Strain Fitness in Pantoea sp. MT58 around IAI47_18470

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,927,879	-				-0.7
3,927,879	-				-0.4
3,927,905	-				-0.1
3,927,905	-				+0.9
3,927,905	-				-0.6
3,927,945	+				+1.0
3,927,945	+				-0.5
3,927,945	+				+0.7
3,927,946	-				-1.9
3,927,954	+				-2.8
3,927,954	+				-0.7
3,927,955	-				-1.1
3,927,955	-				-2.0
3,927,955	-				+0.1
3,927,955	-				+1.1
3,927,978	+				+1.8
3,927,987	+				+1.8
3,927,987	+				-1.4
3,927,987	+				+0.9
3,927,988	-				-0.4
3,927,992	-				-0.2
3,927,992	-				-2.2
3,928,001	+				+1.1
3,928,002	-				-0.7
3,928,041	+		IAI47_18465	0.11	-1.2
3,928,041	+		IAI47_18465	0.11	+1.0
3,928,042	-		IAI47_18465	0.12	-2.7
3,928,042	-		IAI47_18465	0.12	+2.5
3,928,110	+		IAI47_18465	0.21	-0.6
3,928,110	+		IAI47_18465	0.21	+0.7
3,928,110	+		IAI47_18465	0.21	-0.6
3,928,110	+		IAI47_18465	0.21	+0.9
3,928,110	+		IAI47_18465	0.21	-1.4
3,928,111	-		IAI47_18465	0.21	-1.2
3,928,111	-		IAI47_18465	0.21	-1.9
3,928,111	-		IAI47_18465	0.21	-1.2
3,928,111	-		IAI47_18465	0.21	-1.7
3,928,111	-		IAI47_18465	0.21	+0.6
3,928,111	-		IAI47_18465	0.21	+0.9
3,928,111	-		IAI47_18465	0.21	-3.1
3,928,111	-		IAI47_18465	0.21	-1.0
3,928,121	+		IAI47_18465	0.22	-1.8
3,928,131	+		IAI47_18465	0.24	+2.5
3,928,131	+		IAI47_18465	0.24	+1.3
3,928,131	+		IAI47_18465	0.24	-1.4
3,928,132	-		IAI47_18465	0.24	-0.1
3,928,132	-		IAI47_18465	0.24	-1.1
3,928,132	-		IAI47_18465	0.24	-0.8
3,928,132	-		IAI47_18465	0.24	-0.6
3,928,132	-		IAI47_18465	0.24	+2.3
3,928,132	-		IAI47_18465	0.24	+0.8
3,928,132	-		IAI47_18465	0.24	-1.1
3,928,132	-		IAI47_18465	0.24	-0.9
3,928,132	-		IAI47_18465	0.24	-1.7
3,928,199	+		IAI47_18465	0.33	-0.3
3,928,199	+		IAI47_18465	0.33	+2.1
3,928,199	+		IAI47_18465	0.33	-0.5
3,928,200	-		IAI47_18465	0.33	-1.2
3,928,200	-		IAI47_18465	0.33	+1.9
3,928,270	-		IAI47_18465	0.42	+1.2
3,928,270	-		IAI47_18465	0.42	-1.0
3,928,270	-		IAI47_18465	0.42	-0.4
3,928,270	-		IAI47_18465	0.42	-1.3
3,928,291	+		IAI47_18465	0.45	+1.5
3,928,291	+		IAI47_18465	0.45	+1.3
3,928,291	+		IAI47_18465	0.45	-0.1
3,928,292	-		IAI47_18465	0.45	-0.9
3,928,292	-		IAI47_18465	0.45	+0.7
3,928,292	-		IAI47_18465	0.45	-0.6
3,928,292	-		IAI47_18465	0.45	-1.1
3,928,292	-		IAI47_18465	0.45	-2.0
3,928,292	-		IAI47_18465	0.45	+0.5
3,928,292	-		IAI47_18465	0.45	-0.1
3,928,318	+		IAI47_18465	0.49	+0.4
3,928,318	+		IAI47_18465	0.49	-0.3
3,928,318	+		IAI47_18465	0.49	+1.4
3,928,318	+		IAI47_18465	0.49	+0.7
3,928,319	-		IAI47_18465	0.49	-1.7
3,928,319	-		IAI47_18465	0.49	-1.1
3,928,409	+		IAI47_18465	0.61	+0.8
3,928,410	-		IAI47_18465	0.61	-2.4
3,928,457	-		IAI47_18465	0.68	-1.7
3,928,474	+		IAI47_18465	0.70	-1.7
3,928,474	+		IAI47_18465	0.70	+0.0
3,928,474	+		IAI47_18465	0.70	+0.0
3,928,475	-		IAI47_18465	0.70	+1.4
3,928,475	-		IAI47_18465	0.70	-1.2
3,928,475	-		IAI47_18465	0.70	-1.6
3,928,475	-		IAI47_18465	0.70	-0.8
3,928,491	+		IAI47_18465	0.72	-2.9
3,928,491	+		IAI47_18465	0.72	+0.9
3,928,491	+		IAI47_18465	0.72	-1.1
3,928,491	+		IAI47_18465	0.72	-2.4
3,928,491	+		IAI47_18465	0.72	-0.4
3,928,491	+		IAI47_18465	0.72	+0.3
3,928,491	+		IAI47_18465	0.72	-0.8
3,928,492	-		IAI47_18465	0.72	-0.6
3,928,492	-		IAI47_18465	0.72	-0.6
3,928,492	-		IAI47_18465	0.72	-0.8
3,928,492	-		IAI47_18465	0.72	+0.8
3,928,498	-		IAI47_18465	0.73	-1.1
3,928,498	-		IAI47_18465	0.73	+2.8
3,928,512	-		IAI47_18465	0.75	+1.2
3,928,523	+		IAI47_18465	0.77	-1.3
3,928,523	+		IAI47_18465	0.77	+1.3
3,928,524	-		IAI47_18465	0.77	-2.0
3,928,579	+		IAI47_18465	0.84	+0.7
3,928,580	-		IAI47_18465	0.84	+2.1
3,928,644	+				-0.1
3,928,644	+				+1.9
3,928,644	+				+2.7
3,928,644	+				-0.8
3,928,645	-				+1.8
3,928,645	-				+0.3
3,928,645	-				+1.3
3,928,645	-				+0.2
3,928,685	+				+3.0
3,928,685	+				-1.1
3,928,686	-				-3.4
3,928,686	-				-1.2
3,928,686	-				-2.9
3,928,696	+				-0.5
3,928,696	+				+0.7
3,928,697	-				-1.8
3,928,697	-				+1.0
3,928,697	-				-0.0
3,928,697	-				+1.6
3,928,697	-				-2.5
3,928,697	-				-0.6
3,928,720	-				+0.3
3,928,782	+				-2.6
3,928,794	+				-0.7
3,928,794	+				-0.9
3,928,795	-				+1.5
3,928,795	-				+0.1
3,928,799	+				-2.6
3,928,799	+				-0.5
3,928,799	+				-2.4
3,928,799	+				-1.7
3,928,799	+				-0.9
3,928,799	+				-4.5
3,928,800	-				-1.6
3,928,800	-				-1.3
3,928,800	-				+1.1
3,928,800	-				-2.6
3,928,800	-				-3.0
3,928,800	-				-4.0
3,928,800	-				-0.4
3,928,800	-				-1.9
3,928,800	-				-3.6
3,928,800	-				-1.9
3,928,803	+				-3.9
3,928,803	+				-3.8
3,928,803	+				-1.8
3,928,803	+				-2.1
3,928,804	-				-1.9
3,928,892	+		IAI47_18470	0.13	-2.8
3,928,892	+		IAI47_18470	0.13	-2.7
3,928,892	+		IAI47_18470	0.13	-2.8
3,928,893	-		IAI47_18470	0.13	-1.7
3,928,896	+		IAI47_18470	0.13	-2.8
3,928,897	-		IAI47_18470	0.13	-2.4
3,928,966	+		IAI47_18470	0.18	-0.8
3,928,966	+		IAI47_18470	0.18	-2.7
3,928,967	-		IAI47_18470	0.18	-3.1
3,928,967	-		IAI47_18470	0.18	-3.4
3,928,989	-		IAI47_18470	0.20	-3.5
3,928,989	-		IAI47_18470	0.20	-3.9
3,929,058	+		IAI47_18470	0.25	-2.9
3,929,058	+		IAI47_18470	0.25	-0.9
3,929,058	+		IAI47_18470	0.25	-1.5
3,929,058	+		IAI47_18470	0.25	-2.9
3,929,059	-		IAI47_18470	0.25	-2.7
3,929,059	-		IAI47_18470	0.25	-2.6
3,929,059	-		IAI47_18470	0.25	-2.7
3,929,090	+		IAI47_18470	0.27	-1.2
3,929,113	+		IAI47_18470	0.29	-4.2
3,929,113	+		IAI47_18470	0.29	-1.5
3,929,113	+		IAI47_18470	0.29	-2.2
3,929,113	+		IAI47_18470	0.29	-2.5
3,929,113	+		IAI47_18470	0.29	-2.0
3,929,113	+		IAI47_18470	0.29	-1.1
3,929,113	+		IAI47_18470	0.29	+0.3
3,929,113	+		IAI47_18470	0.29	+0.1
3,929,114	-		IAI47_18470	0.29	-3.3
3,929,114	-		IAI47_18470	0.29	-3.3
3,929,114	-		IAI47_18470	0.29	-3.2
3,929,128	-		IAI47_18470	0.30	-2.5
3,929,128	-		IAI47_18470	0.30	-1.7
3,929,128	-		IAI47_18470	0.30	-2.2
3,929,224	+		IAI47_18470	0.37	-2.5
3,929,224	+		IAI47_18470	0.37	-2.6
3,929,224	+		IAI47_18470	0.37	-4.2
3,929,224	+		IAI47_18470	0.37	-3.1
3,929,224	+		IAI47_18470	0.37	-2.1
3,929,224	+		IAI47_18470	0.37	-1.4
3,929,224	+		IAI47_18470	0.37	-3.3
3,929,225	-		IAI47_18470	0.37	-3.8
3,929,225	-		IAI47_18470	0.37	-3.6
3,929,225	-		IAI47_18470	0.37	-2.6
3,929,225	-		IAI47_18470	0.37	-3.4
3,929,267	+		IAI47_18470	0.41	-1.1
3,929,267	+		IAI47_18470	0.41	-2.3
3,929,267	+		IAI47_18470	0.41	-1.6
3,929,267	+		IAI47_18470	0.41	-1.5
3,929,268	-		IAI47_18470	0.41	-4.0
3,929,268	-		IAI47_18470	0.41	-2.5
3,929,268	-		IAI47_18470	0.41	-2.3
3,929,268	-		IAI47_18470	0.41	-3.3
3,929,268	-		IAI47_18470	0.41	-3.8
3,929,281	+		IAI47_18470	0.42	-2.0
3,929,281	+		IAI47_18470	0.42	+1.9
3,929,281	+		IAI47_18470	0.42	-2.9
3,929,281	+		IAI47_18470	0.42	-2.7
3,929,282	-		IAI47_18470	0.42	-1.4
3,929,282	-		IAI47_18470	0.42	-3.8
3,929,291	+		IAI47_18470	0.42	-2.8
3,929,291	+		IAI47_18470	0.42	-1.8
3,929,291	+		IAI47_18470	0.42	-1.6
3,929,291	+		IAI47_18470	0.42	-0.6
3,929,292	-		IAI47_18470	0.42	-2.8
3,929,313	+		IAI47_18470	0.44	-4.2
3,929,313	+		IAI47_18470	0.44	-2.9
3,929,313	+		IAI47_18470	0.44	-2.4
3,929,313	+		IAI47_18470	0.44	-1.2
3,929,314	-		IAI47_18470	0.44	-2.6
3,929,314	-		IAI47_18470	0.44	-3.3
3,929,326	+		IAI47_18470	0.45	-2.8
3,929,326	+		IAI47_18470	0.45	-1.6
3,929,327	-		IAI47_18470	0.45	-1.9
3,929,327	-		IAI47_18470	0.45	-4.5
3,929,327	-		IAI47_18470	0.45	-3.3
3,929,327	-		IAI47_18470	0.45	-3.9
3,929,368	-		IAI47_18470	0.48	-4.0
3,929,444	+		IAI47_18470	0.54	-2.4
3,929,444	+		IAI47_18470	0.54	+1.1
3,929,444	+		IAI47_18470	0.54	-2.3
3,929,444	+		IAI47_18470	0.54	-3.2
3,929,444	+		IAI47_18470	0.54	-2.5
3,929,445	-		IAI47_18470	0.54	-3.0
3,929,445	-		IAI47_18470	0.54	-3.0
3,929,445	-		IAI47_18470	0.54	-2.8
3,929,450	+		IAI47_18470	0.54	-1.6
3,929,451	-		IAI47_18470	0.54	-3.1
3,929,479	+		IAI47_18470	0.56	-2.9
3,929,479	+		IAI47_18470	0.56	+1.1
3,929,479	+		IAI47_18470	0.56	-3.4
3,929,479	+		IAI47_18470	0.56	-3.4
3,929,480	-		IAI47_18470	0.56	-3.5
3,929,480	-		IAI47_18470	0.56	-2.9
3,929,480	-		IAI47_18470	0.56	-2.4
3,929,480	-		IAI47_18470	0.56	-4.5
3,929,574	-		IAI47_18470	0.63	-2.3
3,929,578	-		IAI47_18470	0.64	-3.6
3,929,582	-		IAI47_18470	0.64	-2.2
3,929,582	-		IAI47_18470	0.64	-3.4
3,929,582	-		IAI47_18470	0.64	-0.8
3,929,582	-		IAI47_18470	0.64	-2.9
3,929,582	-		IAI47_18470	0.64	-3.2
3,929,634	-		IAI47_18470	0.68	-2.6
3,929,635	+		IAI47_18470	0.68	-0.4
3,929,635	+		IAI47_18470	0.68	-2.7
3,929,635	+		IAI47_18470	0.68	-2.1
3,929,635	+		IAI47_18470	0.68	+3.0
3,929,635	+		IAI47_18470	0.68	-0.3
3,929,636	-		IAI47_18470	0.68	-0.4
3,929,636	-		IAI47_18470	0.68	-4.2
3,929,636	-		IAI47_18470	0.68	-3.1
3,929,798	+		IAI47_18470	0.80	-2.3
3,929,798	+		IAI47_18470	0.80	-2.1
3,929,798	+		IAI47_18470	0.80	+0.1
3,929,800	+		IAI47_18470	0.80	-0.3
3,929,800	+		IAI47_18470	0.80	+0.8
3,929,800	+		IAI47_18470	0.80	-2.2
3,929,800	+		IAI47_18470	0.80	-3.2
3,929,801	-		IAI47_18470	0.80	-2.1
3,929,801	-		IAI47_18470	0.80	-4.1
3,929,801	-		IAI47_18470	0.80	-3.7
3,929,809	+		IAI47_18470	0.81	-3.4
3,929,810	-		IAI47_18470	0.81	-3.2
3,929,810	-		IAI47_18470	0.81	-1.6
3,929,812	+		IAI47_18470	0.81	-2.6
3,929,812	+		IAI47_18470	0.81	-3.4
3,929,812	+		IAI47_18470	0.81	-0.8
3,929,812	+		IAI47_18470	0.81	-2.1
3,929,813	-		IAI47_18470	0.81	-2.3
3,929,813	-		IAI47_18470	0.81	-3.8
3,929,882	+		IAI47_18470	0.86	-1.6
3,929,883	-		IAI47_18470	0.86	-1.5
3,929,923	+		IAI47_18470	0.89	-1.5
3,929,924	-		IAI47_18470	0.89	-1.5
3,929,924	-		IAI47_18470	0.89	-2.7
3,929,924	-		IAI47_18470	0.89	-1.9
3,929,934	+				-3.1
3,929,934	+				-0.3
3,929,934	+				-1.3
3,929,934	+				-0.1
3,929,934	+				+1.6
3,929,934	+				-0.9
3,929,948	+				-2.1
3,929,948	+				+0.4
3,929,948	+				-1.3
3,929,948	+				-2.6
3,929,949	-				-3.6
3,929,949	-				-3.5
3,930,028	+				+0.6
3,930,028	+				-0.4
3,930,029	-				-1.9
3,930,029	-				-1.3
3,930,029	-				-2.1
3,930,056	+				-1.3
3,930,056	+				+1.7
3,930,056	+				-3.1
3,930,056	+				-1.4
3,930,056	+				-3.6
3,930,056	+				-0.9
3,930,056	+				+0.1
3,930,057	-				-3.4
3,930,057	-				-2.1
3,930,057	-				-2.2
3,930,057	-				-3.1
3,930,089	+				-1.8
3,930,090	-				+1.1
3,930,115	-				-1.4
3,930,145	+				+2.9
3,930,146	-				-0.3
3,930,199	+		IAI47_18475	0.13	-1.4
3,930,199	+		IAI47_18475	0.13	-0.8
3,930,199	+		IAI47_18475	0.13	-1.8
3,930,200	-		IAI47_18475	0.13	+0.5
3,930,200	-		IAI47_18475	0.13	-2.5
3,930,216	-		IAI47_18475	0.14	-1.7
3,930,216	-		IAI47_18475	0.14	+0.7
3,930,271	+		IAI47_18475	0.20	-2.1
3,930,272	-		IAI47_18475	0.20	-0.2
3,930,272	-		IAI47_18475	0.20	-1.4
3,930,334	+		IAI47_18475	0.25	+1.5
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