Strain Fitness in Pantoea sp. MT58 around IAI47_06595

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,371,987	+		IAI47_06590	0.44	-0.5
1,372,005	+		IAI47_06590	0.45	-0.2
1,372,115	+		IAI47_06590	0.54	-2.1
1,372,115	+		IAI47_06590	0.54	-0.8
1,372,115	+		IAI47_06590	0.54	+0.4
1,372,115	+		IAI47_06590	0.54	-0.2
1,372,115	+		IAI47_06590	0.54	+1.3
1,372,115	+		IAI47_06590	0.54	+1.3
1,372,116	-		IAI47_06590	0.54	+1.8
1,372,116	-		IAI47_06590	0.54	+2.0
1,372,116	-		IAI47_06590	0.54	+0.2
1,372,116	-		IAI47_06590	0.54	+1.1
1,372,182	-		IAI47_06590	0.60	-1.0
1,372,182	-		IAI47_06590	0.60	-0.0
1,372,182	-		IAI47_06590	0.60	-1.2
1,372,182	-		IAI47_06590	0.60	+0.4
1,372,182	-		IAI47_06590	0.60	-2.7
1,372,223	+		IAI47_06590	0.63	+1.5
1,372,223	+		IAI47_06590	0.63	-1.5
1,372,223	+		IAI47_06590	0.63	-0.0
1,372,223	+		IAI47_06590	0.63	-1.5
1,372,223	+		IAI47_06590	0.63	-0.8
1,372,224	-		IAI47_06590	0.63	+0.1
1,372,224	-		IAI47_06590	0.63	-1.3
1,372,224	-		IAI47_06590	0.63	+1.1
1,372,224	-		IAI47_06590	0.63	+2.7
1,372,224	-		IAI47_06590	0.63	+0.8
1,372,224	-		IAI47_06590	0.63	-0.6
1,372,268	-		IAI47_06590	0.67	+0.6
1,372,326	+		IAI47_06590	0.72	-1.5
1,372,326	+		IAI47_06590	0.72	+1.7
1,372,326	+		IAI47_06590	0.72	-2.5
1,372,326	+		IAI47_06590	0.72	-0.8
1,372,327	-		IAI47_06590	0.72	-0.2
1,372,327	-		IAI47_06590	0.72	-2.5
1,372,327	-		IAI47_06590	0.72	+1.5
1,372,628	+				+3.7
1,372,628	+				+0.1
1,372,628	+				+0.9
1,372,628	+				+1.4
1,372,628	+				+0.7
1,372,628	+				+1.5
1,372,628	+				+0.8
1,372,628	+				+1.0
1,372,629	-				-0.0
1,372,703	+				+1.0
1,372,703	+				+0.5
1,372,704	-				-0.5
1,372,767	+				+2.0
1,372,798	+				-1.4
1,372,798	+				+0.5
1,372,798	+				+0.4
1,372,798	+				+0.5
1,372,802	+				-2.4
1,372,802	+				+1.3
1,372,802	+				+2.0
1,372,802	+				+0.6
1,372,802	+				+0.1
1,372,802	+				+1.2
1,372,802	+				+1.3
1,372,802	+				+1.2
1,372,802	+				+0.5
1,372,802	+				-1.3
1,372,802	+				+2.0
1,372,802	+				+1.6
1,372,802	+				+0.8
1,372,803	-				+0.9
1,372,803	-				-0.4
1,372,803	-				+0.8
1,372,803	-				+0.5
1,372,803	-				-2.2
1,372,803	-				+0.6
1,372,803	-				-0.4
1,372,803	-				-0.5
1,372,803	-				-0.7
1,372,803	-				+0.7
1,372,803	-				-1.7
1,372,803	-				+0.6
1,372,803	-				+1.0
1,372,803	-				+1.7
1,372,803	-				-2.3
1,372,803	-				-0.4
1,372,803	-				-0.0
1,372,803	-				-1.0
1,372,803	-				-1.1
1,372,803	-				+4.5
1,372,803	-				-0.2
1,372,803	-				-0.9
1,372,804	+				+0.7
1,372,804	+				-0.9
1,372,804	+				+1.3
1,372,805	-				-1.4
1,372,805	-				+1.5
1,372,821	+				+1.1
1,372,821	+				-0.6
1,372,822	-				-0.6
1,372,822	-				-1.4
1,372,822	-				-1.3
1,372,822	-				-3.4
1,372,822	-				+1.0
1,372,923	+				+0.6
1,372,923	+				+2.0
1,372,923	+				+1.5
1,372,924	-				-0.5
1,372,942	+				-1.8
1,372,942	+				-1.1
1,372,942	+				-0.7
1,372,942	+				-0.0
1,372,943	-				-2.3
1,372,943	-				+0.1
1,372,943	-				+0.7
1,372,947	+				+4.3
1,372,947	+				+0.0
1,372,947	+				-1.5
1,372,947	+				-0.5
1,372,947	+				+0.3
1,372,948	-				+0.2
1,372,948	-				-1.4
1,372,948	-				-0.9
1,372,948	-				-1.3
1,372,948	-				+0.5
1,373,114	+		IAI47_06595	0.52	-0.5
1,373,114	+		IAI47_06595	0.52	-2.1
1,373,115	-		IAI47_06595	0.52	-0.3
1,373,115	-		IAI47_06595	0.52	-0.6
1,373,115	-		IAI47_06595	0.52	+0.1
1,373,211	+		IAI47_06595	0.82	-1.8
1,373,212	-		IAI47_06595	0.82	-0.3
1,373,212	-		IAI47_06595	0.82	-1.8
1,373,244	-				-0.7
1,373,256	+				-1.3
1,373,256	+				+1.0
1,373,266	+				+1.4
1,373,266	+				-2.5
1,373,266	+				-0.8
1,373,266	+				+0.6
1,373,267	-				+3.1
1,373,267	-				+3.9
1,373,285	+				-1.2
1,373,286	-				+0.4
1,373,298	+				+0.4
1,373,298	+				-2.2
1,373,298	+				-0.4
1,373,298	+				+0.1
1,373,299	-				+0.2
1,373,299	-				-0.2
1,373,299	-				+0.2
1,373,299	-				-2.3
1,373,299	-				-2.1
1,373,371	+				+2.3
1,373,416	+		IAI47_06600	0.10	-0.3
1,373,416	+		IAI47_06600	0.10	-1.4
1,373,417	-		IAI47_06600	0.10	-1.6
1,373,424	+		IAI47_06600	0.11	-1.8
1,373,554	+		IAI47_06600	0.19	+1.9
1,373,554	+		IAI47_06600	0.19	+0.7
1,373,554	+		IAI47_06600	0.19	+0.2
1,373,555	-		IAI47_06600	0.19	-0.6
1,373,555	-		IAI47_06600	0.19	-0.0
1,373,560	+		IAI47_06600	0.19	+1.2
1,373,560	+		IAI47_06600	0.19	-0.3
1,373,560	+		IAI47_06600	0.19	-2.4
1,373,560	+		IAI47_06600	0.19	+0.1
1,373,560	+		IAI47_06600	0.19	-1.4
1,373,560	+		IAI47_06600	0.19	-0.9
1,373,560	+		IAI47_06600	0.19	-0.0
1,373,560	+		IAI47_06600	0.19	+0.3
1,373,560	+		IAI47_06600	0.19	+1.7
1,373,560	+		IAI47_06600	0.19	+1.4
1,373,561	-		IAI47_06600	0.19	+0.8
1,373,561	-		IAI47_06600	0.19	-1.0
1,373,561	-		IAI47_06600	0.19	+0.4
1,373,645	-		IAI47_06600	0.24	+1.0
1,373,685	+		IAI47_06600	0.27	-1.5
1,373,685	+		IAI47_06600	0.27	-1.4
1,373,686	-		IAI47_06600	0.27	+1.2
1,373,686	-		IAI47_06600	0.27	+0.2
1,373,686	-		IAI47_06600	0.27	+1.3
1,373,687	+		IAI47_06600	0.27	+0.5
1,373,688	-		IAI47_06600	0.27	+1.0
1,373,707	+		IAI47_06600	0.28	+1.0
1,373,707	+		IAI47_06600	0.28	+1.3
1,373,708	-		IAI47_06600	0.28	-0.2
1,373,746	+		IAI47_06600	0.31	+1.5
1,373,746	+		IAI47_06600	0.31	-0.3
1,373,746	+		IAI47_06600	0.31	-0.8
1,373,746	+		IAI47_06600	0.31	-1.9
1,373,747	-		IAI47_06600	0.31	+1.1
1,373,770	+		IAI47_06600	0.32	-1.3
1,373,770	+		IAI47_06600	0.32	-2.5
1,373,771	-		IAI47_06600	0.32	+0.4
1,373,888	-		IAI47_06600	0.39	-0.4
1,374,004	+		IAI47_06600	0.47	+0.3
1,374,004	+		IAI47_06600	0.47	+0.1
1,374,005	-		IAI47_06600	0.47	+0.1
1,374,105	+		IAI47_06600	0.53	-1.0
1,374,105	+		IAI47_06600	0.53	+0.7
1,374,105	+		IAI47_06600	0.53	+1.5
1,374,106	-		IAI47_06600	0.53	-1.8
1,374,184	+		IAI47_06600	0.58	-2.4
1,374,184	+		IAI47_06600	0.58	+1.4
1,374,184	+		IAI47_06600	0.58	-0.8
1,374,184	+		IAI47_06600	0.58	+0.4
1,374,185	-		IAI47_06600	0.58	-2.2
1,374,185	-		IAI47_06600	0.58	+1.5
1,374,185	-		IAI47_06600	0.58	-1.0
1,374,185	-		IAI47_06600	0.58	-1.5
1,374,185	-		IAI47_06600	0.58	+1.8
1,374,205	+		IAI47_06600	0.59	+0.2
1,374,205	+		IAI47_06600	0.59	-1.2
1,374,205	+		IAI47_06600	0.59	+0.6
1,374,206	-		IAI47_06600	0.59	-1.6
1,374,206	-		IAI47_06600	0.59	+1.0
1,374,215	-		IAI47_06600	0.60	-1.3