Strain Fitness in Pantoea sp. MT58 around IAI47_18725

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,993,187	+		IAI47_18720	0.22	+0.6
3,993,187	+		IAI47_18720	0.22	-0.4
3,993,187	+		IAI47_18720	0.22	+2.7
3,993,188	-		IAI47_18720	0.22	-0.9
3,993,188	-		IAI47_18720	0.22	+0.4
3,993,203	+		IAI47_18720	0.23	-0.1
3,993,203	+		IAI47_18720	0.23	-2.4
3,993,203	+		IAI47_18720	0.23	+0.1
3,993,204	-		IAI47_18720	0.24	-0.1
3,993,204	-		IAI47_18720	0.24	-2.8
3,993,204	-		IAI47_18720	0.24	-1.8
3,993,204	-		IAI47_18720	0.24	-1.2
3,993,215	+		IAI47_18720	0.25	-1.5
3,993,215	+		IAI47_18720	0.25	-1.8
3,993,216	-		IAI47_18720	0.25	-1.9
3,993,216	-		IAI47_18720	0.25	-0.1
3,993,216	-		IAI47_18720	0.25	+0.5
3,993,258	+		IAI47_18720	0.29	+1.4
3,993,259	-		IAI47_18720	0.29	+0.5
3,993,259	-		IAI47_18720	0.29	+1.2
3,993,269	+		IAI47_18720	0.30	-2.2
3,993,299	+		IAI47_18720	0.33	-0.2
3,993,299	+		IAI47_18720	0.33	-2.8
3,993,299	+		IAI47_18720	0.33	-0.4
3,993,300	-		IAI47_18720	0.33	-0.9
3,993,300	-		IAI47_18720	0.33	-2.0
3,993,303	+		IAI47_18720	0.34	-0.5
3,993,304	-		IAI47_18720	0.34	+1.1
3,993,374	+		IAI47_18720	0.41	+2.3
3,993,375	-		IAI47_18720	0.41	+2.8
3,993,375	-		IAI47_18720	0.41	-0.5
3,993,380	+		IAI47_18720	0.42	-0.4
3,993,380	+		IAI47_18720	0.42	-0.9
3,993,381	-		IAI47_18720	0.42	-0.3
3,993,381	-		IAI47_18720	0.42	-1.8
3,993,381	-		IAI47_18720	0.42	-0.0
3,993,381	-		IAI47_18720	0.42	-0.2
3,993,399	+		IAI47_18720	0.44	-2.3
3,993,399	+		IAI47_18720	0.44	-1.9
3,993,400	-		IAI47_18720	0.44	-2.0
3,993,400	-		IAI47_18720	0.44	-2.1
3,993,411	+		IAI47_18720	0.45	+0.7
3,993,411	+		IAI47_18720	0.45	+2.0
3,993,412	-		IAI47_18720	0.45	-0.0
3,993,464	+		IAI47_18720	0.50	-1.4
3,993,476	+		IAI47_18720	0.52	-2.0
3,993,476	+		IAI47_18720	0.52	+0.6
3,993,476	+		IAI47_18720	0.52	-0.7
3,993,477	-		IAI47_18720	0.52	-2.1
3,993,477	-		IAI47_18720	0.52	-1.7
3,993,477	-		IAI47_18720	0.52	+0.4
3,993,478	+		IAI47_18720	0.52	-0.2
3,993,479	-		IAI47_18720	0.52	-1.3
3,993,486	+		IAI47_18720	0.53	+0.5
3,993,486	+		IAI47_18720	0.53	-0.7
3,993,487	-		IAI47_18720	0.53	-1.1
3,993,487	-		IAI47_18720	0.53	-0.2
3,993,487	-		IAI47_18720	0.53	+0.7
3,993,518	-		IAI47_18720	0.56	-2.6
3,993,588	-		IAI47_18720	0.63	+0.5
3,993,614	+		IAI47_18720	0.66	-1.1
3,993,614	+		IAI47_18720	0.66	-0.9
3,993,614	+		IAI47_18720	0.66	-0.1
3,993,615	-		IAI47_18720	0.66	+0.8
3,993,615	-		IAI47_18720	0.66	+1.2
3,993,630	-		IAI47_18720	0.67	-2.6
3,993,630	-		IAI47_18720	0.67	+1.7
3,993,643	+		IAI47_18720	0.69	+0.3
3,993,643	+		IAI47_18720	0.69	-1.4
3,993,644	-		IAI47_18720	0.69	+0.2
3,993,654	+		IAI47_18720	0.70	-1.5
3,993,655	-		IAI47_18720	0.70	-2.0
3,993,655	-		IAI47_18720	0.70	-1.4
3,993,655	-		IAI47_18720	0.70	-1.3
3,993,697	+		IAI47_18720	0.74	-1.1
3,993,697	+		IAI47_18720	0.74	+0.1
3,993,697	+		IAI47_18720	0.74	+0.7
3,993,697	+		IAI47_18720	0.74	-1.6
3,993,698	-		IAI47_18720	0.75	-2.6
3,993,698	-		IAI47_18720	0.75	-1.4
3,993,713	+		IAI47_18720	0.76	+0.4
3,993,713	+		IAI47_18720	0.76	+0.7
3,993,714	-		IAI47_18720	0.76	-0.2
3,993,781	+		IAI47_18720	0.83	+1.9
3,993,781	+		IAI47_18720	0.83	-1.0
3,993,782	-		IAI47_18720	0.83	-2.3
3,993,782	-		IAI47_18720	0.83	+0.6
3,993,782	-		IAI47_18720	0.83	-2.1
3,993,782	-		IAI47_18720	0.83	-0.4
3,993,804	+		IAI47_18720	0.85	+0.7
3,993,804	+		IAI47_18720	0.85	+1.9
3,993,807	+		IAI47_18720	0.86	+1.9
3,993,808	-		IAI47_18720	0.86	+0.2
3,993,868	+				+0.6
3,993,869	-				-1.1
3,993,882	+				-0.5
3,993,883	-				-2.5
3,993,929	+				-2.8
3,993,929	+				+0.3
3,993,930	-				-1.6
3,993,930	-				-1.4
3,993,930	-				+0.6
3,993,930	-				-1.4
3,993,933	+				+2.0
3,993,933	+				-1.1
3,993,933	+				-0.2
3,993,933	+				-0.3
3,993,933	+				-2.3
3,993,934	-				-2.4
3,993,934	-				-1.1
3,993,934	-				+0.7
3,993,934	-				-0.3
3,993,935	+				-2.1
3,993,935	+				+1.5
3,993,935	+				+0.9
3,993,936	-				-1.1
3,993,936	-				-0.6
3,993,936	-				-1.9
3,993,944	+				+1.7
3,993,944	+				+1.7
3,993,945	-				-1.9
3,993,967	-				-0.7
3,993,967	-				+1.9
3,993,988	+				-1.2
3,993,988	+				+0.1
3,993,989	-				-0.3
3,993,989	-				-2.3
3,993,993	+				-0.9
3,993,993	+				+0.3
3,994,000	+				-0.5
3,994,030	+				+1.1
3,994,030	+				-1.1
3,994,030	+				-1.6
3,994,031	-				-1.2
3,994,039	+				-1.6
3,994,039	+				-1.7
3,994,040	-				+0.6
3,994,040	-				-1.5
3,994,040	-				-1.1
3,994,070	+				-0.7
3,994,079	-				-1.2
3,994,084	+				-2.3
3,994,103	-				-1.4
3,994,117	+				+0.1
3,994,117	+				+0.9
3,994,133	-				+0.3
3,994,143	-				+1.4
3,994,147	+				-2.2
3,994,147	+				-0.2
3,994,148	-				+0.6
3,994,148	-				-1.3
3,994,781	-				+0.6
3,994,833	+				-1.0
3,994,833	+				-0.4
3,994,833	+				+0.8
3,994,834	-				-3.0
3,994,834	-				-0.1
3,994,834	-				-0.2
3,994,834	-				-1.3
3,994,835	+				+1.1
3,994,835	+				+1.5
3,994,835	+				+1.4
3,994,835	+				-3.1
3,994,835	+				-1.5
3,994,835	+				-1.4
3,994,835	+				+0.6
3,994,836	-				-2.3
3,994,836	-				-1.7
3,994,836	-				-2.9
3,994,836	-				-3.1
3,994,839	+				-2.3
3,994,839	+				-3.2
3,994,840	-				-0.5
3,994,850	-				+0.0
3,994,850	-				-0.6
3,994,854	+				+1.5
3,994,854	+				+0.7
3,994,854	+				+0.5
3,994,855	-				+0.1
3,994,855	-				+1.4
3,994,862	+				+1.1
3,994,862	+				-1.4
3,994,874	+				+0.1
3,994,874	+				+1.9
3,994,874	+				+1.4
3,994,875	-				+0.4
3,994,875	-				-1.2
3,994,875	-				+0.5
3,994,875	-				-0.2
3,994,883	+				-1.1
3,994,906	+				-0.4
3,994,906	+				-2.0
3,994,923	+				+1.6
3,994,923	+				-2.0
3,995,150	-				+1.2
3,995,302	+		IAI47_18730	0.19	+1.2
3,995,302	+		IAI47_18730	0.19	-0.6
3,995,303	-		IAI47_18730	0.19	-0.9
3,995,303	-		IAI47_18730	0.19	-0.9
3,995,367	+		IAI47_18730	0.24	-1.4
3,995,367	+		IAI47_18730	0.24	+2.6
3,995,367	+		IAI47_18730	0.24	-1.7
3,995,367	+		IAI47_18730	0.24	-3.0
3,995,368	-		IAI47_18730	0.24	-1.2
3,995,381	+		IAI47_18730	0.25	+0.2
3,995,438	+		IAI47_18730	0.29	+0.9
3,995,439	-		IAI47_18730	0.29	-1.0
3,995,439	-		IAI47_18730	0.29	-2.4
3,995,439	-		IAI47_18730	0.29	+1.0
3,995,439	-		IAI47_18730	0.29	+1.7
3,995,439	-		IAI47_18730	0.29	-0.9
3,995,447	-		IAI47_18730	0.30	-1.9
3,995,447	-		IAI47_18730	0.30	+1.9
3,995,537	+		IAI47_18730	0.37	-1.7
3,995,537	+		IAI47_18730	0.37	+1.2
3,995,537	+		IAI47_18730	0.37	+1.9
3,995,538	-		IAI47_18730	0.37	+4.3
3,995,538	-		IAI47_18730	0.37	+0.4
3,995,624	+		IAI47_18730	0.43	-3.1
3,995,625	-		IAI47_18730	0.43	+1.0