Strain Fitness in Pantoea sp. MT58 around IAI47_18480

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,930,145	+				+2.9
3,930,146	-				-0.3
3,930,199	+		IAI47_18475	0.13	-1.4
3,930,199	+		IAI47_18475	0.13	-0.8
3,930,199	+		IAI47_18475	0.13	-1.8
3,930,200	-		IAI47_18475	0.13	+0.5
3,930,200	-		IAI47_18475	0.13	-2.5
3,930,216	-		IAI47_18475	0.14	-1.7
3,930,216	-		IAI47_18475	0.14	+0.7
3,930,271	+		IAI47_18475	0.20	-2.1
3,930,272	-		IAI47_18475	0.20	-0.2
3,930,272	-		IAI47_18475	0.20	-1.4
3,930,334	+		IAI47_18475	0.25	+1.5
3,930,334	+		IAI47_18475	0.25	+2.8
3,930,335	-		IAI47_18475	0.26	-2.5
3,930,339	+		IAI47_18475	0.26	+2.1
3,930,340	-		IAI47_18475	0.26	+3.0
3,930,368	+		IAI47_18475	0.29	+0.5
3,930,372	+		IAI47_18475	0.29	+1.2
3,930,372	+		IAI47_18475	0.29	-0.1
3,930,372	+		IAI47_18475	0.29	-1.5
3,930,372	+		IAI47_18475	0.29	-0.8
3,930,372	+		IAI47_18475	0.29	+1.3
3,930,373	-		IAI47_18475	0.29	-2.4
3,930,373	-		IAI47_18475	0.29	+3.2
3,930,459	+		IAI47_18475	0.37	-1.0
3,930,459	+		IAI47_18475	0.37	-2.2
3,930,459	+		IAI47_18475	0.37	+0.0
3,930,459	+		IAI47_18475	0.37	+0.2
3,930,459	+		IAI47_18475	0.37	+0.6
3,930,459	+		IAI47_18475	0.37	-0.4
3,930,460	-		IAI47_18475	0.37	-0.4
3,930,536	+		IAI47_18475	0.44	+0.9
3,930,537	-		IAI47_18475	0.44	-2.8
3,930,547	+		IAI47_18475	0.45	+1.2
3,930,547	+		IAI47_18475	0.45	+0.9
3,930,548	-		IAI47_18475	0.46	-0.6
3,930,548	-		IAI47_18475	0.46	-2.3
3,930,556	+		IAI47_18475	0.46	-1.7
3,930,556	+		IAI47_18475	0.46	-0.3
3,930,557	-		IAI47_18475	0.46	-1.2
3,930,557	-		IAI47_18475	0.46	+0.3
3,930,557	-		IAI47_18475	0.46	-2.3
3,930,589	+		IAI47_18475	0.49	+2.2
3,930,589	+		IAI47_18475	0.49	+1.5
3,930,589	+		IAI47_18475	0.49	+2.0
3,930,590	-		IAI47_18475	0.49	+2.0
3,930,590	-		IAI47_18475	0.49	+0.7
3,930,590	-		IAI47_18475	0.49	+0.6
3,930,645	+		IAI47_18475	0.55	+1.5
3,930,645	+		IAI47_18475	0.55	+0.2
3,930,645	+		IAI47_18475	0.55	+1.1
3,930,645	+		IAI47_18475	0.55	-1.4
3,930,646	-		IAI47_18475	0.55	+0.9
3,930,646	-		IAI47_18475	0.55	-1.9
3,930,646	-		IAI47_18475	0.55	+0.2
3,930,646	-		IAI47_18475	0.55	-0.4
3,930,646	-		IAI47_18475	0.55	-0.5
3,930,684	+		IAI47_18475	0.58	+0.4
3,930,685	-		IAI47_18475	0.58	+0.7
3,930,738	-		IAI47_18475	0.63	-1.1
3,930,753	+		IAI47_18475	0.65	+2.2
3,930,753	+		IAI47_18475	0.65	+1.4
3,930,753	+		IAI47_18475	0.65	-2.0
3,930,753	+		IAI47_18475	0.65	-0.3
3,930,753	+		IAI47_18475	0.65	-2.1
3,930,754	-		IAI47_18475	0.65	+0.3
3,930,789	+		IAI47_18475	0.68	+0.7
3,930,789	+		IAI47_18475	0.68	+1.2
3,930,952	+		IAI47_18475	0.83	+1.4
3,931,007	+		IAI47_18475	0.88	+1.9
3,931,008	-		IAI47_18475	0.89	-0.0
3,931,008	-		IAI47_18475	0.89	+1.4
3,931,008	-		IAI47_18475	0.89	-2.5
3,931,008	-		IAI47_18475	0.89	+5.1
3,931,008	-		IAI47_18475	0.89	+0.6
3,931,010	+		IAI47_18475	0.89	+2.7
3,931,010	+		IAI47_18475	0.89	-0.3
3,931,010	+		IAI47_18475	0.89	+0.7
3,931,010	+		IAI47_18475	0.89	+1.4
3,931,011	-		IAI47_18475	0.89	-1.0
3,931,011	-		IAI47_18475	0.89	+1.4
3,931,011	-		IAI47_18475	0.89	+2.3
3,931,055	+				+1.4
3,931,055	+				-0.9
3,931,055	+				-0.4
3,931,055	+				+0.4
3,931,055	+				-0.7
3,931,055	+				+1.4
3,931,055	+				-1.5
3,931,055	+				-0.9
3,931,055	+				-0.1
3,931,056	-				-1.1
3,931,056	-				-0.9
3,931,056	-				+2.1
3,931,120	-				-0.4
3,931,121	+				-1.8
3,931,122	-				+1.7
3,931,122	-				+1.4
3,931,122	-				-2.6
3,931,122	-				+3.2
3,931,143	-				-3.2
3,931,149	+				+0.8
3,931,150	-				-2.4
3,931,150	-				+3.1
3,931,150	-				+0.7
3,931,175	+				-0.1
3,931,175	+				-1.6
3,931,175	+				-2.0
3,931,175	+				-2.4
3,931,176	-				-4.6
3,931,176	-				-4.2
3,931,184	+				-1.8
3,931,184	+				-3.7
3,931,184	+				-2.8
3,931,184	+				-1.0
3,931,184	+				-3.4
3,931,184	+				-3.6
3,931,184	+				-2.8
3,931,185	-				-4.0
3,931,185	-				-3.6
3,931,185	-				-2.5
3,931,188	+				-1.4
3,931,189	-				-1.4
3,931,189	-				-2.9
3,931,194	+				-2.0
3,931,194	+				-2.3
3,931,194	+				-1.1
3,931,194	+				-1.4
3,931,194	+				-3.4
3,931,194	+				-0.5
3,931,194	+				-4.2
3,931,195	-				-3.5
3,931,195	-				-2.8
3,931,195	-				-2.8
3,931,195	-				-2.5
3,931,195	-				-3.8
3,931,195	-				-3.9
3,931,195	-				-3.2
3,931,195	-				-3.4
3,931,195	-				-3.4
3,931,196	+				-3.0
3,931,196	+				-2.7
3,931,197	-				-3.0
3,931,225	+				-1.8
3,931,225	+				-1.7
3,931,225	+				-2.7
3,931,226	-				-2.7
3,931,226	-				-4.1
3,931,289	+		IAI47_18480	0.13	-3.4
3,931,289	+		IAI47_18480	0.13	+0.1
3,931,289	+		IAI47_18480	0.13	-1.3
3,931,289	+		IAI47_18480	0.13	-1.6
3,931,290	-		IAI47_18480	0.13	-4.1
3,931,290	-		IAI47_18480	0.13	-3.5
3,931,290	-		IAI47_18480	0.13	-5.2
3,931,334	+		IAI47_18480	0.17	-2.2
3,931,334	+		IAI47_18480	0.17	-2.8
3,931,334	+		IAI47_18480	0.17	-1.1
3,931,560	+		IAI47_18480	0.35	-0.9
3,931,576	-		IAI47_18480	0.36	-2.9
3,931,582	+		IAI47_18480	0.36	-1.0
3,931,582	+		IAI47_18480	0.36	-1.1
3,931,582	+		IAI47_18480	0.36	-3.1
3,931,582	+		IAI47_18480	0.36	-3.3
3,931,583	-		IAI47_18480	0.37	-4.8
3,931,586	+		IAI47_18480	0.37	-2.3
3,931,586	+		IAI47_18480	0.37	-2.6
3,931,587	-		IAI47_18480	0.37	-4.4
3,931,587	-		IAI47_18480	0.37	-4.0
3,931,587	-		IAI47_18480	0.37	-4.1
3,931,599	+		IAI47_18480	0.38	-1.8
3,931,624	+		IAI47_18480	0.40	-3.1
3,931,625	-		IAI47_18480	0.40	-3.3
3,931,659	+		IAI47_18480	0.43	-1.2
3,931,716	+		IAI47_18480	0.47	-2.5
3,931,717	-		IAI47_18480	0.47	-4.2
3,931,717	-		IAI47_18480	0.47	-3.7
3,931,717	-		IAI47_18480	0.47	-3.7
3,931,718	+		IAI47_18480	0.47	-3.3
3,931,718	+		IAI47_18480	0.47	-3.2
3,931,718	+		IAI47_18480	0.47	-2.9
3,931,719	-		IAI47_18480	0.47	-2.5
3,931,719	-		IAI47_18480	0.47	-1.3
3,931,732	-		IAI47_18480	0.48	-2.2
3,931,862	+		IAI47_18480	0.59	-1.0
3,931,974	+		IAI47_18480	0.68	-2.6
3,931,974	+		IAI47_18480	0.68	-2.5
3,931,975	-		IAI47_18480	0.68	-3.6
3,932,033	+		IAI47_18480	0.73	-1.1
3,932,121	+		IAI47_18480	0.80	-2.1
3,932,122	-		IAI47_18480	0.80	-2.6
3,932,171	+		IAI47_18480	0.84	-3.7
3,932,171	+		IAI47_18480	0.84	-1.5
3,932,172	-		IAI47_18480	0.84	-3.8
3,932,172	-		IAI47_18480	0.84	-3.1
3,932,172	-		IAI47_18480	0.84	-1.1
3,932,183	+		IAI47_18480	0.84	-2.5
3,932,183	+		IAI47_18480	0.84	-3.3
3,932,183	+		IAI47_18480	0.84	-1.9
3,932,183	+		IAI47_18480	0.84	-2.2
3,932,183	+		IAI47_18480	0.84	-1.7
3,932,183	+		IAI47_18480	0.84	-2.5
3,932,183	+		IAI47_18480	0.84	-2.4
3,932,183	+		IAI47_18480	0.84	-2.1
3,932,183	+		IAI47_18480	0.84	-2.4
3,932,183	+		IAI47_18480	0.84	-1.0
3,932,183	+		IAI47_18480	0.84	-2.6
3,932,183	+		IAI47_18480	0.84	+1.0
3,932,183	+		IAI47_18480	0.84	-2.8
3,932,183	+		IAI47_18480	0.84	-1.6
3,932,183	+		IAI47_18480	0.84	-2.3
3,932,183	+		IAI47_18480	0.84	-2.1
3,932,183	+		IAI47_18480	0.84	-1.9
3,932,183	+		IAI47_18480	0.84	-3.2
3,932,184	-		IAI47_18480	0.85	-1.7
3,932,184	-		IAI47_18480	0.85	-3.2
3,932,184	-		IAI47_18480	0.85	-4.2
3,932,184	-		IAI47_18480	0.85	-2.2
3,932,184	-		IAI47_18480	0.85	-3.9
3,932,184	-		IAI47_18480	0.85	-3.4
3,932,184	-		IAI47_18480	0.85	-3.0
3,932,184	-		IAI47_18480	0.85	-3.7
3,932,184	-		IAI47_18480	0.85	-3.2
3,932,405	+				+1.1
3,932,420	+				-1.7
3,932,420	+				-0.8
3,932,420	+				+2.0
3,932,420	+				-0.7
3,932,420	+				-1.6
3,932,420	+				-0.4
3,932,420	+				+0.1
3,932,420	+				+1.7
3,932,421	-				-1.0
3,932,421	-				+2.6
3,932,423	+				+1.2
3,932,435	+				-1.4
3,932,437	+				+1.9
3,932,437	+				+3.0
3,932,437	+				-0.1
3,932,437	+				-1.2
3,932,437	+				+0.2
3,932,437	+				-0.4
3,932,438	-				-0.2
3,932,480	+				+0.7
3,932,480	+				+0.7
3,932,480	+				+1.6
3,932,481	-				-0.9
3,932,481	-				+1.6
3,932,481	-				-2.1
3,932,481	-				-1.3
3,932,481	-				-2.5
3,932,481	-				+0.6
3,932,482	+				+1.0
3,932,482	+				-0.1
3,932,482	+				+0.5
3,932,482	+				+0.3
3,932,543	+		IAI47_18485	0.15	-1.1
3,932,543	+		IAI47_18485	0.15	+1.3
3,932,544	-		IAI47_18485	0.15	+1.9
3,932,544	-		IAI47_18485	0.15	+1.2
3,932,545	+		IAI47_18485	0.15	+0.2
3,932,545	+		IAI47_18485	0.15	+0.5
3,932,545	+		IAI47_18485	0.15	+0.4
3,932,545	+		IAI47_18485	0.15	-2.6
3,932,545	+		IAI47_18485	0.15	-1.9
3,932,545	+		IAI47_18485	0.15	+1.0
3,932,546	-		IAI47_18485	0.15	+0.5
3,932,546	-		IAI47_18485	0.15	+1.0
3,932,546	-		IAI47_18485	0.15	-1.2
3,932,546	-		IAI47_18485	0.15	+0.5
3,932,562	+		IAI47_18485	0.16	+0.4
3,932,562	+		IAI47_18485	0.16	-0.1
3,932,563	-		IAI47_18485	0.17	-1.2
3,932,624	+		IAI47_18485	0.22	+3.5
3,932,625	-		IAI47_18485	0.22	-1.2
3,932,625	-		IAI47_18485	0.22	+2.3
3,932,626	+		IAI47_18485	0.22	-0.6
3,932,626	+		IAI47_18485	0.22	-2.2
3,932,626	+		IAI47_18485	0.22	+0.7
3,932,626	+		IAI47_18485	0.22	+0.5
3,932,626	+		IAI47_18485	0.22	-2.0
3,932,627	-		IAI47_18485	0.22	-0.8
3,932,627	-		IAI47_18485	0.22	+0.4
3,932,627	-		IAI47_18485	0.22	-0.6
3,932,627	-		IAI47_18485	0.22	-1.4
3,932,627	-		IAI47_18485	0.22	+1.0
3,932,678	+		IAI47_18485	0.27	+0.0
3,932,678	+		IAI47_18485	0.27	+1.4
3,932,678	+		IAI47_18485	0.27	+1.9
3,932,679	-		IAI47_18485	0.27	-0.1
3,932,679	-		IAI47_18485	0.27	+1.4
3,932,679	-		IAI47_18485	0.27	+0.0
3,932,713	+		IAI47_18485	0.30	+2.5
3,932,713	+		IAI47_18485	0.30	+3.6
3,932,714	-		IAI47_18485	0.30	-2.4
3,932,716	+		IAI47_18485	0.30	+1.3
3,932,716	+		IAI47_18485	0.30	+0.7
3,932,717	-		IAI47_18485	0.30	+1.9
3,932,782	+		IAI47_18485	0.36	-1.4
3,932,783	-		IAI47_18485	0.36	+0.2
3,932,783	-		IAI47_18485	0.36	+0.4
3,932,783	-		IAI47_18485	0.36	+0.0
3,932,783	-		IAI47_18485	0.36	+3.0
3,932,809	+		IAI47_18485	0.38	+2.4
3,932,810	-		IAI47_18485	0.38	+1.0
3,932,810	-		IAI47_18485	0.38	+0.4
3,932,834	+		IAI47_18485	0.40	+1.0
3,932,834	+		IAI47_18485	0.40	+1.7
3,932,834	+		IAI47_18485	0.40	-0.1
3,932,835	-		IAI47_18485	0.41	+1.3
3,932,836	+		IAI47_18485	0.41	-1.1
3,932,836	+		IAI47_18485	0.41	-1.1
3,932,836	+		IAI47_18485	0.41	+0.5
3,932,836	+		IAI47_18485	0.41	+0.0
3,932,836	+		IAI47_18485	0.41	-0.7
3,932,836	+		IAI47_18485	0.41	+0.4
3,932,837	-		IAI47_18485	0.41	+0.9
3,932,837	-		IAI47_18485	0.41	-1.3
3,932,837	-		IAI47_18485	0.41	-2.8
3,932,837	-		IAI47_18485	0.41	-1.7
3,932,837	-		IAI47_18485	0.41	+0.6
3,932,837	-		IAI47_18485	0.41	-1.1
3,932,837	-		IAI47_18485	0.41	+1.0
3,932,837	-		IAI47_18485	0.41	+0.9
3,932,837	-		IAI47_18485	0.41	+0.6
3,932,837	-		IAI47_18485	0.41	-2.0
3,932,837	-		IAI47_18485	0.41	-0.3
3,932,837	-		IAI47_18485	0.41	-0.8
3,932,837	-		IAI47_18485	0.41	+0.9
3,932,837	-		IAI47_18485	0.41	+2.2
3,932,837	-		IAI47_18485	0.41	-0.6
3,932,840	+		IAI47_18485	0.41	-1.0
3,932,840	+		IAI47_18485	0.41	-1.5
3,932,840	+		IAI47_18485	0.41	+1.6
3,932,841	-		IAI47_18485	0.41	-1.4
3,932,876	+		IAI47_18485	0.44	-2.7
3,932,877	-		IAI47_18485	0.44	+0.7
3,932,924	+		IAI47_18485	0.48	-2.0
3,932,925	-		IAI47_18485	0.49	+1.9
3,932,959	+		IAI47_18485	0.52	-1.2
3,932,960	-		IAI47_18485	0.52	+1.9
3,932,960	-		IAI47_18485	0.52	+0.4
3,932,960	-		IAI47_18485	0.52	+2.6
3,932,993	+		IAI47_18485	0.55	-0.7
3,932,993	+		IAI47_18485	0.55	-1.5
3,932,994	-		IAI47_18485	0.55	+1.4
3,932,994	-		IAI47_18485	0.55	-0.4
3,932,994	-		IAI47_18485	0.55	+0.8
3,932,994	-		IAI47_18485	0.55	-2.3
3,933,025	+		IAI47_18485	0.57	+0.0
3,933,025	+		IAI47_18485	0.57	-1.9
3,933,025	+		IAI47_18485	0.57	+0.4
3,933,025	+		IAI47_18485	0.57	-1.4
3,933,025	+		IAI47_18485	0.57	-0.3
3,933,026	-		IAI47_18485	0.57	-2.0
3,933,026	-		IAI47_18485	0.57	+0.6
3,933,026	-		IAI47_18485	0.57	-0.9
3,933,071	+		IAI47_18485	0.61	+1.0
3,933,071	+		IAI47_18485	0.61	-1.9
3,933,071	+		IAI47_18485	0.61	+1.3
3,933,071	+		IAI47_18485	0.61	+1.1
3,933,071	+		IAI47_18485	0.61	-0.2
3,933,072	-		IAI47_18485	0.62	-1.1
3,933,072	-		IAI47_18485	0.62	-0.9
3,933,072	-		IAI47_18485	0.62	-1.4
3,933,072	-		IAI47_18485	0.62	-1.2
3,933,072	-		IAI47_18485	0.62	+0.6
3,933,072	-		IAI47_18485	0.62	-2.0
3,933,072	-		IAI47_18485	0.62	+3.0
3,933,072	-		IAI47_18485	0.62	-0.2
3,933,072	-		IAI47_18485	0.62	-1.1
3,933,072	-		IAI47_18485	0.62	-2.6
3,933,072	-		IAI47_18485	0.62	-1.4
3,933,093	-		IAI47_18485	0.63	-1.6
3,933,093	-		IAI47_18485	0.63	-1.1
3,933,125	-		IAI47_18485	0.66	+1.0
3,933,125	-		IAI47_18485	0.66	+1.0
3,933,251	+		IAI47_18485	0.77	-0.4
3,933,271	+		IAI47_18485	0.79	+0.4
3,933,271	+		IAI47_18485	0.79	-2.1
3,933,271	+		IAI47_18485	0.79	-2.4
3,933,272	-		IAI47_18485	0.79	+0.2
3,933,312	+		IAI47_18485	0.83	+1.6
3,933,312	+		IAI47_18485	0.83	-1.1
3,933,313	-		IAI47_18485	0.83	+1.3
3,933,342	-		IAI47_18485	0.85	+0.4
3,933,372	-		IAI47_18485	0.88	+2.2