Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_19500 and IAI47_19505 are separated by 442 nucleotides IAI47_19505 and IAI47_19510 are separated by 35 nucleotides
IAI47_19500: IAI47_19500 - Insecticidal toxin complex protein tccz, at 129,742 to 130,122
_19500
IAI47_19505: IAI47_19505 - hypothetical protein, at 130,565 to 130,858
_19505
IAI47_19510: IAI47_19510 - hypothetical protein, at 130,894 to 131,085
_19510
Position (kb) 130
131
132 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 129.989 kb on + strand, within IAI47_19500 at 130.019 kb on + strand, within IAI47_19500 at 130.032 kb on + strand, within IAI47_19500 at 130.033 kb on - strand, within IAI47_19500 at 130.040 kb on - strand, within IAI47_19500 at 130.049 kb on - strand, within IAI47_19500 at 130.050 kb on + strand, within IAI47_19500 at 130.051 kb on - strand, within IAI47_19500 at 130.116 kb on + strand at 130.116 kb on + strand at 130.117 kb on - strand at 130.140 kb on - strand at 130.156 kb on + strand at 130.157 kb on - strand at 130.158 kb on + strand at 130.173 kb on + strand at 130.174 kb on - strand at 130.174 kb on - strand at 130.203 kb on + strand at 130.211 kb on - strand at 130.250 kb on - strand at 130.260 kb on - strand at 130.260 kb on - strand at 130.283 kb on + strand at 130.343 kb on - strand at 130.343 kb on - strand at 130.343 kb on - strand at 130.346 kb on + strand at 130.346 kb on + strand at 130.346 kb on + strand at 130.346 kb on + strand at 130.346 kb on + strand at 130.347 kb on - strand at 130.347 kb on - strand at 130.386 kb on + strand at 130.386 kb on + strand at 130.485 kb on + strand at 130.494 kb on - strand at 130.510 kb on + strand at 130.510 kb on + strand at 130.510 kb on + strand at 130.511 kb on - strand at 130.542 kb on + strand at 130.542 kb on + strand at 130.542 kb on + strand at 130.542 kb on + strand at 130.543 kb on - strand at 130.543 kb on - strand at 130.543 kb on - strand at 130.543 kb on - strand at 130.543 kb on - strand at 130.543 kb on - strand at 130.543 kb on - strand at 130.563 kb on + strand at 130.563 kb on + strand at 130.564 kb on - strand at 130.589 kb on + strand at 130.589 kb on + strand at 130.589 kb on + strand at 130.589 kb on + strand at 130.589 kb on + strand at 130.589 kb on + strand at 130.589 kb on + strand at 130.590 kb on - strand at 130.590 kb on - strand at 130.590 kb on - strand at 130.590 kb on - strand at 130.591 kb on + strand at 130.591 kb on + strand at 130.591 kb on + strand at 130.592 kb on + strand at 130.592 kb on - strand at 130.592 kb on - strand at 130.595 kb on + strand, within IAI47_19505 at 130.595 kb on + strand, within IAI47_19505 at 130.595 kb on + strand, within IAI47_19505 at 130.596 kb on - strand, within IAI47_19505 at 130.596 kb on - strand, within IAI47_19505 at 130.596 kb on - strand, within IAI47_19505 at 130.596 kb on - strand, within IAI47_19505 at 130.596 kb on - strand, within IAI47_19505 at 130.596 kb on - strand, within IAI47_19505 at 130.596 kb on - strand, within IAI47_19505 at 130.602 kb on + strand, within IAI47_19505 at 130.602 kb on + strand, within IAI47_19505 at 130.603 kb on - strand, within IAI47_19505 at 130.606 kb on + strand, within IAI47_19505 at 130.607 kb on - strand, within IAI47_19505 at 130.616 kb on + strand, within IAI47_19505 at 130.617 kb on - strand, within IAI47_19505 at 130.674 kb on + strand, within IAI47_19505 at 130.677 kb on - strand, within IAI47_19505 at 130.709 kb on - strand, within IAI47_19505 at 130.709 kb on - strand, within IAI47_19505 at 130.735 kb on + strand, within IAI47_19505 at 130.736 kb on - strand, within IAI47_19505 at 130.736 kb on - strand, within IAI47_19505 at 130.739 kb on + strand, within IAI47_19505 at 130.739 kb on + strand, within IAI47_19505 at 130.739 kb on + strand, within IAI47_19505 at 130.739 kb on + strand, within IAI47_19505 at 130.739 kb on + strand, within IAI47_19505 at 130.739 kb on + strand, within IAI47_19505 at 130.739 kb on + strand, within IAI47_19505 at 130.739 kb on + strand, within IAI47_19505 at 130.740 kb on - strand, within IAI47_19505 at 130.740 kb on - strand, within IAI47_19505 at 130.740 kb on - strand, within IAI47_19505 at 130.740 kb on - strand, within IAI47_19505 at 130.740 kb on - strand, within IAI47_19505 at 130.740 kb on - strand, within IAI47_19505 at 130.740 kb on - strand, within IAI47_19505 at 130.740 kb on - strand, within IAI47_19505 at 130.740 kb on - strand, within IAI47_19505 at 130.744 kb on - strand, within IAI47_19505 at 130.744 kb on - strand, within IAI47_19505 at 130.744 kb on - strand, within IAI47_19505 at 130.757 kb on - strand, within IAI47_19505 at 130.757 kb on - strand, within IAI47_19505 at 130.775 kb on - strand, within IAI47_19505 at 130.847 kb on + strand at 130.859 kb on + strand at 130.860 kb on - strand at 130.860 kb on - strand at 130.863 kb on + strand at 130.874 kb on + strand at 130.879 kb on + strand at 130.879 kb on + strand at 130.892 kb on + strand at 130.893 kb on - strand at 130.893 kb on - strand at 130.893 kb on - strand at 130.926 kb on - strand, within IAI47_19510 at 130.926 kb on - strand, within IAI47_19510 at 130.930 kb on + strand, within IAI47_19510 at 130.930 kb on + strand, within IAI47_19510 at 130.931 kb on - strand, within IAI47_19510 at 130.937 kb on + strand, within IAI47_19510 at 130.937 kb on + strand, within IAI47_19510 at 130.938 kb on - strand, within IAI47_19510 at 130.938 kb on - strand, within IAI47_19510 at 130.938 kb on - strand, within IAI47_19510 at 130.938 kb on - strand, within IAI47_19510 at 130.938 kb on - strand, within IAI47_19510 at 130.956 kb on + strand, within IAI47_19510 at 130.957 kb on - strand, within IAI47_19510 at 130.957 kb on - strand, within IAI47_19510 at 131.028 kb on + strand, within IAI47_19510 at 131.029 kb on - strand, within IAI47_19510 at 131.057 kb on - strand, within IAI47_19510 at 131.057 kb on - strand, within IAI47_19510 at 131.104 kb on + strand at 131.104 kb on + strand at 131.105 kb on - strand at 131.105 kb on - strand at 131.108 kb on + strand at 131.108 kb on + strand at 131.108 kb on + strand at 131.108 kb on + strand at 131.108 kb on + strand at 131.108 kb on + strand at 131.108 kb on + strand at 131.108 kb on + strand at 131.108 kb on + strand at 131.108 kb on + strand at 131.108 kb on + strand at 131.108 kb on + strand at 131.109 kb on - strand at 131.109 kb on - strand at 131.109 kb on - strand at 131.109 kb on - strand at 131.109 kb on - strand at 131.109 kb on - strand at 131.109 kb on - strand at 131.109 kb on - strand at 131.109 kb on - strand at 131.109 kb on - strand at 131.109 kb on - strand at 131.109 kb on - strand at 131.112 kb on + strand at 131.112 kb on + strand at 131.112 kb on + strand at 131.112 kb on + strand at 131.112 kb on + strand at 131.112 kb on + strand at 131.112 kb on + strand at 131.112 kb on + strand at 131.113 kb on - strand at 131.113 kb on - strand at 131.113 kb on - strand at 131.113 kb on - strand at 131.113 kb on - strand at 131.113 kb on - strand at 131.113 kb on - strand at 131.113 kb on - strand at 131.113 kb on - strand at 131.132 kb on + strand at 131.161 kb on - strand at 131.161 kb on - strand at 131.161 kb on - strand at 131.199 kb on + strand at 131.199 kb on + strand at 131.199 kb on + strand at 131.200 kb on - strand at 131.201 kb on + strand at 131.202 kb on - strand at 131.229 kb on + strand at 131.247 kb on + strand at 131.247 kb on + strand at 131.248 kb on - strand at 131.248 kb on - strand at 131.260 kb on + strand at 131.260 kb on + strand at 131.260 kb on + strand at 131.261 kb on - strand at 131.261 kb on - strand at 131.306 kb on + strand at 131.306 kb on + strand at 131.306 kb on + strand at 131.307 kb on - strand at 131.307 kb on - strand at 131.356 kb on + strand at 131.356 kb on + strand at 131.356 kb on + strand at 131.356 kb on + strand at 131.356 kb on + strand at 131.357 kb on - strand at 131.357 kb on - strand at 131.403 kb on + strand at 131.403 kb on + strand at 131.407 kb on + strand at 131.407 kb on + strand at 131.408 kb on - strand at 131.408 kb on - strand at 131.408 kb on - strand at 131.455 kb on + strand at 131.455 kb on + strand at 131.455 kb on + strand at 131.455 kb on + strand at 131.456 kb on - strand at 131.567 kb on - strand at 131.567 kb on - strand at 131.570 kb on - strand at 131.589 kb on - strand at 131.613 kb on + strand at 131.613 kb on + strand at 131.615 kb on + strand at 131.616 kb on - strand at 131.616 kb on - strand at 131.620 kb on - strand at 131.620 kb on - strand at 131.624 kb on + strand at 131.624 kb on + strand at 131.625 kb on - strand at 131.625 kb on - strand at 131.625 kb on - strand at 131.625 kb on - strand at 131.625 kb on - strand at 131.625 kb on - strand at 131.625 kb on - strand at 131.625 kb on - strand at 131.625 kb on - strand at 131.625 kb on - strand at 131.625 kb on - strand at 131.625 kb on - strand at 131.654 kb on + strand at 131.654 kb on + strand at 131.654 kb on + strand at 131.654 kb on + strand at 131.655 kb on - strand at 131.775 kb on + strand at 131.777 kb on + strand at 131.777 kb on + strand at 131.777 kb on + strand at 131.777 kb on + strand at 131.778 kb on - strand at 131.778 kb on - strand at 131.778 kb on - strand at 131.778 kb on - strand at 131.877 kb on + strand at 131.877 kb on + strand at 131.878 kb on - strand at 131.900 kb on - strand at 131.935 kb on - strand at 131.939 kb on - strand at 131.965 kb on + strand at 131.966 kb on - strand at 131.973 kb on + strand at 131.973 kb on + strand at 131.973 kb on + strand at 131.974 kb on - strand at 131.974 kb on - strand at 131.977 kb on + strand at 131.978 kb on - strand at 131.979 kb on + strand at 132.009 kb on + strand at 132.010 kb on - strand at 132.022 kb on + strand at 132.022 kb on + strand at 132.023 kb on - strand at 132.023 kb on - strand at 132.049 kb on + strand at 132.049 kb on + strand at 132.049 kb on + strand at 132.049 kb on + strand at 132.050 kb on - strand at 132.056 kb on + strand at 132.056 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 129,989 + IAI47_19500 0.65 +2.1 130,019 + IAI47_19500 0.73 +3.4 130,032 + IAI47_19500 0.76 -0.3 130,033 - IAI47_19500 0.76 +1.5 130,040 - IAI47_19500 0.78 -1.5 130,049 - IAI47_19500 0.81 -0.3 130,050 + IAI47_19500 0.81 +0.2 130,051 - IAI47_19500 0.81 +0.6 130,116 + -2.4 130,116 + -1.6 130,117 - -1.9 130,140 - -1.4 130,156 + -0.7 130,157 - -2.7 130,158 + +1.0 130,173 + -0.7 130,174 - -0.6 130,174 - -3.2 130,203 + -1.3 130,211 - +0.1 130,250 - +2.2 130,260 - -1.6 130,260 - -2.1 130,283 + +0.2 130,343 - +1.0 130,343 - +0.8 130,343 - -1.5 130,346 + -0.1 130,346 + -0.2 130,346 + +0.9 130,346 + +0.1 130,346 + +0.6 130,347 - -1.6 130,347 - -1.4 130,386 + -2.0 130,386 + +1.1 130,485 + -0.7 130,494 - +0.6 130,510 + +0.6 130,510 + -1.8 130,510 + -1.3 130,511 - +1.4 130,542 + -0.3 130,542 + +1.8 130,542 + -0.0 130,542 + +0.9 130,543 - +3.3 130,543 - -0.5 130,543 - +0.5 130,543 - -0.7 130,543 - +0.5 130,543 - -0.6 130,543 - +0.5 130,563 + -0.6 130,563 + +2.2 130,564 - -0.7 130,589 + -0.5 130,589 + +0.8 130,589 + -0.3 130,589 + -1.0 130,589 + +1.6 130,589 + +1.9 130,589 + +0.9 130,590 - -2.3 130,590 - +1.1 130,590 - +0.9 130,590 - -0.2 130,591 + +1.3 130,591 + -0.3 130,591 + +1.8 130,592 + -1.6 130,592 - +1.5 130,592 - +1.1 130,595 + IAI47_19505 0.10 +1.5 130,595 + IAI47_19505 0.10 -1.5 130,595 + IAI47_19505 0.10 -1.0 130,596 - IAI47_19505 0.11 +1.6 130,596 - IAI47_19505 0.11 +0.8 130,596 - IAI47_19505 0.11 +0.9 130,596 - IAI47_19505 0.11 +3.1 130,596 - IAI47_19505 0.11 +2.1 130,596 - IAI47_19505 0.11 +2.6 130,596 - IAI47_19505 0.11 -1.9 130,602 + IAI47_19505 0.13 -0.6 130,602 + IAI47_19505 0.13 -1.2 130,603 - IAI47_19505 0.13 -0.7 130,606 + IAI47_19505 0.14 -1.0 130,607 - IAI47_19505 0.14 -0.3 130,616 + IAI47_19505 0.17 +1.7 130,617 - IAI47_19505 0.18 -0.4 130,674 + IAI47_19505 0.37 +0.5 130,677 - IAI47_19505 0.38 +1.5 130,709 - IAI47_19505 0.49 -1.8 130,709 - IAI47_19505 0.49 +0.2 130,735 + IAI47_19505 0.58 -1.7 130,736 - IAI47_19505 0.58 +0.6 130,736 - IAI47_19505 0.58 +0.1 130,739 + IAI47_19505 0.59 +2.9 130,739 + IAI47_19505 0.59 -1.7 130,739 + IAI47_19505 0.59 +0.8 130,739 + IAI47_19505 0.59 +3.5 130,739 + IAI47_19505 0.59 -2.8 130,739 + IAI47_19505 0.59 -1.0 130,739 + IAI47_19505 0.59 -2.3 130,739 + IAI47_19505 0.59 -0.3 130,740 - IAI47_19505 0.60 -0.2 130,740 - IAI47_19505 0.60 -1.1 130,740 - IAI47_19505 0.60 +1.4 130,740 - IAI47_19505 0.60 -0.2 130,740 - IAI47_19505 0.60 +0.2 130,740 - IAI47_19505 0.60 -1.3 130,740 - IAI47_19505 0.60 +0.8 130,740 - IAI47_19505 0.60 -2.3 130,740 - IAI47_19505 0.60 +1.0 130,744 - IAI47_19505 0.61 -1.3 130,744 - IAI47_19505 0.61 -0.4 130,744 - IAI47_19505 0.61 -0.5 130,757 - IAI47_19505 0.65 -1.4 130,757 - IAI47_19505 0.65 +0.7 130,775 - IAI47_19505 0.71 -0.3 130,847 + -2.2 130,859 + -3.2 130,860 - -1.2 130,860 - -0.5 130,863 + -2.1 130,874 + +1.4 130,879 + -0.7 130,879 + -1.1 130,892 + -1.0 130,893 - +0.1 130,893 - +1.1 130,893 - +2.3 130,926 - IAI47_19510 0.17 -1.2 130,926 - IAI47_19510 0.17 +1.1 130,930 + IAI47_19510 0.19 +1.4 130,930 + IAI47_19510 0.19 -0.7 130,931 - IAI47_19510 0.19 -1.0 130,937 + IAI47_19510 0.22 +0.5 130,937 + IAI47_19510 0.22 +0.4 130,938 - IAI47_19510 0.23 +0.9 130,938 - IAI47_19510 0.23 -0.8 130,938 - IAI47_19510 0.23 -0.3 130,938 - IAI47_19510 0.23 +0.5 130,938 - IAI47_19510 0.23 -0.3 130,956 + IAI47_19510 0.32 -2.2 130,957 - IAI47_19510 0.33 -0.8 130,957 - IAI47_19510 0.33 -0.3 131,028 + IAI47_19510 0.70 -2.0 131,029 - IAI47_19510 0.70 -1.8 131,057 - IAI47_19510 0.85 +1.8 131,057 - IAI47_19510 0.85 -0.8 131,104 + +0.5 131,104 + +0.6 131,105 - +1.8 131,105 - +0.4 131,108 + -1.5 131,108 + +0.5 131,108 + +2.8 131,108 + +1.4 131,108 + +1.3 131,108 + +1.1 131,108 + +1.3 131,108 + -0.1 131,108 + -1.3 131,108 + +2.1 131,108 + -0.8 131,108 + -0.3 131,109 - +1.0 131,109 - +0.4 131,109 - -2.7 131,109 - -1.8 131,109 - +3.3 131,109 - -0.4 131,109 - -1.5 131,109 - +2.7 131,109 - -2.3 131,109 - +1.5 131,109 - +0.7 131,109 - -1.3 131,112 + +1.8 131,112 + +1.6 131,112 + +0.9 131,112 + -2.5 131,112 + +2.5 131,112 + -0.5 131,112 + -1.1 131,112 + -0.3 131,113 - -1.6 131,113 - -0.7 131,113 - -0.4 131,113 - -2.3 131,113 - +2.6 131,113 - -1.8 131,113 - +1.5 131,113 - -0.1 131,113 - +0.1 131,132 + -0.5 131,161 - +1.3 131,161 - +1.0 131,161 - +2.1 131,199 + +0.5 131,199 + -0.7 131,199 + -2.6 131,200 - +2.9 131,201 + -0.3 131,202 - +0.3 131,229 + +0.3 131,247 + -0.6 131,247 + -1.4 131,248 - -1.1 131,248 - +0.1 131,260 + -2.5 131,260 + -0.2 131,260 + +2.1 131,261 - -0.8 131,261 - -0.8 131,306 + +2.0 131,306 + -1.0 131,306 + +0.5 131,307 - +0.2 131,307 - -0.7 131,356 + -1.6 131,356 + +0.6 131,356 + +0.4 131,356 + +0.5 131,356 + -0.0 131,357 - -2.2 131,357 - -0.7 131,403 + +2.3 131,403 + +1.6 131,407 + +2.0 131,407 + +0.4 131,408 - -1.5 131,408 - +0.9 131,408 - -0.7 131,455 + +0.2 131,455 + -1.4 131,455 + +2.8 131,455 + -2.1 131,456 - +0.9 131,567 - +1.5 131,567 - +0.0 131,570 - -1.4 131,589 - +2.6 131,613 + +0.5 131,613 + +0.1 131,615 + -2.3 131,616 - +2.0 131,616 - +0.9 131,620 - +0.1 131,620 - -1.1 131,624 + -1.6 131,624 + -2.3 131,625 - +1.4 131,625 - -0.8 131,625 - +1.0 131,625 - -1.6 131,625 - +0.7 131,625 - -0.1 131,625 - -1.3 131,625 - -1.1 131,625 - -0.5 131,625 - -1.4 131,625 - -1.6 131,625 - +0.6 131,654 + +1.0 131,654 + -1.6 131,654 + +0.6 131,654 + -0.1 131,655 - -0.5 131,775 + +1.8 131,777 + -2.4 131,777 + +1.0 131,777 + -1.1 131,777 + -1.5 131,778 - -0.2 131,778 - -1.3 131,778 - +1.1 131,778 - +0.8 131,877 + +0.3 131,877 + +1.0 131,878 - -1.5 131,900 - -1.6 131,935 - -1.7 131,939 - -0.2 131,965 + +0.9 131,966 - -0.8 131,973 + -0.9 131,973 + -0.3 131,973 + -0.1 131,974 - -0.1 131,974 - -2.2 131,977 + +0.6 131,978 - -1.8 131,979 + -1.0 132,009 + -0.2 132,010 - +0.9 132,022 + +1.3 132,022 + -0.0 132,023 - +1.4 132,023 - +0.6 132,049 + +1.3 132,049 + -1.6 132,049 + +0.9 132,049 + -2.0 132,050 - -0.8 132,056 + -1.1 132,056 + -0.0
Or see this region's nucleotide sequence