0.0
2,191,753	+				-0.4
2,191,753	+				-0.8
2,191,754	-				+0.8
2,191,754	-				+0.8
2,191,802	-				-1.3
2,191,901	+		IAI47_10350	0.18	+1.2
2,191,902	-		IAI47_10350	0.18	+0.1
2,191,921	-		IAI47_10350	0.20	-0.6
2,191,921	-		IAI47_10350	0.20	-1.0
2,191,921	-		IAI47_10350	0.20	+0.0
2,191,923	+		IAI47_10350	0.20	-2.0
2,191,923	+		IAI47_10350	0.20	+0.6
2,191,923	+		IAI47_10350	0.20	-1.5
2,191,923	+		IAI47_10350	0.20	-1.7
2,191,923	+		IAI47_10350	0.20	-1.1
2,191,924	-		IAI47_10350	0.20	-2.3
2,191,924	-		IAI47_10350	0.20	-1.3
2,191,924	-		IAI47_10350	0.20	-0.4
2,191,924	-		IAI47_10350	0.20	-0.2
2,191,924	-		IAI47_10350	0.20	-0.1
2,191,924	-		IAI47_10350	0.20	-2.6
2,191,924	-		IAI47_10350	0.20	-0.2
2,191,924	-		IAI47_10350	0.20	+0.9
2,191,924	-		IAI47_10350	0.20	-1.4
2,191,924	-		IAI47_10350	0.20	+0.7
2,191,924	-		IAI47_10350	0.20	-1.2
2,191,924	-		IAI47_10350	0.20	-2.0
2,191,924	-		IAI47_10350	0.20	-0.3
2,191,924	-		IAI47_10350	0.20	+2.1
2,191,977	+		IAI47_10350	0.25	+0.1
2,191,977	+		IAI47_10350	0.25	+0.8
2,191,978	-		IAI47_10350	0.25	-0.5
2,191,978	-		IAI47_10350	0.25	+0.5
2,192,004	+		IAI47_10350	0.28	-1.0
2,192,004	+		IAI47_10350	0.28	-0.5
2,192,004	+		IAI47_10350	0.28	+1.5
2,192,005	-		IAI47_10350	0.28	-0.4
2,192,005	-		IAI47_10350	0.28	+1.2
2,192,078	-		IAI47_10350	0.35	-1.9
2,192,092	+		IAI47_10350	0.36	-0.5
2,192,093	-		IAI47_10350	0.37	+0.5
2,192,122	-		IAI47_10350	0.39	-1.3
2,192,143	-		IAI47_10350	0.41	-0.5
2,192,179	+		IAI47_10350	0.45	-1.5
2,192,180	-		IAI47_10350	0.45	-1.6
2,192,227	-		IAI47_10350	0.50	+1.1
2,192,227	-		IAI47_10350	0.50	+0.8
2,192,227	-		IAI47_10350	0.50	-1.0
2,192,313	-		IAI47_10350	0.58	-2.1
2,192,320	+		IAI47_10350	0.59	-0.4
2,192,381	+		IAI47_10350	0.65	-1.3
2,192,381	+		IAI47_10350	0.65	-0.4
2,192,381	+		IAI47_10350	0.65	+1.6
2,192,381	+		IAI47_10350	0.65	+0.2
2,192,381	+		IAI47_10350	0.65	-0.1
2,192,381	+		IAI47_10350	0.65	+0.4
2,192,381	+		IAI47_10350	0.65	-0.0
2,192,381	+		IAI47_10350	0.65	+0.6
2,192,382	-		IAI47_10350	0.65	+0.2
2,192,382	-		IAI47_10350	0.65	+2.4
2,192,382	-		IAI47_10350	0.65	+0.7
2,192,383	+		IAI47_10350	0.65	-0.4
2,192,383	+		IAI47_10350	0.65	-1.5
2,192,383	+		IAI47_10350	0.65	+0.0
2,192,383	+		IAI47_10350	0.65	-1.8
2,192,383	+		IAI47_10350	0.65	-1.7
2,192,384	-		IAI47_10350	0.65	-1.6
2,192,384	-		IAI47_10350	0.65	-1.2
2,192,384	-		IAI47_10350	0.65	+0.0
2,192,384	-		IAI47_10350	0.65	-0.2
2,192,384	-		IAI47_10350	0.65	-0.4
2,192,384	-		IAI47_10350	0.65	-1.4
2,192,517	+		IAI47_10350	0.78	-1.5
2,192,518	-		IAI47_10350	0.78	+0.0
2,192,666	-				-1.2