Strain Fitness in Pantoea sp. MT58 around IAI47_06320

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,283,003	+		IAI47_06310	0.78	-0.5
1,283,004	-		IAI47_06310	0.79	+1.6
1,283,035	+		IAI47_06310	0.83	+1.1
1,283,036	-		IAI47_06310	0.83	+1.0
1,283,036	-		IAI47_06310	0.83	-2.2
1,283,036	-		IAI47_06310	0.83	-0.0
1,283,065	+		IAI47_06310	0.88	-1.2
1,283,065	+		IAI47_06310	0.88	-1.1
1,283,073	+		IAI47_06310	0.89	-0.9
1,283,073	+		IAI47_06310	0.89	+0.1
1,283,073	+		IAI47_06310	0.89	+1.5
1,283,073	+		IAI47_06310	0.89	-1.2
1,283,073	+		IAI47_06310	0.89	-0.2
1,283,073	+		IAI47_06310	0.89	-0.0
1,283,073	+		IAI47_06310	0.89	-0.1
1,283,074	-		IAI47_06310	0.89	+0.7
1,283,074	-		IAI47_06310	0.89	-0.1
1,283,074	-		IAI47_06310	0.89	+1.4
1,283,074	-		IAI47_06310	0.89	-2.4
1,283,104	+				+0.2
1,283,105	-				-0.8
1,283,105	-				-0.5
1,283,105	-				+0.8
1,283,139	+				+0.6
1,283,167	+				-1.7
1,283,167	+				-0.0
1,283,168	-				-1.1
1,283,168	-				-0.9
1,283,175	+				-1.5
1,283,175	+				+0.8
1,283,175	+				+0.1
1,283,175	+				+0.1
1,283,175	+				+0.5
1,283,176	-				-0.4
1,283,180	+				+0.4
1,283,180	+				-0.8
1,283,181	-				+4.0
1,283,190	-				+1.6
1,283,195	+				+0.5
1,283,196	-				-1.4
1,283,225	+				+0.2
1,283,226	-				-1.5
1,283,291	+				-2.0
1,283,373	+		IAI47_06315	0.23	+0.1
1,283,373	+		IAI47_06315	0.23	-0.9
1,283,373	+		IAI47_06315	0.23	-0.0
1,283,373	+		IAI47_06315	0.23	+0.2
1,283,373	+		IAI47_06315	0.23	-1.0
1,283,373	+		IAI47_06315	0.23	-0.8
1,283,373	+		IAI47_06315	0.23	+0.6
1,283,373	+		IAI47_06315	0.23	-0.5
1,283,373	+		IAI47_06315	0.23	+0.3
1,283,373	+		IAI47_06315	0.23	-2.3
1,283,374	-		IAI47_06315	0.24	-1.5
1,283,374	-		IAI47_06315	0.24	+0.6
1,283,374	-		IAI47_06315	0.24	-0.7
1,283,374	-		IAI47_06315	0.24	+1.2
1,283,374	-		IAI47_06315	0.24	-1.1
1,283,374	-		IAI47_06315	0.24	+0.2
1,283,374	-		IAI47_06315	0.24	+0.1
1,283,374	-		IAI47_06315	0.24	+0.1
1,283,374	-		IAI47_06315	0.24	-0.7
1,283,374	-		IAI47_06315	0.24	-1.8
1,283,375	+		IAI47_06315	0.24	-1.3
1,283,375	+		IAI47_06315	0.24	-0.3
1,283,375	+		IAI47_06315	0.24	-1.9
1,283,375	+		IAI47_06315	0.24	-0.1
1,283,393	+		IAI47_06315	0.27	-0.7
1,283,400	-		IAI47_06315	0.29	-0.7
1,283,411	-		IAI47_06315	0.31	-1.6
1,283,428	+		IAI47_06315	0.34	-0.8
1,283,492	+		IAI47_06315	0.46	+1.6
1,283,492	+		IAI47_06315	0.46	-1.1
1,283,492	+		IAI47_06315	0.46	-1.1
1,283,492	+		IAI47_06315	0.46	+1.5
1,283,492	+		IAI47_06315	0.46	-1.1
1,283,492	+		IAI47_06315	0.46	+0.4
1,283,493	-		IAI47_06315	0.46	+1.1
1,283,493	-		IAI47_06315	0.46	-0.5
1,283,493	-		IAI47_06315	0.46	-0.1
1,283,493	-		IAI47_06315	0.46	-2.1
1,283,530	+		IAI47_06315	0.53	+0.2
1,283,530	+		IAI47_06315	0.53	-0.7
1,283,530	+		IAI47_06315	0.53	-1.1
1,283,531	-		IAI47_06315	0.54	-0.9
1,283,531	-		IAI47_06315	0.54	-0.9
1,283,571	+		IAI47_06315	0.61	+1.8
1,283,666	+		IAI47_06315	0.79	-1.8
1,283,666	+		IAI47_06315	0.79	-1.6
1,283,666	+		IAI47_06315	0.79	+0.2
1,283,666	+		IAI47_06315	0.79	+0.6
1,283,667	-		IAI47_06315	0.79	-2.1
1,283,667	-		IAI47_06315	0.79	+0.3
1,283,667	-		IAI47_06315	0.79	+0.1
1,283,667	-		IAI47_06315	0.79	-0.2
1,283,712	-		IAI47_06315	0.88	-0.6
1,283,790	+				+1.6
1,283,790	+				+0.7
1,283,811	-				+0.3
1,283,811	-				-1.0
1,283,875	+				-2.1
1,283,886	+				+2.9
1,283,886	+				-1.6
1,283,886	+				+1.3
1,283,887	-				-1.2
1,283,911	+				-1.4
1,283,929	+				-1.8
1,283,930	-				-1.7
1,283,930	-				+0.2
1,283,931	+				-1.4
1,283,931	+				-1.3
1,283,932	-				-0.3
1,283,932	-				-2.9
1,283,932	-				-0.6
1,283,981	-				+0.2
1,283,981	-				-1.6
1,283,986	+				-0.1
1,284,042	+				-0.1
1,284,043	-				-2.0
1,284,043	-				+0.9
1,284,076	+				+0.5
1,284,077	-				-0.3
1,284,153	+		IAI47_06320	0.13	+1.1
1,284,154	-		IAI47_06320	0.13	-0.9
1,284,235	+		IAI47_06320	0.16	-0.6
1,284,257	-		IAI47_06320	0.17	-2.4
1,284,261	+		IAI47_06320	0.18	-2.6
1,284,262	-		IAI47_06320	0.18	-1.9
1,284,262	-		IAI47_06320	0.18	-2.5
1,284,290	-		IAI47_06320	0.19	-0.9
1,284,406	+		IAI47_06320	0.24	-0.8
1,284,407	-		IAI47_06320	0.25	+0.2
1,284,407	-		IAI47_06320	0.25	-1.3
1,284,557	-		IAI47_06320	0.32	+0.5
1,284,557	-		IAI47_06320	0.32	-1.6
1,284,604	+		IAI47_06320	0.34	-1.2
1,284,630	+		IAI47_06320	0.35	-1.3
1,284,642	-		IAI47_06320	0.36	-1.0
1,284,642	-		IAI47_06320	0.36	-1.3
1,284,681	-		IAI47_06320	0.37	-0.8
1,284,766	+		IAI47_06320	0.41	+1.5
1,284,767	-		IAI47_06320	0.41	-1.9
1,284,767	-		IAI47_06320	0.41	+2.5
1,284,767	-		IAI47_06320	0.41	-0.5
1,284,779	-		IAI47_06320	0.42	-0.0
1,284,830	-		IAI47_06320	0.44	+0.9
1,284,925	+		IAI47_06320	0.49	-1.4
1,284,926	-		IAI47_06320	0.49	-2.6
1,284,926	-		IAI47_06320	0.49	-2.3
1,284,926	-		IAI47_06320	0.49	-1.2
1,284,926	-		IAI47_06320	0.49	-1.8
1,284,930	+		IAI47_06320	0.49	-0.6
1,284,930	+		IAI47_06320	0.49	-0.6
1,284,930	+		IAI47_06320	0.49	-0.8
1,284,930	+		IAI47_06320	0.49	-1.2
1,284,931	-		IAI47_06320	0.49	-1.3
1,284,943	-		IAI47_06320	0.50	-1.1
1,284,943	-		IAI47_06320	0.50	-1.6
1,284,994	+		IAI47_06320	0.52	-1.3
1,284,994	+		IAI47_06320	0.52	-1.4
1,284,995	-		IAI47_06320	0.52	-0.3
1,285,107	+		IAI47_06320	0.57	-2.1
1,285,108	-		IAI47_06320	0.57	-1.6
1,285,108	-		IAI47_06320	0.57	-0.5
1,285,331	-		IAI47_06320	0.68	-1.4
1,285,331	-		IAI47_06320	0.68	-0.5
1,285,481	-		IAI47_06320	0.75	-2.1
1,285,524	-		IAI47_06320	0.77	-0.3
1,285,524	-		IAI47_06320	0.77	+0.2
1,285,524	-		IAI47_06320	0.77	-0.5
1,285,535	-		IAI47_06320	0.77	+0.5
1,285,662	+		IAI47_06320	0.83	-0.1
1,285,855	+				-3.1
1,285,855	+				-2.3
1,286,014	+				-1.5
1,286,014	+				-1.6
1,286,015	-				-2.1
1,286,015	-				-2.1
1,286,020	+				+0.2
1,286,045	+				-2.4
1,286,045	+				-2.2
1,286,102	+				-0.1
1,286,103	-				-1.3
1,286,185	-				-0.1
1,286,355	-		IAI47_06325	0.21	+0.2
1,286,367	-		IAI47_06325	0.22	-0.3
1,286,367	-		IAI47_06325	0.22	-1.6
1,286,426	+		IAI47_06325	0.27	-0.8
1,286,426	+		IAI47_06325	0.27	-0.9
1,286,427	-		IAI47_06325	0.27	-1.9
1,286,427	-		IAI47_06325	0.27	-0.9
1,286,430	+		IAI47_06325	0.27	-2.7
1,286,473	+		IAI47_06325	0.31	-0.1
1,286,474	-		IAI47_06325	0.31	-1.7
1,286,503	-		IAI47_06325	0.33	-0.3
1,286,503	-		IAI47_06325	0.33	-3.5
1,286,523	+		IAI47_06325	0.35	-0.1
1,286,552	-		IAI47_06325	0.37	-1.5
1,286,581	-		IAI47_06325	0.40	-0.6
1,286,741	+		IAI47_06325	0.53	+0.1
1,286,741	+		IAI47_06325	0.53	+0.1
1,286,741	+		IAI47_06325	0.53	-0.3
1,286,741	+		IAI47_06325	0.53	-1.7
1,286,741	+		IAI47_06325	0.53	-0.9
1,286,741	+		IAI47_06325	0.53	-0.1
1,286,742	-		IAI47_06325	0.53	-0.6
1,286,742	-		IAI47_06325	0.53	-0.3
1,286,742	-		IAI47_06325	0.53	-0.5
1,286,754	+		IAI47_06325	0.54	-0.9
1,286,754	+		IAI47_06325	0.54	-1.4
1,286,813	+		IAI47_06325	0.59	+1.7
1,286,819	+		IAI47_06325	0.60	-1.1
1,286,819	+		IAI47_06325	0.60	-1.3
1,286,819	+		IAI47_06325	0.60	-1.5
1,286,819	+		IAI47_06325	0.60	-0.8
1,286,819	+		IAI47_06325	0.60	-0.9
1,286,820	-		IAI47_06325	0.60	+0.5
1,286,820	-		IAI47_06325	0.60	+0.7
1,286,820	-		IAI47_06325	0.60	+1.5
1,286,820	-		IAI47_06325	0.60	-0.3
1,286,861	-		IAI47_06325	0.63	-1.3
1,286,913	+		IAI47_06325	0.67	-0.9