Strain Fitness in Pantoea sp. MT58 around IAI47_10020

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,118,895	+		IAI47_10015	0.48	-0.1
2,118,896	-		IAI47_10015	0.48	+1.0
2,118,918	-		IAI47_10015	0.50	+1.1
2,118,918	-		IAI47_10015	0.50	+0.5
2,118,918	-		IAI47_10015	0.50	-1.2
2,118,919	+		IAI47_10015	0.50	+1.3
2,118,919	+		IAI47_10015	0.50	+0.3
2,118,919	+		IAI47_10015	0.50	-0.7
2,118,920	-		IAI47_10015	0.50	+2.6
2,118,967	-		IAI47_10015	0.55	+0.1
2,119,000	+		IAI47_10015	0.59	+1.0
2,119,001	-		IAI47_10015	0.59	-0.8
2,119,018	+		IAI47_10015	0.60	+0.5
2,119,019	-		IAI47_10015	0.60	+2.3
2,119,140	-		IAI47_10015	0.73	+0.0
2,119,262	+		IAI47_10015	0.85	+1.2
2,119,263	-		IAI47_10015	0.85	+0.6
2,119,263	-		IAI47_10015	0.85	-0.2
2,119,287	+		IAI47_10015	0.88	-1.7
2,119,288	-		IAI47_10015	0.88	-1.1
2,119,288	-		IAI47_10015	0.88	-1.1
2,119,348	+				-1.4
2,119,348	+				-1.1
2,119,348	+				-1.4
2,119,348	+				-0.2
2,119,348	+				+0.2
2,119,349	-				-3.2
2,119,479	-				-0.8
2,119,498	-				+1.8
2,119,498	-				-0.8
2,119,498	-				+1.9
2,119,602	+				-0.5
2,119,709	+				-0.4
2,119,709	+				-0.5
2,119,709	+				+0.2
2,119,709	+				-1.8
2,119,709	+				-1.1
2,119,710	-				-1.5
2,119,710	-				-0.2
2,119,710	-				+0.9
2,119,787	+				-0.4
2,119,787	+				+1.1
2,119,788	-				-2.3
2,119,788	-				+0.9
2,119,804	-				-1.6
2,119,883	+				-0.4
2,119,883	+				-0.4
2,119,884	-				-1.9
2,119,884	-				+0.2
2,119,884	-				-0.5
2,119,900	-				+0.5
2,120,112	+		IAI47_10020	0.17	+1.1
2,120,151	-		IAI47_10020	0.19	+1.9
2,120,178	-		IAI47_10020	0.20	-0.8
2,120,202	+		IAI47_10020	0.21	+0.7
2,120,203	-		IAI47_10020	0.21	+0.3
2,120,203	-		IAI47_10020	0.21	+0.3
2,120,232	+		IAI47_10020	0.22	-0.2
2,120,232	+		IAI47_10020	0.22	+3.9
2,120,232	+		IAI47_10020	0.22	-0.4
2,120,233	-		IAI47_10020	0.22	-0.6
2,120,243	+		IAI47_10020	0.23	+0.3
2,120,243	+		IAI47_10020	0.23	-1.5
2,120,244	-		IAI47_10020	0.23	-0.5
2,120,244	-		IAI47_10020	0.23	+3.2
2,120,244	-		IAI47_10020	0.23	+1.8
2,120,244	-		IAI47_10020	0.23	-1.4
2,120,250	-		IAI47_10020	0.23	-1.7
2,120,316	+		IAI47_10020	0.26	-0.9
2,120,317	-		IAI47_10020	0.26	+0.6
2,120,317	-		IAI47_10020	0.26	-1.2
2,120,317	-		IAI47_10020	0.26	+0.3
2,120,317	-		IAI47_10020	0.26	+0.3
2,120,379	+		IAI47_10020	0.28	+1.8
2,120,387	+		IAI47_10020	0.29	-0.2
2,120,387	+		IAI47_10020	0.29	-0.2
2,120,388	-		IAI47_10020	0.29	-0.7
2,120,388	-		IAI47_10020	0.29	+2.3
2,120,511	-		IAI47_10020	0.34	-2.2
2,120,523	+		IAI47_10020	0.35	-2.1
2,120,648	+		IAI47_10020	0.40	-1.0
2,120,648	+		IAI47_10020	0.40	+0.6
2,120,649	-		IAI47_10020	0.40	-0.8
2,120,652	+		IAI47_10020	0.40	-0.9
2,120,652	+		IAI47_10020	0.40	-0.5
2,120,652	+		IAI47_10020	0.40	-0.9
2,120,652	+		IAI47_10020	0.40	+0.8
2,120,652	+		IAI47_10020	0.40	+0.5
2,120,652	+		IAI47_10020	0.40	-0.7
2,120,652	+		IAI47_10020	0.40	-1.2
2,120,652	+		IAI47_10020	0.40	-1.2
2,120,652	+		IAI47_10020	0.40	-0.8
2,120,652	+		IAI47_10020	0.40	+1.0
2,120,652	+		IAI47_10020	0.40	+0.3
2,120,652	+		IAI47_10020	0.40	-1.0
2,120,652	+		IAI47_10020	0.40	-2.2
2,120,652	+		IAI47_10020	0.40	+0.2
2,120,653	-		IAI47_10020	0.40	+0.0
2,120,653	-		IAI47_10020	0.40	-2.2
2,120,653	-		IAI47_10020	0.40	-0.3
2,120,653	-		IAI47_10020	0.40	+0.5
2,120,653	-		IAI47_10020	0.40	+1.9
2,120,653	-		IAI47_10020	0.40	+0.3
2,120,653	-		IAI47_10020	0.40	+0.0
2,120,653	-		IAI47_10020	0.40	-0.3
2,120,653	-		IAI47_10020	0.40	-0.6
2,120,653	-		IAI47_10020	0.40	+0.9
2,120,653	-		IAI47_10020	0.40	+0.5
2,120,653	-		IAI47_10020	0.40	+1.2
2,120,653	-		IAI47_10020	0.40	-0.2
2,120,655	+		IAI47_10020	0.40	-1.5
2,120,683	-		IAI47_10020	0.41	+0.5
2,120,683	-		IAI47_10020	0.41	+0.3
2,120,809	+		IAI47_10020	0.47	-0.4
2,120,829	+		IAI47_10020	0.48	-1.7
2,120,843	+		IAI47_10020	0.48	+1.3
2,120,843	+		IAI47_10020	0.48	+0.0
2,120,843	+		IAI47_10020	0.48	+1.3
2,120,843	+		IAI47_10020	0.48	+1.4
2,120,843	+		IAI47_10020	0.48	-0.2
2,120,844	-		IAI47_10020	0.48	-0.5
2,120,844	-		IAI47_10020	0.48	-0.5
2,120,844	-		IAI47_10020	0.48	-0.2
2,120,871	+		IAI47_10020	0.49	-2.3
2,120,878	-		IAI47_10020	0.50	-2.1
2,120,990	+		IAI47_10020	0.54	+0.1
2,120,991	-		IAI47_10020	0.54	-1.5
2,120,991	-		IAI47_10020	0.54	+0.0
2,120,991	-		IAI47_10020	0.54	+0.9
2,120,991	-		IAI47_10020	0.54	-1.0
2,120,991	-		IAI47_10020	0.54	-1.1
2,121,222	+		IAI47_10020	0.64	+1.1
2,121,228	+		IAI47_10020	0.64	-1.9
2,121,228	+		IAI47_10020	0.64	+1.9
2,121,228	+		IAI47_10020	0.64	-0.3
2,121,228	+		IAI47_10020	0.64	+0.4
2,121,228	+		IAI47_10020	0.64	+0.8
2,121,228	+		IAI47_10020	0.64	-1.5
2,121,229	-		IAI47_10020	0.65	-1.1
2,121,229	-		IAI47_10020	0.65	+1.8
2,121,229	-		IAI47_10020	0.65	+1.5
2,121,229	-		IAI47_10020	0.65	-0.6
2,121,293	+		IAI47_10020	0.67	+1.1
2,121,293	+		IAI47_10020	0.67	-0.2
2,121,330	-		IAI47_10020	0.69	+1.8
2,121,330	-		IAI47_10020	0.69	-1.3
2,121,419	+		IAI47_10020	0.73	-0.7
2,121,420	-		IAI47_10020	0.73	+0.5
2,121,420	-		IAI47_10020	0.73	-1.0
2,121,420	-		IAI47_10020	0.73	-0.8
2,121,420	-		IAI47_10020	0.73	+1.3
2,121,461	+		IAI47_10020	0.74	+0.8
2,121,462	-		IAI47_10020	0.74	-0.5
2,121,462	-		IAI47_10020	0.74	-0.7
2,121,462	-		IAI47_10020	0.74	+1.2
2,121,462	-		IAI47_10020	0.74	+1.8
2,121,503	+		IAI47_10020	0.76	+1.9
2,121,503	+		IAI47_10020	0.76	+0.1
2,121,504	-		IAI47_10020	0.76	-1.9
2,121,504	-		IAI47_10020	0.76	-0.0
2,121,590	+		IAI47_10020	0.80	+0.8
2,121,642	+		IAI47_10020	0.82	+0.5
2,121,642	+		IAI47_10020	0.82	+0.2
2,121,642	+		IAI47_10020	0.82	-0.2
2,121,643	-		IAI47_10020	0.82	-0.5
2,121,643	-		IAI47_10020	0.82	-0.3
2,121,643	-		IAI47_10020	0.82	-1.3
2,121,643	-		IAI47_10020	0.82	-0.4
2,121,643	-		IAI47_10020	0.82	-0.5
2,121,643	-		IAI47_10020	0.82	+1.0
2,121,643	-		IAI47_10020	0.82	+0.0
2,121,673	+		IAI47_10020	0.83	-0.5
2,121,674	+		IAI47_10020	0.83	-1.3
2,121,674	+		IAI47_10020	0.83	-1.7
2,121,675	-		IAI47_10020	0.83	-2.1
2,121,675	-		IAI47_10020	0.83	+0.8
2,121,700	+		IAI47_10020	0.84	+1.3
2,121,700	+		IAI47_10020	0.84	-0.5
2,121,701	-		IAI47_10020	0.85	-2.5
2,121,701	-		IAI47_10020	0.85	-0.0
2,121,756	-		IAI47_10020	0.87	+0.2
2,121,893	+				+0.0
2,121,922	+				+1.8
2,121,923	-				+1.6
2,121,923	-				+0.3
2,121,923	-				-0.7
2,121,925	+				-0.5
2,121,925	+				+2.0
2,121,925	+				+0.0
2,121,926	-				-0.6
2,121,926	-				+0.8
2,121,926	-				-1.6
2,121,934	-				+0.4
2,121,934	-				-1.1
2,121,934	-				-0.9
2,121,968	+				-0.1
2,121,968	+				-0.9
2,121,968	+				-1.7
2,121,968	+				-1.1
2,121,968	+				-1.9
2,121,969	-				-0.8
2,122,010	+				+0.8
2,122,010	+				-0.1
2,122,011	-				+1.3
2,122,042	+				-1.0
2,122,043	-				-0.4
2,122,043	-				+1.0
2,122,085	-				+1.2
2,122,093	+				+0.8
2,122,093	+				+1.9
2,122,097	+				+0.1
2,122,097	+				-0.1
2,122,097	+				-0.5
2,122,097	+				+0.8
2,122,097	+				+4.8
2,122,097	+				+1.7
2,122,098	-				+0.3
2,122,098	-				+2.2
2,122,098	-				+2.5
2,122,098	-				+0.5
2,122,098	-				-0.3
2,122,098	-				+1.3
2,122,149	-				+1.1
2,122,152	+				+0.4
2,122,153	-				+0.0
2,122,162	+				+1.1
2,122,163	-				+0.1
2,122,170	+				+0.8
2,122,193	+				+1.9
2,122,212	+				+0.5
2,122,257	-				+1.0
2,122,257	-				+1.0
2,122,258	+				+1.3
2,122,258	+				+0.6
2,122,258	+				-0.8
2,122,259	-				-0.7
2,122,259	-				+0.7
2,122,259	-				+2.0
2,122,259	-				-1.0
2,122,273	+				-1.4
2,122,279	+				+1.0
2,122,280	-				+0.3
2,122,280	-				+1.3
2,122,280	-				+1.1
2,122,280	-				-1.1
2,122,280	-				+2.7
2,122,288	-				-1.5
2,122,291	+				-0.8
2,122,291	+				+1.0
2,122,291	+				-0.2
2,122,292	-				-0.9
2,122,321	+				+0.6
2,122,322	-				-1.5
2,122,322	-				-1.1
2,122,322	-				-0.2
2,122,342	-				+1.1
2,122,343	+				+0.5
2,122,354	+				-0.9
2,122,355	-				-0.7
2,122,355	-				-0.0
2,122,355	-				+0.8
2,122,355	-				+1.3
2,122,355	-				-2.0
2,122,355	-				-0.3
2,122,360	+				+1.5
2,122,360	+				-0.5
2,122,361	-				-2.1
2,122,361	-				+0.3
2,122,361	-				-0.2
2,122,388	+				-0.7
2,122,389	-				-1.7
2,122,394	+				+0.1
2,122,395	-				+3.1
2,122,395	-				-1.0
2,122,421	+				-0.0
2,122,421	+				+0.3
2,122,421	+				-0.2
2,122,449	+				-1.0
2,122,481	+				-1.0
2,122,482	-				+1.2
2,122,516	+				+2.3
2,122,517	-				-2.1
2,122,536	-				+0.0
2,122,574	+				+0.5
2,122,582	-				+0.8
2,122,582	-				-0.9
2,122,585	-				+0.0
2,122,646	-				-0.2
2,122,656	+				+0.5
2,122,734	+				+1.3
2,122,734	+				-0.2
2,122,735	-				+0.6
2,122,735	-				+0.4
2,122,797	+				-1.2
2,122,798	-				-0.3
2,122,826	+				+1.8
2,122,874	+		IAI47_10025	0.14	-2.4
2,122,874	+		IAI47_10025	0.14	+0.8
2,122,875	-		IAI47_10025	0.14	-0.9
2,122,875	-		IAI47_10025	0.14	-0.7
2,122,890	-		IAI47_10025	0.15	+0.8
2,122,890	-		IAI47_10025	0.15	+1.0
2,122,903	+		IAI47_10025	0.17	-0.7
2,123,013	+		IAI47_10025	0.27	+0.0
2,123,061	+		IAI47_10025	0.32	-1.2