Strain Fitness in Pantoea sp. MT58 around IAI47_08810

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,860,647	+		IAI47_08795	0.85	-2.5
1,860,821	+				+0.2
1,860,821	+				+1.0
1,860,822	-				+1.0
1,860,823	+				-0.9
1,860,823	+				+0.7
1,860,823	+				+0.7
1,860,823	+				-0.6
1,860,823	+				+2.3
1,860,824	-				+0.5
1,860,824	-				+1.2
1,860,824	-				-0.9
1,860,873	+				-1.3
1,860,873	+				+1.6
1,860,873	+				-0.7
1,860,873	+				+1.1
1,860,874	-				-0.9
1,860,874	-				-1.3
1,860,895	-				+0.4
1,860,895	-				+1.3
1,860,918	+				+2.8
1,860,919	-				-0.7
1,860,919	-				-0.2
1,860,919	-				-1.3
1,860,919	-				+0.1
1,860,934	-				+0.3
1,860,967	+				-0.5
1,860,968	-				+0.7
1,861,018	+		IAI47_08800	0.29	-0.6
1,861,019	-		IAI47_08800	0.29	-0.0
1,861,019	-		IAI47_08800	0.29	+0.5
1,861,019	-		IAI47_08800	0.29	+1.2
1,861,019	-		IAI47_08800	0.29	+0.3
1,861,019	-		IAI47_08800	0.29	+0.2
1,861,109	-		IAI47_08800	0.75	-0.6
1,861,109	-		IAI47_08800	0.75	+4.4
1,861,109	-		IAI47_08800	0.75	-1.9
1,861,154	+				-0.0
1,861,170	+				+0.2
1,861,203	+				-1.3
1,861,203	+				-2.1
1,861,214	+		IAI47_08805	0.13	-0.6
1,861,214	+		IAI47_08805	0.13	-0.7
1,861,215	-		IAI47_08805	0.13	-0.7
1,861,215	-		IAI47_08805	0.13	+1.3
1,861,235	-		IAI47_08805	0.19	-1.8
1,861,235	-		IAI47_08805	0.19	-2.8
1,861,306	+		IAI47_08805	0.40	-0.7
1,861,307	-		IAI47_08805	0.40	+1.4
1,861,307	-		IAI47_08805	0.40	+0.4
1,861,307	-		IAI47_08805	0.40	-1.5
1,861,310	+		IAI47_08805	0.41	-0.9
1,861,311	-		IAI47_08805	0.41	-0.1
1,861,345	+		IAI47_08805	0.51	-0.7
1,861,346	-		IAI47_08805	0.51	-0.2
1,861,346	-		IAI47_08805	0.51	-0.6
1,861,443	+		IAI47_08805	0.79	-0.4
1,861,443	+		IAI47_08805	0.79	+0.9
1,861,444	-		IAI47_08805	0.80	-1.6
1,861,444	-		IAI47_08805	0.80	+1.2
1,861,444	-		IAI47_08805	0.80	-0.2
1,861,444	-		IAI47_08805	0.80	-0.3
1,861,446	+		IAI47_08805	0.80	+0.7
1,861,446	+		IAI47_08805	0.80	-0.1
1,861,446	+		IAI47_08805	0.80	-0.2
1,861,447	-		IAI47_08805	0.81	-1.7
1,861,447	-		IAI47_08805	0.81	+1.8
1,861,447	-		IAI47_08805	0.81	+0.4
1,861,459	+		IAI47_08805	0.84	+1.4
1,861,459	+		IAI47_08805	0.84	-0.9
1,861,460	-		IAI47_08805	0.84	-1.3
1,861,480	+				+0.9
1,861,480	+				-0.1
1,861,480	+				+0.5
1,861,480	+				+1.0
1,861,480	+				+1.0
1,861,480	+				-1.4
1,861,480	+				-0.4
1,861,480	+				-0.6
1,861,480	+				-1.5
1,861,480	+				-0.1
1,861,481	-				+0.9
1,861,481	-				-0.9
1,861,481	-				+0.9
1,861,481	-				-1.9
1,861,481	-				+0.7
1,861,481	-				-1.1
1,861,481	-				+0.3
1,861,481	-				+1.1
1,861,507	+				+1.6
1,861,508	-				+0.9
1,861,508	-				+1.7
1,861,508	-				+2.4
1,861,508	-				+0.4
1,861,508	-				+2.3
1,861,508	-				+0.6
1,861,529	+				+0.6
1,861,529	+				+0.4
1,861,529	+				+0.1
1,861,530	-				+0.3
1,861,540	+				-0.9
1,861,540	+				+1.1
1,861,540	+				-0.7
1,861,541	-				-0.3
1,861,560	-				-0.7
1,861,575	+				-1.3
1,861,575	+				-0.3
1,861,575	+				+1.3
1,861,576	-				+0.6
1,861,576	-				-1.6
1,861,576	-				-1.5
1,861,582	+				+0.1
1,861,698	-		IAI47_08810	0.33	+1.0
1,861,712	+		IAI47_08810	0.36	+2.3
1,861,712	+		IAI47_08810	0.36	+1.7
1,861,712	+		IAI47_08810	0.36	+0.1
1,861,712	+		IAI47_08810	0.36	-0.8
1,861,713	-		IAI47_08810	0.37	+0.7
1,861,713	-		IAI47_08810	0.37	+1.8
1,861,758	-		IAI47_08810	0.49	+1.4
1,861,758	-		IAI47_08810	0.49	-1.1
1,861,758	-		IAI47_08810	0.49	-1.7
1,861,799	+		IAI47_08810	0.61	+1.5
1,861,799	+		IAI47_08810	0.61	+1.1
1,861,799	+		IAI47_08810	0.61	-1.7
1,861,800	-		IAI47_08810	0.61	+1.1
1,861,800	-		IAI47_08810	0.61	-0.2
1,861,800	-		IAI47_08810	0.61	-1.3
1,861,877	+		IAI47_08810	0.82	+0.9
1,861,877	+		IAI47_08810	0.82	+2.0
1,861,877	+		IAI47_08810	0.82	-0.4
1,861,878	-		IAI47_08810	0.82	-0.6
1,861,878	-		IAI47_08810	0.82	+2.2
1,861,905	+				+0.4
1,861,906	-				+0.7
1,861,906	-				-2.4
1,861,933	+				+2.0
1,861,933	+				+0.4
1,861,933	+				+0.4
1,861,934	-				+0.4
1,861,934	-				-1.6
1,861,945	+				+2.0
1,861,945	+				-1.4
1,861,945	+				+0.5
1,861,945	+				-3.4
1,861,945	+				-1.4
1,861,945	+				-0.4
1,861,946	-				+1.6
1,861,946	-				-2.8
1,861,946	-				+0.1
1,861,974	+				+1.2
1,862,009	+				+0.4
1,862,009	+				+0.4
1,862,009	+				-0.4
1,862,010	-				-0.7
1,862,010	-				+0.9
1,862,010	-				-1.1
1,862,033	+				-0.6
1,862,034	-				-1.4
1,862,055	+				+0.6
1,862,056	-				-0.8
1,862,056	-				+1.9
1,862,056	-				-1.0
1,862,056	-				+1.3
1,862,065	+				-0.3
1,862,065	+				-1.9
1,862,065	+				+1.1
1,862,072	+				+0.1
1,862,072	+				-0.6
1,862,073	-				-0.1
1,862,073	-				-1.0
1,862,074	+				-1.3
1,862,075	-				-0.0
1,862,075	-				+0.8
1,862,091	+				+1.5
1,862,118	-				+0.0
1,862,139	+				+0.4
1,862,197	+				-0.1
1,862,197	+				+2.0
1,862,238	+				+1.0
1,862,240	+				+0.3
1,862,276	+				-1.7
1,862,277	-				+1.4
1,862,277	-				-0.5
1,862,290	+				+2.3
1,862,297	+				-0.9
1,862,297	+				-1.4
1,862,298	-				-0.5
1,862,310	+		IAI47_08815	0.17	-0.4
1,862,338	+		IAI47_08815	0.33	-0.0
1,862,338	+		IAI47_08815	0.33	-0.4
1,862,338	+		IAI47_08815	0.33	-1.4
1,862,339	-		IAI47_08815	0.34	+0.2
1,862,345	-		IAI47_08815	0.38	-0.4
1,862,377	+		IAI47_08815	0.57	-0.4
1,862,377	+		IAI47_08815	0.57	-1.0
1,862,377	+		IAI47_08815	0.57	+0.1
1,862,377	+		IAI47_08815	0.57	-1.4
1,862,378	-		IAI47_08815	0.57	+0.4
1,862,378	-		IAI47_08815	0.57	+1.2
1,862,378	-		IAI47_08815	0.57	+0.1
1,862,393	-		IAI47_08815	0.66	+0.1
1,862,435	+				+1.8
1,862,435	+				-1.7
1,862,436	-				-0.1
1,862,436	-				+1.2
1,862,447	+				-0.7
1,862,447	+				-1.0
1,862,447	+				+0.8
1,862,448	-				-1.9
1,862,480	+				+2.4
1,862,541	+				-1.4
1,862,541	+				+2.4
1,862,541	+				+2.1
1,862,541	+				-0.4
1,862,541	+				-0.5
1,862,541	+				+1.0
1,862,541	+				+0.4
1,862,541	+				-0.6
1,862,541	+				-0.3
1,862,541	+				-0.1
1,862,545	+				+3.8
1,862,545	+				+1.1
1,862,545	+				+0.7
1,862,545	+				+1.3
1,862,545	+				+0.5
1,862,545	+				-2.4
1,862,545	+				+0.7
1,862,545	+				+1.8
1,862,545	+				-0.1
1,862,546	-				+0.8
1,862,546	-				+2.1
1,862,546	-				+0.2
1,862,560	+				-2.4
1,862,560	+				+1.4
1,862,561	-				+0.3
1,862,561	-				+0.1
1,862,561	-				-1.5
1,862,561	-				-0.1
1,862,571	+				+0.5
1,862,572	+				-0.6
1,862,572	+				+1.2
1,862,573	-				+1.4
1,862,573	-				+0.2
1,862,573	-				-0.8
1,862,573	-				-2.1
1,862,573	-				+0.8
1,862,576	+				-0.9
1,862,588	+				-0.9
1,862,588	+				-1.9
1,862,588	+				+2.1
1,862,588	+				+2.2
1,862,589	-				-1.4
1,862,592	+				+0.5
1,862,592	+				+2.6
1,862,592	+				+0.9
1,862,592	+				+0.3
1,862,592	+				+0.5
1,862,593	-				-0.0
1,862,611	+				+0.1
1,862,611	+				-1.0
1,862,612	-				-0.1
1,862,644	+				+0.1
1,862,684	+				+2.3
1,862,685	-				+0.5
1,862,685	-				-1.5
1,862,698	+				-1.3
1,862,698	+				+2.6
1,862,699	-				+2.6
1,862,729	+				-2.0
1,862,729	+				+1.4
1,862,729	+				+0.1
1,862,729	+				+0.4
1,862,730	-				-0.8
1,862,730	-				-0.1
1,862,730	-				+0.6
1,862,730	-				-0.4
1,862,730	-				-1.0
1,862,789	+				+0.0
1,862,790	-				+0.4
1,862,790	-				+0.9
1,862,903	+				+1.3
1,862,933	+				-0.7
1,862,933	+				+1.4
1,862,933	+				+1.3
1,862,933	+				-0.4
1,862,933	+				+0.3