Strain Fitness in Pantoea sp. MT58 around IAI47_09470

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,998,640	+		IAI47_09465	0.14	-1.9
1,998,640	+		IAI47_09465	0.14	+0.9
1,998,640	+		IAI47_09465	0.14	-0.7
1,998,640	+		IAI47_09465	0.14	+3.1
1,998,640	+		IAI47_09465	0.14	-1.7
1,998,641	-		IAI47_09465	0.14	-0.6
1,998,641	-		IAI47_09465	0.14	+1.0
1,998,641	-		IAI47_09465	0.14	-1.0
1,998,641	-		IAI47_09465	0.14	-1.7
1,998,641	-		IAI47_09465	0.14	-0.6
1,998,641	-		IAI47_09465	0.14	-0.1
1,998,642	+		IAI47_09465	0.14	+1.8
1,998,642	+		IAI47_09465	0.14	-0.9
1,998,710	+		IAI47_09465	0.21	+3.2
1,998,760	-		IAI47_09465	0.26	+1.0
1,998,840	+		IAI47_09465	0.34	-0.0
1,998,841	-		IAI47_09465	0.34	-2.1
1,998,841	-		IAI47_09465	0.34	+1.1
1,998,841	-		IAI47_09465	0.34	-0.2
1,998,867	+		IAI47_09465	0.37	-0.3
1,998,867	+		IAI47_09465	0.37	+0.8
1,998,995	+		IAI47_09465	0.50	+0.9
1,998,995	+		IAI47_09465	0.50	-0.5
1,998,995	+		IAI47_09465	0.50	-0.3
1,998,995	+		IAI47_09465	0.50	-0.0
1,998,995	+		IAI47_09465	0.50	-2.6
1,998,996	-		IAI47_09465	0.50	-0.8
1,998,996	-		IAI47_09465	0.50	-1.9
1,998,996	-		IAI47_09465	0.50	-1.3
1,999,099	+		IAI47_09465	0.61	-2.9
1,999,099	+		IAI47_09465	0.61	-0.8
1,999,100	-		IAI47_09465	0.61	+1.4
1,999,100	-		IAI47_09465	0.61	-0.2
1,999,100	-		IAI47_09465	0.61	+0.5
1,999,100	-		IAI47_09465	0.61	+1.5
1,999,123	+		IAI47_09465	0.63	+0.9
1,999,123	+		IAI47_09465	0.63	-1.6
1,999,123	+		IAI47_09465	0.63	-2.3
1,999,124	-		IAI47_09465	0.63	+0.2
1,999,124	-		IAI47_09465	0.63	+1.9
1,999,124	-		IAI47_09465	0.63	+2.8
1,999,124	-		IAI47_09465	0.63	-0.5
1,999,303	+		IAI47_09465	0.81	+0.4
1,999,303	+		IAI47_09465	0.81	-0.1
1,999,303	+		IAI47_09465	0.81	+0.6
1,999,303	+		IAI47_09465	0.81	-1.4
1,999,303	+		IAI47_09465	0.81	+0.8
1,999,303	+		IAI47_09465	0.81	-0.1
1,999,303	+		IAI47_09465	0.81	+0.8
1,999,303	+		IAI47_09465	0.81	-1.2
1,999,303	+		IAI47_09465	0.81	+0.6
1,999,303	+		IAI47_09465	0.81	+1.6
1,999,303	+		IAI47_09465	0.81	+0.3
1,999,303	+		IAI47_09465	0.81	-0.2
1,999,303	+		IAI47_09465	0.81	-1.2
1,999,303	+		IAI47_09465	0.81	+0.3
1,999,304	-		IAI47_09465	0.82	-0.7
1,999,304	-		IAI47_09465	0.82	-0.6
1,999,304	-		IAI47_09465	0.82	+0.4
1,999,304	-		IAI47_09465	0.82	-1.1
1,999,304	-		IAI47_09465	0.82	-0.9
1,999,304	-		IAI47_09465	0.82	-1.6
1,999,304	-		IAI47_09465	0.82	-0.7
1,999,304	-		IAI47_09465	0.82	-1.7
1,999,304	-		IAI47_09465	0.82	-0.0
1,999,304	-		IAI47_09465	0.82	+0.0
1,999,304	-		IAI47_09465	0.82	+0.2
1,999,305	+		IAI47_09465	0.82	-3.1
1,999,305	+		IAI47_09465	0.82	+1.7
1,999,305	+		IAI47_09465	0.82	+1.5
1,999,305	+		IAI47_09465	0.82	+0.8
1,999,305	+		IAI47_09465	0.82	-0.9
1,999,305	+		IAI47_09465	0.82	+0.3
1,999,305	+		IAI47_09465	0.82	-0.4
1,999,306	-		IAI47_09465	0.82	-2.7
1,999,306	-		IAI47_09465	0.82	-0.0
1,999,306	-		IAI47_09465	0.82	+1.5
1,999,306	-		IAI47_09465	0.82	-1.4
1,999,306	-		IAI47_09465	0.82	+0.3
1,999,306	-		IAI47_09465	0.82	-0.8
1,999,308	+		IAI47_09465	0.82	+0.2
1,999,308	+		IAI47_09465	0.82	-0.3
1,999,308	+		IAI47_09465	0.82	-0.2
1,999,308	+		IAI47_09465	0.82	-0.3
1,999,308	+		IAI47_09465	0.82	-0.3
1,999,308	+		IAI47_09465	0.82	-0.7
1,999,308	+		IAI47_09465	0.82	+0.5
1,999,308	+		IAI47_09465	0.82	+1.0
1,999,308	+		IAI47_09465	0.82	-0.5
1,999,308	+		IAI47_09465	0.82	+1.5
1,999,308	+		IAI47_09465	0.82	-1.6
1,999,308	+		IAI47_09465	0.82	-0.3
1,999,308	+		IAI47_09465	0.82	-0.8
1,999,308	+		IAI47_09465	0.82	+0.5
1,999,308	+		IAI47_09465	0.82	-0.5
1,999,309	-		IAI47_09465	0.82	+0.8
1,999,309	-		IAI47_09465	0.82	+0.5
1,999,309	-		IAI47_09465	0.82	-1.6
1,999,309	-		IAI47_09465	0.82	-0.3
1,999,309	-		IAI47_09465	0.82	-0.8
1,999,309	-		IAI47_09465	0.82	+0.1
1,999,309	-		IAI47_09465	0.82	+1.0
1,999,309	-		IAI47_09465	0.82	+0.8
1,999,309	-		IAI47_09465	0.82	-0.1
1,999,309	-		IAI47_09465	0.82	+3.9
1,999,309	-		IAI47_09465	0.82	+0.1
1,999,368	+		IAI47_09465	0.88	-1.7
1,999,369	-		IAI47_09465	0.88	+0.0
1,999,403	-				+0.2
1,999,403	-				-0.1
1,999,413	+				+2.7
1,999,414	-				-0.5
1,999,414	-				+1.3
1,999,459	+				-1.7
1,999,460	-				+0.1
1,999,559	+				-0.2
1,999,559	+				-1.6
1,999,560	-				+1.4
1,999,560	-				+1.4
1,999,560	-				-1.0
1,999,662	+				+1.8
1,999,662	+				-1.0
1,999,663	-		IAI47_09470	0.10	-0.2
1,999,670	+		IAI47_09470	0.12	-2.8
1,999,671	-		IAI47_09470	0.13	-2.4
1,999,678	+		IAI47_09470	0.15	-0.6
1,999,678	+		IAI47_09470	0.15	+0.7
1,999,678	+		IAI47_09470	0.15	+3.4
1,999,678	+		IAI47_09470	0.15	-1.8
1,999,678	+		IAI47_09470	0.15	-1.9
1,999,679	-		IAI47_09470	0.15	-0.2
1,999,683	-		IAI47_09470	0.16	-1.6
1,999,683	-		IAI47_09470	0.16	-1.3
1,999,688	+		IAI47_09470	0.18	+1.5
1,999,695	+		IAI47_09470	0.20	-1.8
1,999,695	+		IAI47_09470	0.20	-0.4
1,999,695	+		IAI47_09470	0.20	-1.1
1,999,695	+		IAI47_09470	0.20	-0.4
1,999,704	+		IAI47_09470	0.23	-1.9
1,999,705	-		IAI47_09470	0.23	-2.3
1,999,773	+		IAI47_09470	0.44	+0.4
1,999,773	+		IAI47_09470	0.44	+2.6
1,999,779	+		IAI47_09470	0.46	+1.8
1,999,780	-		IAI47_09470	0.46	+1.4
1,999,823	-		IAI47_09470	0.59	+0.6
1,999,823	-		IAI47_09470	0.59	-1.2
1,999,953	-				-0.2
1,999,954	+				+1.1
1,999,955	-				-1.1
1,999,955	-				-1.4
1,999,987	+				-0.6
1,999,988	-				+0.1
1,999,992	+				+1.0
1,999,992	+				-1.8
1,999,993	-				-0.2
2,000,003	+				+0.5
2,000,004	-				+0.6
2,000,004	-				-1.2
2,000,004	-				+0.5
2,000,004	-				+0.9
2,000,004	-				+0.2
2,000,004	-				-1.2
2,000,004	-				+2.0
2,000,004	-				-1.1
2,000,008	-				+0.1
2,000,142	+		IAI47_09475	0.15	+2.0
2,000,143	-		IAI47_09475	0.15	+0.2
2,000,143	-		IAI47_09475	0.15	+1.0
2,000,143	-		IAI47_09475	0.15	-0.4
2,000,169	+		IAI47_09475	0.18	+0.3
2,000,170	-		IAI47_09475	0.18	-0.3
2,000,170	-		IAI47_09475	0.18	-0.1
2,000,170	-		IAI47_09475	0.18	-0.1
2,000,214	+		IAI47_09475	0.23	+0.4
2,000,214	+		IAI47_09475	0.23	+0.1
2,000,215	-		IAI47_09475	0.23	+0.2
2,000,215	-		IAI47_09475	0.23	+0.2
2,000,215	-		IAI47_09475	0.23	+0.5
2,000,215	-		IAI47_09475	0.23	-0.2
2,000,215	-		IAI47_09475	0.23	-2.2
2,000,215	-		IAI47_09475	0.23	+0.6
2,000,235	-		IAI47_09475	0.25	-0.6
2,000,242	-		IAI47_09475	0.26	-0.6
2,000,316	+		IAI47_09475	0.34	+1.5
2,000,351	+		IAI47_09475	0.37	+2.4
2,000,352	+		IAI47_09475	0.37	+0.4
2,000,352	+		IAI47_09475	0.37	-1.2
2,000,353	-		IAI47_09475	0.38	-2.9
2,000,353	-		IAI47_09475	0.38	+2.6
2,000,353	-		IAI47_09475	0.38	+1.1
2,000,353	-		IAI47_09475	0.38	-1.5
2,000,353	-		IAI47_09475	0.38	-0.2
2,000,353	-		IAI47_09475	0.38	+2.8
2,000,369	+		IAI47_09475	0.39	+1.0
2,000,370	-		IAI47_09475	0.39	+0.0
2,000,370	-		IAI47_09475	0.39	-0.6
2,000,427	+		IAI47_09475	0.45	-0.8
2,000,427	+		IAI47_09475	0.45	-1.8
2,000,427	+		IAI47_09475	0.45	+0.8
2,000,427	+		IAI47_09475	0.45	+1.5
2,000,427	+		IAI47_09475	0.45	-0.5
2,000,428	-		IAI47_09475	0.46	+1.3
2,000,508	+		IAI47_09475	0.54	+0.6
2,000,508	+		IAI47_09475	0.54	-0.1
2,000,509	-		IAI47_09475	0.54	-0.6
2,000,512	-		IAI47_09475	0.54	+1.4
2,000,537	+		IAI47_09475	0.57	-1.1
2,000,583	+		IAI47_09475	0.62	+0.8
2,000,583	+		IAI47_09475	0.62	-1.1
2,000,584	-		IAI47_09475	0.62	+1.4
2,000,615	+		IAI47_09475	0.65	+0.2
2,000,615	+		IAI47_09475	0.65	+0.0
2,000,615	+		IAI47_09475	0.65	-0.6
2,000,616	-		IAI47_09475	0.66	+1.0
2,000,616	-		IAI47_09475	0.66	-0.6
2,000,616	-		IAI47_09475	0.66	+0.0
2,000,616	-		IAI47_09475	0.66	+0.8
2,000,616	-		IAI47_09475	0.66	-0.5
2,000,616	-		IAI47_09475	0.66	-1.2
2,000,629	+		IAI47_09475	0.67	-1.9
2,000,663	+		IAI47_09475	0.71	-0.1
2,000,664	-		IAI47_09475	0.71	+0.0
2,000,664	-		IAI47_09475	0.71	+3.2
2,000,780	+		IAI47_09475	0.83	-0.5
2,000,780	+		IAI47_09475	0.83	-1.1
2,000,780	+		IAI47_09475	0.83	+1.2
2,000,780	+		IAI47_09475	0.83	-2.0
2,000,780	+		IAI47_09475	0.83	+1.5
2,000,781	-		IAI47_09475	0.83	+0.4
2,000,781	-		IAI47_09475	0.83	-1.5
2,000,781	-		IAI47_09475	0.83	-1.0
2,000,781	-		IAI47_09475	0.83	+0.5
2,000,781	-		IAI47_09475	0.83	+0.6
2,000,781	-		IAI47_09475	0.83	+0.3
2,000,781	-		IAI47_09475	0.83	+0.9
2,000,835	+		IAI47_09475	0.89	+0.5
2,000,836	-		IAI47_09475	0.89	+0.6
2,000,838	+		IAI47_09475	0.89	+0.7
2,000,838	+		IAI47_09475	0.89	-0.7
2,000,839	-		IAI47_09475	0.89	+1.0
2,000,865	+				+1.4
2,000,865	+				+1.4
2,000,866	-				+0.9
2,000,889	+				-1.0
2,000,900	+				+0.9
2,000,900	+				-1.9
2,000,929	-				+1.4