Strain Fitness in Pantoea sp. MT58 around IAI47_10035

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,124,452	+		IAI47_10030	0.39	+1.2
2,124,473	-		IAI47_10030	0.40	+1.3
2,124,473	-		IAI47_10030	0.40	-1.6
2,124,473	-		IAI47_10030	0.40	-0.5
2,124,675	-		IAI47_10030	0.55	+0.9
2,124,689	+		IAI47_10030	0.56	+0.2
2,124,689	+		IAI47_10030	0.56	+0.8
2,124,689	+		IAI47_10030	0.56	+1.0
2,124,689	+		IAI47_10030	0.56	+0.6
2,124,689	+		IAI47_10030	0.56	-0.8
2,124,689	+		IAI47_10030	0.56	+0.3
2,124,690	-		IAI47_10030	0.57	+0.9
2,124,690	-		IAI47_10030	0.57	+0.8
2,124,690	-		IAI47_10030	0.57	+1.0
2,124,690	-		IAI47_10030	0.57	+0.1
2,124,726	-		IAI47_10030	0.59	-0.5
2,124,726	-		IAI47_10030	0.59	-1.0
2,124,726	-		IAI47_10030	0.59	-0.5
2,124,737	-		IAI47_10030	0.60	-0.4
2,124,746	+		IAI47_10030	0.61	-0.6
2,124,746	+		IAI47_10030	0.61	+0.2
2,124,746	+		IAI47_10030	0.61	-0.7
2,124,746	+		IAI47_10030	0.61	-0.9
2,124,747	-		IAI47_10030	0.61	+0.6
2,124,767	+		IAI47_10030	0.62	+3.2
2,124,767	+		IAI47_10030	0.62	+0.3
2,124,767	+		IAI47_10030	0.62	-1.2
2,124,768	-		IAI47_10030	0.62	+0.6
2,124,799	+		IAI47_10030	0.65	+1.0
2,124,799	+		IAI47_10030	0.65	-0.1
2,124,799	+		IAI47_10030	0.65	+0.2
2,124,802	+		IAI47_10030	0.65	-0.2
2,124,802	+		IAI47_10030	0.65	+0.3
2,124,803	-		IAI47_10030	0.65	-2.2
2,124,803	-		IAI47_10030	0.65	+1.3
2,124,803	-		IAI47_10030	0.65	-0.8
2,124,803	-		IAI47_10030	0.65	-1.7
2,124,803	-		IAI47_10030	0.65	-2.1
2,124,803	-		IAI47_10030	0.65	+0.9
2,124,803	-		IAI47_10030	0.65	+1.8
2,124,803	-		IAI47_10030	0.65	+0.5
2,124,853	+		IAI47_10030	0.69	-0.8
2,124,916	+		IAI47_10030	0.74	+0.9
2,124,916	+		IAI47_10030	0.74	-1.6
2,124,929	+		IAI47_10030	0.75	+0.9
2,124,929	+		IAI47_10030	0.75	-0.0
2,124,929	+		IAI47_10030	0.75	-0.8
2,124,929	+		IAI47_10030	0.75	-2.2
2,124,929	+		IAI47_10030	0.75	+0.3
2,124,930	-		IAI47_10030	0.75	+1.8
2,124,930	-		IAI47_10030	0.75	-1.7
2,124,997	+		IAI47_10030	0.80	-0.3
2,124,997	+		IAI47_10030	0.80	-1.1
2,124,997	+		IAI47_10030	0.80	-0.3
2,124,998	-		IAI47_10030	0.80	+1.5
2,124,998	-		IAI47_10030	0.80	+1.5
2,124,998	-		IAI47_10030	0.80	-0.5
2,125,004	+		IAI47_10030	0.80	-1.4
2,125,005	-		IAI47_10030	0.80	+0.0
2,125,005	-		IAI47_10030	0.80	-0.9
2,125,048	+		IAI47_10030	0.84	-1.4
2,125,048	+		IAI47_10030	0.84	+0.0
2,125,049	-		IAI47_10030	0.84	+0.6
2,125,052	+		IAI47_10030	0.84	-1.6
2,125,052	+		IAI47_10030	0.84	-2.1
2,125,053	-		IAI47_10030	0.84	-1.4
2,125,053	-		IAI47_10030	0.84	+0.6
2,125,053	-		IAI47_10030	0.84	+0.1
2,125,053	-		IAI47_10030	0.84	-2.4
2,125,060	+		IAI47_10030	0.85	-0.0
2,125,060	+		IAI47_10030	0.85	-1.5
2,125,093	+		IAI47_10030	0.87	+0.2
2,125,093	+		IAI47_10030	0.87	-1.1
2,125,093	+		IAI47_10030	0.87	+1.3
2,125,093	+		IAI47_10030	0.87	-0.3
2,125,093	+		IAI47_10030	0.87	-0.5
2,125,094	-		IAI47_10030	0.87	+1.2
2,125,127	+				-1.4
2,125,127	+		IAI47_10030	0.90	+0.2
2,125,128	-		IAI47_10030	0.90	+0.8
2,125,128	-		IAI47_10030	0.90	+1.3
2,125,128	-		IAI47_10030	0.90	-1.1
2,125,130	+		IAI47_10030	0.90	-0.2
2,125,131	-		IAI47_10030	0.90	+0.3
2,125,131	-		IAI47_10030	0.90	-0.8
2,125,131	-		IAI47_10030	0.90	+1.2
2,125,136	+				-2.8
2,125,136	+				-0.7
2,125,136	+				-2.0
2,125,136	+				+0.5
2,125,137	-				-0.7
2,125,138	+				+0.9
2,125,139	-				-1.1
2,125,200	+				-1.1
2,125,200	+				-1.4
2,125,201	-				+0.1
2,125,201	-				-0.1
2,125,267	+				+0.5
2,125,346	+				+2.6
2,125,464	-				+0.9
2,125,512	-		IAI47_10035	0.11	+0.6
2,125,543	+		IAI47_10035	0.13	+1.7
2,125,544	-		IAI47_10035	0.13	+3.3
2,125,550	+		IAI47_10035	0.14	-1.5
2,125,551	-		IAI47_10035	0.14	+2.4
2,125,551	-		IAI47_10035	0.14	+1.2
2,125,553	+		IAI47_10035	0.14	-1.6
2,125,577	-		IAI47_10035	0.16	+0.5
2,125,740	-		IAI47_10035	0.27	-1.0
2,125,776	+		IAI47_10035	0.30	-0.2
2,125,777	-		IAI47_10035	0.30	-1.5
2,125,826	+		IAI47_10035	0.33	+0.1
2,125,826	+		IAI47_10035	0.33	+0.5
2,125,827	-		IAI47_10035	0.33	-2.9
2,125,827	-		IAI47_10035	0.33	+1.3
2,125,827	-		IAI47_10035	0.33	-0.5
2,125,841	+		IAI47_10035	0.34	+0.0
2,125,841	+		IAI47_10035	0.34	+0.6
2,125,842	-		IAI47_10035	0.34	-0.4
2,125,842	-		IAI47_10035	0.34	+0.9
2,125,900	+		IAI47_10035	0.38	-1.2
2,125,901	-		IAI47_10035	0.38	-1.8
2,125,910	+		IAI47_10035	0.39	-0.8
2,125,911	-		IAI47_10035	0.39	+0.3
2,125,911	-		IAI47_10035	0.39	+0.5
2,125,934	+		IAI47_10035	0.41	-0.2
2,125,935	-		IAI47_10035	0.41	-1.2
2,125,945	+		IAI47_10035	0.41	-1.2
2,125,945	+		IAI47_10035	0.41	+1.1
2,125,945	+		IAI47_10035	0.41	-0.8
2,125,945	+		IAI47_10035	0.41	+1.2
2,126,028	+		IAI47_10035	0.47	+0.8
2,126,028	+		IAI47_10035	0.47	+1.5
2,126,028	+		IAI47_10035	0.47	+0.6
2,126,029	-		IAI47_10035	0.47	+0.4
2,126,096	-		IAI47_10035	0.52	+2.8
2,126,107	+		IAI47_10035	0.53	+1.5
2,126,107	+		IAI47_10035	0.53	+0.4
2,126,107	+		IAI47_10035	0.53	+1.9
2,126,107	+		IAI47_10035	0.53	+0.3
2,126,107	+		IAI47_10035	0.53	-1.1
2,126,108	-		IAI47_10035	0.53	+2.1
2,126,108	-		IAI47_10035	0.53	-1.7
2,126,108	-		IAI47_10035	0.53	-1.2
2,126,108	-		IAI47_10035	0.53	+1.5
2,126,108	-		IAI47_10035	0.53	-1.7
2,126,210	+		IAI47_10035	0.60	-0.6
2,126,210	+		IAI47_10035	0.60	+0.5
2,126,210	+		IAI47_10035	0.60	+0.8
2,126,211	-		IAI47_10035	0.60	+0.9
2,126,211	-		IAI47_10035	0.60	-0.7
2,126,211	-		IAI47_10035	0.60	+0.3
2,126,211	-		IAI47_10035	0.60	-0.2
2,126,211	-		IAI47_10035	0.60	+2.3
2,126,211	-		IAI47_10035	0.60	+0.3
2,126,225	+		IAI47_10035	0.61	+2.0
2,126,233	+		IAI47_10035	0.61	+0.8
2,126,233	+		IAI47_10035	0.61	-1.1
2,126,233	+		IAI47_10035	0.61	+0.6
2,126,233	+		IAI47_10035	0.61	-1.7
2,126,233	+		IAI47_10035	0.61	+0.0
2,126,234	-		IAI47_10035	0.62	+0.2
2,126,234	-		IAI47_10035	0.62	+1.2
2,126,244	+		IAI47_10035	0.62	+0.5
2,126,245	-		IAI47_10035	0.62	-0.5
2,126,370	-		IAI47_10035	0.71	-1.4
2,126,419	+		IAI47_10035	0.74	+2.0
2,126,419	+		IAI47_10035	0.74	+0.2
2,126,419	+		IAI47_10035	0.74	-0.7
2,126,419	+		IAI47_10035	0.74	-1.4
2,126,419	+		IAI47_10035	0.74	+1.8
2,126,419	+		IAI47_10035	0.74	+0.3
2,126,419	+		IAI47_10035	0.74	+0.6
2,126,419	+		IAI47_10035	0.74	-0.6
2,126,419	+		IAI47_10035	0.74	+1.3
2,126,419	+		IAI47_10035	0.74	-0.5
2,126,419	+		IAI47_10035	0.74	-1.5
2,126,419	+		IAI47_10035	0.74	-0.9
2,126,419	+		IAI47_10035	0.74	-1.7
2,126,419	+		IAI47_10035	0.74	-1.1
2,126,420	-		IAI47_10035	0.75	+0.7
2,126,420	-		IAI47_10035	0.75	+0.5
2,126,420	-		IAI47_10035	0.75	+1.1
2,126,420	-		IAI47_10035	0.75	+0.5
2,126,420	-		IAI47_10035	0.75	+1.9
2,126,420	-		IAI47_10035	0.75	+0.3
2,126,420	-		IAI47_10035	0.75	+2.7
2,126,420	-		IAI47_10035	0.75	-0.3
2,126,420	-		IAI47_10035	0.75	+0.4
2,126,420	-		IAI47_10035	0.75	-2.1
2,126,420	-		IAI47_10035	0.75	+1.2
2,126,420	-		IAI47_10035	0.75	+0.9
2,126,420	-		IAI47_10035	0.75	-1.8
2,126,474	+		IAI47_10035	0.78	-2.0
2,126,475	-		IAI47_10035	0.78	-0.2
2,126,475	-		IAI47_10035	0.78	+3.1
2,126,475	-		IAI47_10035	0.78	-0.4
2,126,583	+		IAI47_10035	0.86	+1.0
2,126,583	+		IAI47_10035	0.86	-2.1
2,126,583	+		IAI47_10035	0.86	+1.3
2,126,583	+		IAI47_10035	0.86	+0.9
2,126,583	+		IAI47_10035	0.86	+1.7
2,126,583	+		IAI47_10035	0.86	+0.0
2,126,583	+		IAI47_10035	0.86	+2.1
2,126,583	+		IAI47_10035	0.86	+0.9
2,126,584	-		IAI47_10035	0.86	+0.7
2,126,584	-		IAI47_10035	0.86	+1.2
2,126,584	-		IAI47_10035	0.86	+1.6
2,126,584	-		IAI47_10035	0.86	+1.9
2,126,584	-		IAI47_10035	0.86	+1.2
2,126,601	+		IAI47_10035	0.87	-2.9
2,126,602	-		IAI47_10035	0.87	+0.7
2,126,602	-		IAI47_10035	0.87	-0.7
2,126,707	+				+0.9
2,126,707	+				+1.1
2,126,707	+				+0.3
2,126,707	+				-0.2
2,126,707	+				-1.2
2,126,707	+				+0.4
2,126,707	+				+1.6
2,126,707	+				+0.8
2,126,708	-				+0.8
2,126,708	-				+0.1
2,126,708	-				-0.6
2,126,708	-				-1.1
2,126,714	+				+0.5
2,126,714	+				-0.1
2,126,714	+				-2.6
2,126,715	-				+1.0
2,126,715	-				+0.2
2,126,715	-				+0.9
2,126,755	+				+1.8
2,126,755	+				+0.0
2,126,763	+				+0.7
2,126,783	+				-1.4
2,126,783	+				+0.6
2,126,783	+				+1.5
2,126,783	+				-0.9
2,126,784	-				-0.8
2,126,784	-				-1.7
2,126,784	-				+1.9
2,126,784	-				-1.0
2,126,803	+				-2.2
2,126,898	+				+0.2
2,126,931	+				+0.3
2,126,931	+				-2.4
2,126,932	-				-2.3
2,126,977	+				-0.2
2,126,977	+				+1.0
2,126,977	+				+0.0
2,126,977	+				+1.4
2,126,978	-				-1.2
2,127,009	+				-2.2
2,127,010	-				-0.5
2,127,088	-		IAI47_10040	0.15	+0.6
2,127,165	+		IAI47_10040	0.32	+0.6
2,127,165	+		IAI47_10040	0.32	+1.1
2,127,166	-		IAI47_10040	0.32	-0.8
2,127,188	-		IAI47_10040	0.37	-2.1
2,127,234	+		IAI47_10040	0.47	-1.2
2,127,234	+		IAI47_10040	0.47	+0.3
2,127,234	+		IAI47_10040	0.47	+0.5
2,127,234	+		IAI47_10040	0.47	-2.2
2,127,234	+		IAI47_10040	0.47	-1.9
2,127,235	-		IAI47_10040	0.47	-0.1
2,127,235	-		IAI47_10040	0.47	-1.3
2,127,235	-		IAI47_10040	0.47	-1.5
2,127,235	-		IAI47_10040	0.47	-0.5
2,127,243	+		IAI47_10040	0.49	-0.5
2,127,320	-		IAI47_10040	0.66	-0.8
2,127,335	+		IAI47_10040	0.69	+0.8
2,127,336	-		IAI47_10040	0.69	-1.3
2,127,413	+				+2.8
2,127,413	+		IAI47_10040	0.86	-1.2
2,127,414	-		IAI47_10040	0.86	-0.1
2,127,414	-		IAI47_10040	0.86	+0.2
2,127,414	-		IAI47_10040	0.86	-0.0
2,127,414	-		IAI47_10040	0.86	+0.1
2,127,415	+		IAI47_10040	0.87	+0.5
2,127,470	-				-1.2
2,127,480	-				-1.1
2,127,514	+				+0.6
2,127,514	+				-1.0
2,127,514	+				+1.9
2,127,515	-				+1.3
2,127,562	+				-0.7
2,127,562	+				-0.0
2,127,562	+				-1.9
2,127,563	-				-2.7
2,127,563	-				-0.1
2,127,563	-				-1.6
2,127,563	-				+1.5
2,127,599	+				+0.4
2,127,599	+				-0.7
2,127,600	-				+1.8
2,127,600	-				+0.3
2,127,603	+				+1.3
2,127,603	+				+0.0
2,127,603	+				+1.1
2,127,603	+				+0.3
2,127,603	+				-1.8
2,127,603	+				-0.8
2,127,603	+				+0.2
2,127,604	-				+1.5
2,127,604	-				+1.9
2,127,604	-				+1.9
2,127,604	-				-0.7
2,127,604	-				-2.0
2,127,724	+				+0.8
2,127,725	-		IAI47_10045	0.10	-1.8