Strain Fitness in Pantoea sp. MT58 around IAI47_17720

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,763,698	+		IAI47_17715	0.59	+0.1
3,763,699	-		IAI47_17715	0.59	-2.6
3,763,744	+		IAI47_17715	0.61	+3.0
3,763,744	+		IAI47_17715	0.61	-0.2
3,763,744	+		IAI47_17715	0.61	-1.7
3,763,744	+		IAI47_17715	0.61	+0.9
3,763,744	+		IAI47_17715	0.61	+0.5
3,763,744	+		IAI47_17715	0.61	-0.8
3,763,744	+		IAI47_17715	0.61	-0.6
3,763,745	-		IAI47_17715	0.61	+0.3
3,763,745	-		IAI47_17715	0.61	+2.2
3,763,745	-		IAI47_17715	0.61	-0.1
3,763,745	-		IAI47_17715	0.61	-2.0
3,763,745	-		IAI47_17715	0.61	+0.3
3,763,745	-		IAI47_17715	0.61	-1.3
3,763,747	+		IAI47_17715	0.61	+1.4
3,763,747	+		IAI47_17715	0.61	+1.2
3,763,747	+		IAI47_17715	0.61	+1.6
3,763,747	+		IAI47_17715	0.61	-1.9
3,763,747	+		IAI47_17715	0.61	+0.6
3,763,748	-		IAI47_17715	0.61	-0.1
3,763,748	-		IAI47_17715	0.61	-2.8
3,763,748	-		IAI47_17715	0.61	+1.0
3,763,748	-		IAI47_17715	0.61	+1.5
3,763,748	-		IAI47_17715	0.61	-0.6
3,763,748	-		IAI47_17715	0.61	-1.5
3,763,761	+		IAI47_17715	0.62	+0.1
3,763,785	+		IAI47_17715	0.63	-1.3
3,763,786	-		IAI47_17715	0.63	+0.8
3,764,014	+		IAI47_17715	0.75	-2.1
3,764,014	+		IAI47_17715	0.75	-1.1
3,764,014	+		IAI47_17715	0.75	+0.8
3,764,014	+		IAI47_17715	0.75	-1.3
3,764,014	+		IAI47_17715	0.75	-0.6
3,764,014	+		IAI47_17715	0.75	-0.8
3,764,014	+		IAI47_17715	0.75	+0.5
3,764,014	+		IAI47_17715	0.75	+0.1
3,764,015	-		IAI47_17715	0.75	-0.8
3,764,015	-		IAI47_17715	0.75	+0.9
3,764,015	-		IAI47_17715	0.75	+0.8
3,764,015	-		IAI47_17715	0.75	-1.2
3,764,015	-		IAI47_17715	0.75	+0.9
3,764,015	-		IAI47_17715	0.75	-1.4
3,764,015	-		IAI47_17715	0.75	+0.9
3,764,015	-		IAI47_17715	0.75	+1.4
3,764,015	-		IAI47_17715	0.75	+0.1
3,764,015	-		IAI47_17715	0.75	-1.6
3,764,022	+		IAI47_17715	0.75	+1.7
3,764,022	+		IAI47_17715	0.75	-1.1
3,764,022	+		IAI47_17715	0.75	+2.2
3,764,022	+		IAI47_17715	0.75	+1.4
3,764,022	+		IAI47_17715	0.75	+0.2
3,764,023	-		IAI47_17715	0.75	+1.9
3,764,028	+		IAI47_17715	0.75	-1.8
3,764,029	-		IAI47_17715	0.75	-1.0
3,764,029	-		IAI47_17715	0.75	+1.0
3,764,077	+		IAI47_17715	0.78	-1.5
3,764,077	+		IAI47_17715	0.78	+0.3
3,764,077	+		IAI47_17715	0.78	+2.4
3,764,077	+		IAI47_17715	0.78	-0.1
3,764,077	+		IAI47_17715	0.78	+0.7
3,764,077	+		IAI47_17715	0.78	-0.6
3,764,078	-		IAI47_17715	0.78	-0.1
3,764,080	+		IAI47_17715	0.78	+3.5
3,764,080	+		IAI47_17715	0.78	+1.4
3,764,080	+		IAI47_17715	0.78	-2.7
3,764,081	-		IAI47_17715	0.78	+0.6
3,764,081	-		IAI47_17715	0.78	+0.6
3,764,081	-		IAI47_17715	0.78	+1.0
3,764,173	-		IAI47_17715	0.83	-0.2
3,764,230	+		IAI47_17715	0.86	+1.8
3,764,230	+		IAI47_17715	0.86	+0.4
3,764,230	+		IAI47_17715	0.86	-1.3
3,764,230	+		IAI47_17715	0.86	-0.9
3,764,230	+		IAI47_17715	0.86	+0.2
3,764,230	+		IAI47_17715	0.86	-0.8
3,764,230	+		IAI47_17715	0.86	-1.8
3,764,230	+		IAI47_17715	0.86	+1.8
3,764,230	+		IAI47_17715	0.86	-1.5
3,764,231	-		IAI47_17715	0.86	+0.9
3,764,231	-		IAI47_17715	0.86	-0.8
3,764,231	-		IAI47_17715	0.86	-0.6
3,764,231	-				-2.0
3,764,231	-		IAI47_17715	0.86	+0.8
3,764,231	-		IAI47_17715	0.86	+0.6
3,764,231	-		IAI47_17715	0.86	+0.1
3,764,231	-		IAI47_17715	0.86	+1.5
3,764,231	-		IAI47_17715	0.86	+1.1
3,764,236	+		IAI47_17715	0.86	+1.0
3,764,236	+		IAI47_17715	0.86	-1.3
3,764,236	+		IAI47_17715	0.86	-0.6
3,764,236	+		IAI47_17715	0.86	+1.2
3,764,236	+		IAI47_17715	0.86	+0.2
3,764,236	+		IAI47_17715	0.86	-2.7
3,764,236	+		IAI47_17715	0.86	+0.4
3,764,236	+		IAI47_17715	0.86	-0.6
3,764,237	-		IAI47_17715	0.86	-1.4
3,764,237	-		IAI47_17715	0.86	-1.7
3,764,237	-		IAI47_17715	0.86	+0.6
3,764,237	-		IAI47_17715	0.86	+1.4
3,764,237	-		IAI47_17715	0.86	-0.3
3,764,237	-		IAI47_17715	0.86	-0.6
3,764,237	-		IAI47_17715	0.86	-2.1
3,764,237	-		IAI47_17715	0.86	-1.7
3,764,237	-		IAI47_17715	0.86	+0.5
3,764,237	-		IAI47_17715	0.86	+1.3
3,764,237	-		IAI47_17715	0.86	-0.2
3,764,237	-		IAI47_17715	0.86	+0.1
3,764,237	-		IAI47_17715	0.86	+1.7
3,764,238	+		IAI47_17715	0.86	-0.2
3,764,238	+		IAI47_17715	0.86	+0.5
3,764,238	+		IAI47_17715	0.86	+1.6
3,764,238	+		IAI47_17715	0.86	-1.9
3,764,238	+		IAI47_17715	0.86	+2.3
3,764,239	-		IAI47_17715	0.86	-1.6
3,764,239	-		IAI47_17715	0.86	+1.4
3,764,239	-		IAI47_17715	0.86	-1.7
3,764,278	+		IAI47_17715	0.88	-0.3
3,764,278	+		IAI47_17715	0.88	-1.3
3,764,278	+		IAI47_17715	0.88	-1.8
3,764,278	+		IAI47_17715	0.88	-0.7
3,764,278	+		IAI47_17715	0.88	+0.4
3,764,278	+		IAI47_17715	0.88	+1.1
3,764,279	-		IAI47_17715	0.88	+1.3
3,764,279	-		IAI47_17715	0.88	+1.6
3,764,279	-		IAI47_17715	0.88	+0.8
3,764,279	-		IAI47_17715	0.88	-0.5
3,764,392	-				-1.6
3,764,392	-				-1.5
3,764,418	+				-2.3
3,764,419	-				+0.1
3,764,436	+				-0.3
3,764,436	+				-1.1
3,764,436	+				+0.7
3,764,436	+				-0.3
3,764,436	+				+0.1
3,764,436	+				+0.7
3,764,436	+				+1.2
3,764,436	+				+0.1
3,764,436	+				-1.6
3,764,437	-				-1.7
3,764,437	-				-0.3
3,764,437	-				+0.4
3,764,437	-				+0.1
3,764,462	+				-0.1
3,764,463	-				-0.4
3,764,506	+				-1.2
3,764,507	-				-2.6
3,764,507	-				-0.4
3,764,581	+				-0.9
3,764,581	+				+0.1
3,764,581	+				+1.5
3,764,581	+				+0.7
3,764,582	-				-0.7
3,764,582	-				-1.2
3,764,582	-				+2.1
3,764,582	-				-1.4
3,764,582	-				+0.0
3,764,584	+				-0.9
3,764,584	+				+0.3
3,764,584	+				-0.8
3,764,584	+				+0.6
3,764,585	-				-2.0
3,764,585	-				+0.9
3,764,585	-				-1.1
3,764,585	-				+0.6
3,764,585	-				-0.2
3,764,586	+				-1.1
3,764,587	-				+0.4
3,764,587	-				+0.8
3,764,699	+		IAI47_17720	0.15	-0.6
3,764,699	+		IAI47_17720	0.15	-1.6
3,764,700	-		IAI47_17720	0.15	-0.2
3,764,719	+		IAI47_17720	0.21	+0.5
3,764,719	+		IAI47_17720	0.21	+0.5
3,764,720	-		IAI47_17720	0.22	-0.6
3,764,720	-		IAI47_17720	0.22	+0.9
3,764,726	+		IAI47_17720	0.23	-0.2
3,764,727	-		IAI47_17720	0.24	+0.4
3,764,762	+		IAI47_17720	0.34	-0.4
3,764,762	+		IAI47_17720	0.34	+0.4
3,764,762	+		IAI47_17720	0.34	-0.6
3,764,762	+		IAI47_17720	0.34	+1.3
3,764,762	+		IAI47_17720	0.34	-1.0
3,764,762	+		IAI47_17720	0.34	-0.3
3,764,762	+		IAI47_17720	0.34	-1.6
3,764,762	+		IAI47_17720	0.34	+0.1
3,764,763	-		IAI47_17720	0.35	-2.0
3,764,763	-		IAI47_17720	0.35	-1.3
3,764,763	-		IAI47_17720	0.35	+2.3
3,764,775	+		IAI47_17720	0.38	-0.4
3,764,775	+		IAI47_17720	0.38	-1.8
3,764,775	+		IAI47_17720	0.38	-0.1
3,764,775	+		IAI47_17720	0.38	-1.3
3,764,775	+		IAI47_17720	0.38	+1.2
3,764,775	+		IAI47_17720	0.38	-1.8
3,764,775	+		IAI47_17720	0.38	-2.1
3,764,775	+		IAI47_17720	0.38	-3.0
3,764,775	+		IAI47_17720	0.38	-0.5
3,764,776	-		IAI47_17720	0.38	+0.0
3,764,776	-		IAI47_17720	0.38	-1.5
3,764,776	-		IAI47_17720	0.38	+2.3
3,764,776	-		IAI47_17720	0.38	-0.3
3,764,776	-		IAI47_17720	0.38	+1.2
3,764,776	-		IAI47_17720	0.38	-0.2
3,764,776	-		IAI47_17720	0.38	+0.8
3,764,786	+		IAI47_17720	0.42	-1.4
3,764,910	+		IAI47_17720	0.79	+1.1
3,764,910	+		IAI47_17720	0.79	+0.2
3,764,910	+		IAI47_17720	0.79	+2.1
3,764,910	+		IAI47_17720	0.79	-1.2
3,764,910	+		IAI47_17720	0.79	-0.1
3,764,910	+		IAI47_17720	0.79	-0.3
3,764,910	+		IAI47_17720	0.79	-1.5
3,764,911	-		IAI47_17720	0.79	+2.3
3,764,911	-		IAI47_17720	0.79	-1.1
3,764,911	-		IAI47_17720	0.79	-0.1
3,764,911	-		IAI47_17720	0.79	-1.4
3,764,911	-		IAI47_17720	0.79	+1.8
3,764,911	-		IAI47_17720	0.79	-0.2
3,764,944	+		IAI47_17720	0.89	-0.4
3,764,945	-		IAI47_17720	0.90	-0.7
3,764,991	+				-1.6
3,764,991	+				+0.7
3,764,991	+				+2.5
3,764,991	+				-0.5
3,764,991	+				+0.1
3,764,992	-				+1.2
3,764,992	-				+0.4
3,764,992	-				+0.7
3,764,998	-				+1.0
3,765,043	+				-0.3
3,765,074	+				+1.5
3,765,074	+				-2.1
3,765,074	+				+2.4
3,765,074	+				-1.6
3,765,074	+				-0.1
3,765,075	-				-1.4
3,765,075	-				-1.7
3,765,075	-				-0.5
3,765,075	-				-0.9
3,765,075	-				+0.0
3,765,075	-				+0.5
3,765,085	+				-1.6
3,765,085	+				+1.1
3,765,085	+				-2.0
3,765,085	+				+2.0
3,765,085	+				+0.8
3,765,086	-				+1.6
3,765,086	-				-1.8
3,765,086	-				-0.5
3,765,094	+				-2.3
3,765,124	+				-1.6
3,765,124	+				+0.9
3,765,124	-				+1.2
3,765,125	-				+0.3
3,765,125	-				-0.8
3,765,128	+				-0.3
3,765,128	+				+0.5
3,765,128	+				-1.7
3,765,128	+				-3.5
3,765,128	+				-0.2
3,765,128	+				+0.6
3,765,129	-				+0.3
3,765,129	-				-0.0
3,765,129	-				-2.7
3,765,164	+		IAI47_17725	0.11	+0.6
3,765,164	+		IAI47_17725	0.11	+1.3
3,765,164	+		IAI47_17725	0.11	+1.1
3,765,164	+		IAI47_17725	0.11	-0.7
3,765,164	+		IAI47_17725	0.11	+0.1
3,765,164	+		IAI47_17725	0.11	+0.0
3,765,164	+		IAI47_17725	0.11	+1.2
3,765,164	+		IAI47_17725	0.11	-1.4
3,765,165	-		IAI47_17725	0.11	+0.4
3,765,165	-		IAI47_17725	0.11	-0.3
3,765,165	-		IAI47_17725	0.11	-1.9
3,765,165	-		IAI47_17725	0.11	-0.3
3,765,167	+		IAI47_17725	0.12	+1.1
3,765,167	+		IAI47_17725	0.12	-1.8
3,765,167	+		IAI47_17725	0.12	-1.7
3,765,167	+		IAI47_17725	0.12	+0.9
3,765,167	+		IAI47_17725	0.12	+0.2
3,765,167	+		IAI47_17725	0.12	-1.2
3,765,167	+		IAI47_17725	0.12	-2.4
3,765,167	+		IAI47_17725	0.12	+0.7
3,765,167	+		IAI47_17725	0.12	-0.1
3,765,167	+		IAI47_17725	0.12	-1.3
3,765,167	+		IAI47_17725	0.12	-2.2
3,765,167	+		IAI47_17725	0.12	-0.2
3,765,168	-		IAI47_17725	0.12	+1.0
3,765,168	-		IAI47_17725	0.12	-0.3
3,765,168	-		IAI47_17725	0.12	+0.2
3,765,168	-		IAI47_17725	0.12	+0.2
3,765,168	-		IAI47_17725	0.12	-0.6
3,765,184	+		IAI47_17725	0.13	-1.9
3,765,184	+		IAI47_17725	0.13	+0.7
3,765,185	-		IAI47_17725	0.13	+1.6
3,765,266	+		IAI47_17725	0.18	+0.3
3,765,266	+		IAI47_17725	0.18	+0.9
3,765,267	-		IAI47_17725	0.18	+2.1
3,765,267	-		IAI47_17725	0.18	-1.1
3,765,267	-		IAI47_17725	0.18	-3.3
3,765,267	-		IAI47_17725	0.18	-0.4
3,765,293	+		IAI47_17725	0.19	+2.1
3,765,294	-		IAI47_17725	0.19	+0.0
3,765,294	-		IAI47_17725	0.19	-1.6
3,765,294	-		IAI47_17725	0.19	+0.3
3,765,294	-		IAI47_17725	0.19	+2.0
3,765,336	+		IAI47_17725	0.22	-0.4
3,765,368	+		IAI47_17725	0.24	-2.2
3,765,368	+		IAI47_17725	0.24	+2.2
3,765,368	+		IAI47_17725	0.24	+1.6
3,765,370	+		IAI47_17725	0.24	-0.7
3,765,370	+		IAI47_17725	0.24	-1.4
3,765,370	+		IAI47_17725	0.24	-1.4
3,765,370	+		IAI47_17725	0.24	-0.7
3,765,370	+		IAI47_17725	0.24	+0.7
3,765,371	-		IAI47_17725	0.24	-1.0
3,765,371	-		IAI47_17725	0.24	+1.3
3,765,371	-		IAI47_17725	0.24	+0.8
3,765,371	-		IAI47_17725	0.24	-2.0
3,765,371	-		IAI47_17725	0.24	+0.6
3,765,371	-		IAI47_17725	0.24	+1.4
3,765,371	-		IAI47_17725	0.24	-0.7
3,765,371	-		IAI47_17725	0.24	+0.5
3,765,371	-		IAI47_17725	0.24	-3.2
3,765,371	-		IAI47_17725	0.24	-1.9
3,765,392	+		IAI47_17725	0.25	+2.0
3,765,392	+		IAI47_17725	0.25	-1.6
3,765,392	+		IAI47_17725	0.25	+0.8
3,765,392	+		IAI47_17725	0.25	+0.5
3,765,393	-		IAI47_17725	0.25	-0.6
3,765,458	+		IAI47_17725	0.29	-0.9
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