Strain Fitness in Pantoea sp. MT58 around IAI47_20185

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_20175 and IAI47_20180 overlap by 4 nucleotidesIAI47_20180 and IAI47_20185 are separated by 10 nucleotidesIAI47_20185 and IAI47_20190 are separated by 118 nucleotides IAI47_20175: IAI47_20175 - ABC transporter ATP-binding protein, at 267,169 to 267,954 _20175 IAI47_20180: IAI47_20180 - urea carboxylase-associated family protein, at 267,951 to 268,679 _20180 IAI47_20185: IAI47_20185 - urea carboxylase-associated family protein, at 268,690 to 269,325 _20185 IAI47_20190: IAI47_20190 - urea carboxylase, at 269,444 to 273,049 _20190 Position (kb) 268 269 270Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 267.702 kb on + strand, within IAI47_20175at 267.702 kb on + strand, within IAI47_20175at 267.702 kb on + strand, within IAI47_20175at 267.702 kb on + strand, within IAI47_20175at 267.703 kb on - strand, within IAI47_20175at 267.703 kb on - strand, within IAI47_20175at 267.703 kb on - strand, within IAI47_20175at 267.703 kb on - strand, within IAI47_20175at 267.753 kb on + strand, within IAI47_20175at 267.753 kb on + strand, within IAI47_20175at 267.754 kb on - strand, within IAI47_20175at 267.754 kb on - strand, within IAI47_20175at 267.754 kb on - strand, within IAI47_20175at 267.865 kb on + strand, within IAI47_20175at 267.865 kb on + strand, within IAI47_20175at 267.865 kb on + strand, within IAI47_20175at 267.865 kb on + strand, within IAI47_20175at 267.865 kb on + strand, within IAI47_20175at 267.865 kb on + strand, within IAI47_20175at 267.866 kb on - strand, within IAI47_20175at 267.866 kb on - strand, within IAI47_20175at 267.866 kb on - strand, within IAI47_20175at 267.928 kb on + strandat 267.928 kb on + strandat 267.929 kb on - strandat 267.929 kb on - strandat 267.929 kb on - strandat 267.929 kb on - strandat 267.929 kb on - strandat 268.013 kb on + strandat 268.014 kb on - strandat 268.014 kb on - strandat 268.014 kb on - strandat 268.014 kb on - strandat 268.014 kb on - strandat 268.014 kb on - strandat 268.031 kb on + strand, within IAI47_20180at 268.032 kb on - strand, within IAI47_20180at 268.182 kb on + strand, within IAI47_20180at 268.182 kb on + strand, within IAI47_20180at 268.182 kb on + strand, within IAI47_20180at 268.223 kb on + strand, within IAI47_20180at 268.280 kb on + strand, within IAI47_20180at 268.280 kb on + strand, within IAI47_20180at 268.280 kb on + strand, within IAI47_20180at 268.281 kb on - strand, within IAI47_20180at 268.281 kb on - strand, within IAI47_20180at 268.281 kb on - strand, within IAI47_20180at 268.281 kb on - strand, within IAI47_20180at 268.281 kb on - strand, within IAI47_20180at 268.281 kb on - strand, within IAI47_20180at 268.284 kb on + strand, within IAI47_20180at 268.284 kb on + strand, within IAI47_20180at 268.284 kb on + strand, within IAI47_20180at 268.284 kb on + strand, within IAI47_20180at 268.285 kb on - strand, within IAI47_20180at 268.285 kb on - strand, within IAI47_20180at 268.285 kb on - strand, within IAI47_20180at 268.285 kb on - strand, within IAI47_20180at 268.285 kb on - strand, within IAI47_20180at 268.285 kb on - strand, within IAI47_20180at 268.285 kb on - strand, within IAI47_20180at 268.324 kb on - strand, within IAI47_20180at 268.334 kb on + strand, within IAI47_20180at 268.335 kb on - strand, within IAI47_20180at 268.335 kb on - strand, within IAI47_20180at 268.335 kb on - strand, within IAI47_20180at 268.340 kb on + strand, within IAI47_20180at 268.340 kb on + strand, within IAI47_20180at 268.340 kb on + strand, within IAI47_20180at 268.340 kb on + strand, within IAI47_20180at 268.341 kb on - strand, within IAI47_20180at 268.341 kb on - strand, within IAI47_20180at 268.341 kb on - strand, within IAI47_20180at 268.341 kb on - strand, within IAI47_20180at 268.341 kb on - strand, within IAI47_20180at 268.341 kb on - strand, within IAI47_20180at 268.489 kb on - strand, within IAI47_20180at 268.554 kb on + strand, within IAI47_20180at 268.554 kb on + strand, within IAI47_20180at 268.555 kb on - strand, within IAI47_20180at 268.555 kb on - strand, within IAI47_20180at 268.598 kb on + strand, within IAI47_20180at 268.598 kb on + strand, within IAI47_20180at 268.599 kb on - strand, within IAI47_20180at 268.599 kb on - strand, within IAI47_20180at 268.600 kb on + strand, within IAI47_20180at 268.600 kb on + strand, within IAI47_20180at 268.600 kb on + strand, within IAI47_20180at 268.600 kb on + strand, within IAI47_20180at 268.600 kb on + strand, within IAI47_20180at 268.600 kb on + strand, within IAI47_20180at 268.601 kb on - strand, within IAI47_20180at 268.601 kb on - strand, within IAI47_20180at 268.601 kb on - strand, within IAI47_20180at 268.601 kb on - strand, within IAI47_20180at 268.601 kb on - strand, within IAI47_20180at 268.601 kb on - strand, within IAI47_20180at 268.677 kb on + strandat 268.677 kb on + strandat 268.677 kb on + strandat 268.677 kb on + strandat 268.677 kb on + strandat 268.677 kb on + strandat 268.677 kb on + strandat 268.678 kb on - strandat 268.697 kb on + strandat 268.697 kb on + strandat 268.697 kb on + strandat 268.698 kb on - strandat 268.698 kb on - strandat 268.698 kb on - strandat 268.732 kb on + strandat 268.732 kb on + strandat 268.733 kb on - strandat 268.830 kb on + strand, within IAI47_20185at 268.830 kb on + strand, within IAI47_20185at 268.840 kb on + strand, within IAI47_20185at 268.841 kb on - strand, within IAI47_20185at 268.841 kb on - strand, within IAI47_20185at 268.867 kb on + strand, within IAI47_20185at 268.867 kb on + strand, within IAI47_20185at 268.868 kb on - strand, within IAI47_20185at 268.868 kb on - strand, within IAI47_20185at 268.906 kb on + strand, within IAI47_20185at 268.906 kb on + strand, within IAI47_20185at 268.906 kb on + strand, within IAI47_20185at 268.906 kb on + strand, within IAI47_20185at 268.906 kb on + strand, within IAI47_20185at 268.906 kb on + strand, within IAI47_20185at 268.907 kb on - strand, within IAI47_20185at 268.907 kb on - strand, within IAI47_20185at 268.907 kb on - strand, within IAI47_20185at 268.925 kb on + strand, within IAI47_20185at 268.925 kb on + strand, within IAI47_20185at 268.925 kb on + strand, within IAI47_20185at 268.925 kb on + strand, within IAI47_20185at 268.925 kb on + strand, within IAI47_20185at 268.926 kb on - strand, within IAI47_20185at 268.926 kb on - strand, within IAI47_20185at 268.926 kb on - strand, within IAI47_20185at 268.926 kb on - strand, within IAI47_20185at 268.926 kb on - strand, within IAI47_20185at 268.926 kb on - strand, within IAI47_20185at 268.930 kb on + strand, within IAI47_20185at 268.971 kb on + strand, within IAI47_20185at 268.971 kb on + strand, within IAI47_20185at 269.032 kb on + strand, within IAI47_20185at 269.043 kb on + strand, within IAI47_20185at 269.044 kb on - strand, within IAI47_20185at 269.044 kb on - strand, within IAI47_20185at 269.049 kb on + strand, within IAI47_20185at 269.050 kb on + strand, within IAI47_20185at 269.050 kb on + strand, within IAI47_20185at 269.051 kb on - strand, within IAI47_20185at 269.051 kb on - strand, within IAI47_20185at 269.051 kb on - strand, within IAI47_20185at 269.051 kb on - strand, within IAI47_20185at 269.051 kb on - strand, within IAI47_20185at 269.052 kb on + strand, within IAI47_20185at 269.052 kb on + strand, within IAI47_20185at 269.052 kb on + strand, within IAI47_20185at 269.052 kb on + strand, within IAI47_20185at 269.052 kb on + strand, within IAI47_20185at 269.052 kb on + strand, within IAI47_20185at 269.052 kb on + strand, within IAI47_20185at 269.052 kb on + strand, within IAI47_20185at 269.053 kb on - strand, within IAI47_20185at 269.053 kb on - strand, within IAI47_20185at 269.109 kb on + strand, within IAI47_20185at 269.109 kb on + strand, within IAI47_20185at 269.209 kb on + strand, within IAI47_20185at 269.209 kb on + strand, within IAI47_20185at 269.209 kb on + strand, within IAI47_20185at 269.209 kb on + strand, within IAI47_20185at 269.209 kb on + strand, within IAI47_20185at 269.232 kb on + strand, within IAI47_20185at 269.232 kb on + strand, within IAI47_20185at 269.232 kb on + strand, within IAI47_20185at 269.323 kb on + strandat 269.324 kb on - strandat 269.324 kb on - strandat 269.443 kb on + strandat 269.443 kb on + strandat 269.443 kb on + strandat 269.444 kb on - strandat 269.444 kb on - strandat 269.444 kb on - strandat 269.452 kb on + strandat 269.457 kb on + strandat 269.457 kb on + strandat 269.457 kb on + strandat 269.457 kb on + strandat 269.457 kb on + strandat 269.458 kb on - strandat 269.491 kb on + strandat 269.562 kb on + strandat 269.562 kb on + strandat 269.562 kb on + strandat 269.562 kb on + strandat 269.562 kb on + strandat 269.563 kb on - strandat 269.563 kb on - strandat 269.567 kb on - strandat 269.621 kb on + strandat 269.621 kb on + strandat 269.621 kb on + strandat 269.621 kb on + strandat 269.622 kb on - strandat 269.622 kb on - strandat 269.622 kb on - strandat 269.641 kb on + strandat 269.641 kb on + strandat 269.850 kb on + strand, within IAI47_20190at 269.941 kb on + strand, within IAI47_20190at 269.941 kb on + strand, within IAI47_20190at 269.942 kb on - strand, within IAI47_20190at 269.942 kb on - strand, within IAI47_20190at 269.942 kb on - strand, within IAI47_20190at 269.942 kb on - strand, within IAI47_20190at 269.942 kb on - strand, within IAI47_20190at 270.044 kb on + strand, within IAI47_20190at 270.130 kb on + strand, within IAI47_20190at 270.131 kb on - strand, within IAI47_20190at 270.131 kb on - strand, within IAI47_20190at 270.131 kb on - strand, within IAI47_20190at 270.142 kb on + strand, within IAI47_20190at 270.143 kb on - strand, within IAI47_20190at 270.143 kb on - strand, within IAI47_20190at 270.242 kb on + strand, within IAI47_20190at 270.242 kb on + strand, within IAI47_20190at 270.273 kb on - strand, within IAI47_20190at 270.296 kb on + strand, within IAI47_20190at 270.313 kb on + strand, within IAI47_20190

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
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267,702 + IAI47_20175 0.68 +1.0
267,702 + IAI47_20175 0.68 -0.8
267,702 + IAI47_20175 0.68 -0.8
267,702 + IAI47_20175 0.68 -1.2
267,703 - IAI47_20175 0.68 +1.2
267,703 - IAI47_20175 0.68 -1.8
267,703 - IAI47_20175 0.68 +1.0
267,703 - IAI47_20175 0.68 +0.7
267,753 + IAI47_20175 0.74 +0.2
267,753 + IAI47_20175 0.74 -1.9
267,754 - IAI47_20175 0.74 -2.4
267,754 - IAI47_20175 0.74 -2.6
267,754 - IAI47_20175 0.74 +0.5
267,865 + IAI47_20175 0.89 -1.3
267,865 + IAI47_20175 0.89 +0.3
267,865 + IAI47_20175 0.89 +1.1
267,865 + IAI47_20175 0.89 +0.1
267,865 + IAI47_20175 0.89 -0.5
267,865 + IAI47_20175 0.89 -1.8
267,866 - IAI47_20175 0.89 +0.8
267,866 - IAI47_20175 0.89 -0.3
267,866 - IAI47_20175 0.89 +2.1
267,928 + -1.0
267,928 + +1.2
267,929 - +1.0
267,929 - -0.1
267,929 - -1.2
267,929 - +0.3
267,929 - -0.5
268,013 + -1.0
268,014 - +0.4
268,014 - +0.5
268,014 - -0.6
268,014 - +0.0
268,014 - +1.1
268,014 - -0.7
268,031 + IAI47_20180 0.11 -1.1
268,032 - IAI47_20180 0.11 +0.5
268,182 + IAI47_20180 0.32 -0.5
268,182 + IAI47_20180 0.32 +0.4
268,182 + IAI47_20180 0.32 +0.1
268,223 + IAI47_20180 0.37 +0.9
268,280 + IAI47_20180 0.45 +0.1
268,280 + IAI47_20180 0.45 -1.3
268,280 + IAI47_20180 0.45 -1.3
268,281 - IAI47_20180 0.45 -1.5
268,281 - IAI47_20180 0.45 -1.1
268,281 - IAI47_20180 0.45 -1.0
268,281 - IAI47_20180 0.45 +3.0
268,281 - IAI47_20180 0.45 -2.1
268,281 - IAI47_20180 0.45 -0.1
268,284 + IAI47_20180 0.46 +0.5
268,284 + IAI47_20180 0.46 +0.4
268,284 + IAI47_20180 0.46 +0.0
268,284 + IAI47_20180 0.46 -2.4
268,285 - IAI47_20180 0.46 -0.3
268,285 - IAI47_20180 0.46 -0.1
268,285 - IAI47_20180 0.46 -1.5
268,285 - IAI47_20180 0.46 -0.5
268,285 - IAI47_20180 0.46 -1.0
268,285 - IAI47_20180 0.46 +0.6
268,285 - IAI47_20180 0.46 -2.3
268,324 - IAI47_20180 0.51 +0.1
268,334 + IAI47_20180 0.53 +2.0
268,335 - IAI47_20180 0.53 -0.7
268,335 - IAI47_20180 0.53 +1.1
268,335 - IAI47_20180 0.53 +2.0
268,340 + IAI47_20180 0.53 -0.5
268,340 + IAI47_20180 0.53 +0.9
268,340 + IAI47_20180 0.53 +0.5
268,340 + IAI47_20180 0.53 +1.7
268,341 - IAI47_20180 0.53 +0.1
268,341 - IAI47_20180 0.53 +4.2
268,341 - IAI47_20180 0.53 +3.1
268,341 - IAI47_20180 0.53 +1.8
268,341 - IAI47_20180 0.53 -1.1
268,341 - IAI47_20180 0.53 +0.5
268,489 - IAI47_20180 0.74 -0.2
268,554 + IAI47_20180 0.83 +0.1
268,554 + IAI47_20180 0.83 +2.1
268,555 - IAI47_20180 0.83 +1.0
268,555 - IAI47_20180 0.83 -0.5
268,598 + IAI47_20180 0.89 +0.9
268,598 + IAI47_20180 0.89 +3.7
268,599 - IAI47_20180 0.89 +3.7
268,599 - IAI47_20180 0.89 -1.2
268,600 + IAI47_20180 0.89 +1.5
268,600 + IAI47_20180 0.89 +3.4
268,600 + IAI47_20180 0.89 -0.2
268,600 + IAI47_20180 0.89 -2.9
268,600 + IAI47_20180 0.89 +1.6
268,600 + IAI47_20180 0.89 -0.6
268,601 - IAI47_20180 0.89 +2.6
268,601 - IAI47_20180 0.89 +1.1
268,601 - IAI47_20180 0.89 -0.7
268,601 - IAI47_20180 0.89 +1.3
268,601 - IAI47_20180 0.89 -0.1
268,601 - IAI47_20180 0.89 +1.7
268,677 + +3.2
268,677 + +0.2
268,677 + +1.0
268,677 + +2.1
268,677 + -1.2
268,677 + -1.5
268,677 + +0.7
268,678 - -0.5
268,697 + -0.7
268,697 + +0.2
268,697 + +1.2
268,698 - +1.7
268,698 - +2.7
268,698 - +0.2
268,732 + -1.5
268,732 + -3.0
268,733 - +3.6
268,830 + IAI47_20185 0.22 +3.4
268,830 + IAI47_20185 0.22 +1.0
268,840 + IAI47_20185 0.24 +2.1
268,841 - IAI47_20185 0.24 -2.2
268,841 - IAI47_20185 0.24 +1.5
268,867 + IAI47_20185 0.28 +0.2
268,867 + IAI47_20185 0.28 -0.1
268,868 - IAI47_20185 0.28 +1.3
268,868 - IAI47_20185 0.28 +1.1
268,906 + IAI47_20185 0.34 +0.1
268,906 + IAI47_20185 0.34 +0.3
268,906 + IAI47_20185 0.34 -0.0
268,906 + IAI47_20185 0.34 +0.4
268,906 + IAI47_20185 0.34 +0.7
268,906 + IAI47_20185 0.34 +0.2
268,907 - IAI47_20185 0.34 +2.6
268,907 - IAI47_20185 0.34 +0.8
268,907 - IAI47_20185 0.34 +1.3
268,925 + IAI47_20185 0.37 -2.5
268,925 + IAI47_20185 0.37 -0.5
268,925 + IAI47_20185 0.37 +2.2
268,925 + IAI47_20185 0.37 -0.0
268,925 + IAI47_20185 0.37 -0.3
268,926 - IAI47_20185 0.37 +0.2
268,926 - IAI47_20185 0.37 -0.4
268,926 - IAI47_20185 0.37 -0.1
268,926 - IAI47_20185 0.37 +0.2
268,926 - IAI47_20185 0.37 -1.6
268,926 - IAI47_20185 0.37 -1.6
268,930 + IAI47_20185 0.38 -1.8
268,971 + IAI47_20185 0.44 +1.2
268,971 + IAI47_20185 0.44 -0.1
269,032 + IAI47_20185 0.54 +1.7
269,043 + IAI47_20185 0.56 +0.8
269,044 - IAI47_20185 0.56 -0.7
269,044 - IAI47_20185 0.56 +1.7
269,049 + IAI47_20185 0.56 -0.5
269,050 + IAI47_20185 0.57 +0.1
269,050 + IAI47_20185 0.57 -0.7
269,051 - IAI47_20185 0.57 +0.5
269,051 - IAI47_20185 0.57 -2.5
269,051 - IAI47_20185 0.57 +2.3
269,051 - IAI47_20185 0.57 +0.3
269,051 - IAI47_20185 0.57 -2.1
269,052 + IAI47_20185 0.57 +1.3
269,052 + IAI47_20185 0.57 +0.0
269,052 + IAI47_20185 0.57 -0.5
269,052 + IAI47_20185 0.57 +0.8
269,052 + IAI47_20185 0.57 -0.3
269,052 + IAI47_20185 0.57 -1.1
269,052 + IAI47_20185 0.57 +1.3
269,052 + IAI47_20185 0.57 -1.1
269,053 - IAI47_20185 0.57 +3.3
269,053 - IAI47_20185 0.57 +0.1
269,109 + IAI47_20185 0.66 -1.0
269,109 + IAI47_20185 0.66 +2.1
269,209 + IAI47_20185 0.82 +3.1
269,209 + IAI47_20185 0.82 +2.7
269,209 + IAI47_20185 0.82 +3.2
269,209 + IAI47_20185 0.82 +1.3
269,209 + IAI47_20185 0.82 +0.6
269,232 + IAI47_20185 0.85 -1.0
269,232 + IAI47_20185 0.85 +2.4
269,232 + IAI47_20185 0.85 +0.9
269,323 + +1.9
269,324 - +0.5
269,324 - -0.9
269,443 + -1.1
269,443 + +1.5
269,443 + +1.5
269,444 - -1.1
269,444 - -1.3
269,444 - +2.3
269,452 + -1.4
269,457 + +1.0
269,457 + -0.1
269,457 + +0.1
269,457 + +1.5
269,457 + +2.7
269,458 - -1.2
269,491 + -0.7
269,562 + -1.5
269,562 + +0.7
269,562 + +0.8
269,562 + +1.5
269,562 + -0.7
269,563 - -1.0
269,563 - +0.9
269,567 - +1.3
269,621 + +1.5
269,621 + -2.0
269,621 + +0.0
269,621 + -0.1
269,622 - +2.3
269,622 - +0.6
269,622 - +0.6
269,641 + +1.4
269,641 + -0.3
269,850 + IAI47_20190 0.11 -1.6
269,941 + IAI47_20190 0.14 +1.3
269,941 + IAI47_20190 0.14 -1.3
269,942 - IAI47_20190 0.14 -2.5
269,942 - IAI47_20190 0.14 -2.6
269,942 - IAI47_20190 0.14 -0.1
269,942 - IAI47_20190 0.14 +0.6
269,942 - IAI47_20190 0.14 +2.5
270,044 + IAI47_20190 0.17 +3.1
270,130 + IAI47_20190 0.19 -0.8
270,131 - IAI47_20190 0.19 -0.7
270,131 - IAI47_20190 0.19 +1.2
270,131 - IAI47_20190 0.19 +1.1
270,142 + IAI47_20190 0.19 -1.4
270,143 - IAI47_20190 0.19 -0.2
270,143 - IAI47_20190 0.19 +0.5
270,242 + IAI47_20190 0.22 +2.5
270,242 + IAI47_20190 0.22 -1.6
270,273 - IAI47_20190 0.23 +1.2
270,296 + IAI47_20190 0.24 -0.7
270,313 + IAI47_20190 0.24 +0.3

Or see this region's nucleotide sequence