Strain Fitness in Pantoea sp. MT58 around IAI47_17640

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,742,275	+		IAI47_17635	0.45	-0.8
3,742,276	-		IAI47_17635	0.45	-0.4
3,742,302	+		IAI47_17635	0.47	+1.4
3,742,302	+		IAI47_17635	0.47	-1.4
3,742,302	+		IAI47_17635	0.47	+0.2
3,742,303	-		IAI47_17635	0.47	-2.0
3,742,327	+		IAI47_17635	0.48	-1.1
3,742,328	-		IAI47_17635	0.49	-1.7
3,742,342	-		IAI47_17635	0.49	+1.0
3,742,342	-		IAI47_17635	0.49	+0.3
3,742,390	+		IAI47_17635	0.53	-0.8
3,742,390	+		IAI47_17635	0.53	-1.3
3,742,390	+		IAI47_17635	0.53	+0.2
3,742,390	+		IAI47_17635	0.53	+2.2
3,742,391	-		IAI47_17635	0.53	+0.4
3,742,432	+		IAI47_17635	0.56	+1.3
3,742,432	+		IAI47_17635	0.56	+1.5
3,742,433	-		IAI47_17635	0.56	+1.1
3,742,433	-		IAI47_17635	0.56	+0.1
3,742,446	+		IAI47_17635	0.57	+0.3
3,742,446	+		IAI47_17635	0.57	-1.4
3,742,446	+		IAI47_17635	0.57	+0.3
3,742,447	-		IAI47_17635	0.57	-1.0
3,742,447	-		IAI47_17635	0.57	-1.6
3,742,447	-		IAI47_17635	0.57	+1.1
3,742,447	-		IAI47_17635	0.57	-1.3
3,742,447	-		IAI47_17635	0.57	-1.7
3,742,447	-		IAI47_17635	0.57	-0.1
3,742,519	+		IAI47_17635	0.62	+2.2
3,742,519	+		IAI47_17635	0.62	-0.9
3,742,519	+		IAI47_17635	0.62	+1.9
3,742,520	-		IAI47_17635	0.62	+0.7
3,742,520	-		IAI47_17635	0.62	+0.3
3,742,520	-		IAI47_17635	0.62	-0.6
3,742,520	-		IAI47_17635	0.62	-1.3
3,742,559	-		IAI47_17635	0.65	-0.8
3,742,559	-		IAI47_17635	0.65	+4.6
3,742,559	-		IAI47_17635	0.65	+2.3
3,742,585	+		IAI47_17635	0.66	-1.5
3,742,585	+		IAI47_17635	0.66	-0.4
3,742,586	-		IAI47_17635	0.66	+1.6
3,742,719	+		IAI47_17635	0.76	-3.1
3,742,720	-		IAI47_17635	0.76	-0.1
3,742,720	-		IAI47_17635	0.76	+3.6
3,742,748	-		IAI47_17635	0.78	-0.5
3,742,748	-		IAI47_17635	0.78	-0.7
3,742,748	-		IAI47_17635	0.78	+1.2
3,742,755	+		IAI47_17635	0.78	+0.8
3,742,771	+		IAI47_17635	0.79	-1.1
3,742,771	+		IAI47_17635	0.79	-0.4
3,742,771	+		IAI47_17635	0.79	-1.8
3,742,771	+		IAI47_17635	0.79	+0.0
3,742,772	-		IAI47_17635	0.79	-0.3
3,742,772	-		IAI47_17635	0.79	+2.6
3,742,772	-		IAI47_17635	0.79	-1.6
3,742,772	-		IAI47_17635	0.79	-3.3
3,742,839	+		IAI47_17635	0.84	+1.7
3,742,840	-		IAI47_17635	0.84	-1.2
3,742,902	+		IAI47_17635	0.88	+2.3
3,742,902	+		IAI47_17635	0.88	+0.4
3,742,903	-		IAI47_17635	0.88	+2.1
3,742,903	-		IAI47_17635	0.88	-1.4
3,742,946	+				+0.3
3,742,946	+				+1.1
3,742,946	+				-0.3
3,742,946	+				+4.0
3,742,947	-				-2.4
3,742,947	-				-0.6
3,742,947	-				-1.5
3,743,020	+				+1.0
3,743,020	+				-2.4
3,743,020	+				-0.9
3,743,020	+				-0.6
3,743,020	+				+1.7
3,743,020	+				-0.2
3,743,020	+				-0.0
3,743,020	+				-1.8
3,743,020	+				-0.6
3,743,020	+				-1.4
3,743,021	-				+1.2
3,743,021	-				-2.0
3,743,021	-				-0.4
3,743,021	-				+1.2
3,743,021	-				+2.6
3,743,021	-				+6.3
3,743,021	-				+1.5
3,743,021	-				+1.0
3,743,021	-				-1.8
3,743,021	-				-1.4
3,743,021	-				+0.8
3,743,022	+				-1.5
3,743,022	+				+0.2
3,743,022	+				-2.3
3,743,022	+				+0.1
3,743,022	+				+1.3
3,743,022	+				-2.6
3,743,022	+				+0.9
3,743,022	+				-0.3
3,743,022	+				+3.3
3,743,022	+				-0.8
3,743,022	+				-2.3
3,743,023	-				+0.7
3,743,023	-				+1.7
3,743,023	-				+2.3
3,743,023	-				-0.3
3,743,023	-				-1.8
3,743,023	-				-0.3
3,743,023	-				-1.4
3,743,023	-				-0.2
3,743,023	-				+0.5
3,743,023	-				+1.9
3,743,023	-				-0.7
3,743,023	-				-1.9
3,743,023	-				-0.8
3,743,023	-				-0.8
3,743,023	-				-0.9
3,743,101	+				-1.7
3,743,101	+				-0.5
3,743,103	+				-0.3
3,743,103	+				+1.0
3,743,103	+				-3.5
3,743,104	-				-1.0
3,743,109	+				-0.8
3,743,110	-				-0.9
3,743,164	+				+1.1
3,743,164	+				+2.7
3,743,164	+				-1.2
3,743,164	+				-0.3
3,743,165	-				-2.1
3,743,165	-				+0.3
3,743,165	-				-1.1
3,743,166	+				+0.3
3,743,166	+				+1.6
3,743,166	+				+0.9
3,743,166	+				-1.8
3,743,166	+				+1.3
3,743,166	+				+0.6
3,743,166	+				+1.4
3,743,166	+				-0.4
3,743,166	+				+0.4
3,743,166	+				+0.4
3,743,166	+				-0.6
3,743,166	+				-1.5
3,743,166	+				+2.9
3,743,167	-				-0.1
3,743,167	-				-1.6
3,743,167	-				-0.6
3,743,167	-				+3.3
3,743,167	-				+0.6
3,743,167	-				-0.8
3,743,167	-				+3.2
3,743,167	-				+0.5
3,743,167	-				-1.4
3,743,227	-				-0.8
3,743,227	-				+2.4
3,743,227	-				-1.3
3,743,295	+				-0.8
3,743,296	-				+1.0
3,743,296	-				+2.0
3,743,296	-				+0.4
3,743,315	+				-2.3
3,743,315	+				-2.0
3,743,315	+				-2.0
3,743,316	-				+1.6
3,743,316	-				+0.4
3,743,316	-				-2.6
3,743,316	-				-1.4
3,743,326	+				-1.4
3,743,326	+				-0.7
3,743,327	-				-0.6
3,743,362	-				-0.8
3,743,362	-				+1.9
3,743,397	+		IAI47_17640	0.11	-0.6
3,743,463	+		IAI47_17640	0.15	-0.7
3,743,463	+		IAI47_17640	0.15	-1.4
3,743,463	+		IAI47_17640	0.15	+0.5
3,743,464	-		IAI47_17640	0.15	-0.5
3,743,464	-		IAI47_17640	0.15	-1.8
3,743,464	-		IAI47_17640	0.15	+0.0
3,743,552	+		IAI47_17640	0.21	+0.2
3,743,552	+		IAI47_17640	0.21	-0.7
3,743,553	-		IAI47_17640	0.21	+2.1
3,743,605	+		IAI47_17640	0.25	-0.2
3,743,605	+		IAI47_17640	0.25	+1.3
3,743,605	+		IAI47_17640	0.25	-1.2
3,743,605	+		IAI47_17640	0.25	+2.6
3,743,605	+		IAI47_17640	0.25	-1.7
3,743,605	+		IAI47_17640	0.25	-2.2
3,743,605	+		IAI47_17640	0.25	+1.6
3,743,605	+		IAI47_17640	0.25	+0.4
3,743,605	+		IAI47_17640	0.25	-0.5
3,743,605	+		IAI47_17640	0.25	+0.7
3,743,605	+		IAI47_17640	0.25	+0.4
3,743,605	+		IAI47_17640	0.25	-0.8
3,743,605	+		IAI47_17640	0.25	-0.3
3,743,606	-		IAI47_17640	0.25	-0.3
3,743,606	-		IAI47_17640	0.25	-0.4
3,743,606	-		IAI47_17640	0.25	+0.8
3,743,606	-		IAI47_17640	0.25	+0.2
3,743,606	-		IAI47_17640	0.25	+0.7
3,743,606	-		IAI47_17640	0.25	+1.3
3,743,606	-		IAI47_17640	0.25	+0.7
3,743,606	-		IAI47_17640	0.25	+2.6
3,743,606	-		IAI47_17640	0.25	-1.9
3,743,606	-		IAI47_17640	0.25	+0.6
3,743,606	-		IAI47_17640	0.25	-1.6
3,743,606	-		IAI47_17640	0.25	+2.5
3,743,607	+		IAI47_17640	0.25	-1.0
3,743,607	+		IAI47_17640	0.25	+0.6
3,743,607	+		IAI47_17640	0.25	-1.1
3,743,607	+		IAI47_17640	0.25	-1.1
3,743,607	+		IAI47_17640	0.25	-2.8
3,743,607	+		IAI47_17640	0.25	-0.2
3,743,607	+		IAI47_17640	0.25	+2.6
3,743,607	+		IAI47_17640	0.25	-0.8
3,743,607	+		IAI47_17640	0.25	+0.9
3,743,607	+		IAI47_17640	0.25	+0.0
3,743,607	+		IAI47_17640	0.25	-0.0
3,743,607	+		IAI47_17640	0.25	+0.8
3,743,607	+		IAI47_17640	0.25	-1.7
3,743,607	+		IAI47_17640	0.25	+0.2
3,743,607	+		IAI47_17640	0.25	+1.1
3,743,607	+		IAI47_17640	0.25	-1.6
3,743,607	+		IAI47_17640	0.25	+1.8
3,743,607	+		IAI47_17640	0.25	+0.3
3,743,607	+		IAI47_17640	0.25	-1.7
3,743,607	+		IAI47_17640	0.25	-2.3
3,743,607	+		IAI47_17640	0.25	-2.5
3,743,608	-		IAI47_17640	0.25	+2.4
3,743,608	-		IAI47_17640	0.25	+0.0
3,743,608	-		IAI47_17640	0.25	+1.5
3,743,608	-		IAI47_17640	0.25	-0.1
3,743,608	-		IAI47_17640	0.25	+1.5
3,743,608	-		IAI47_17640	0.25	+0.9
3,743,608	-		IAI47_17640	0.25	-1.4
3,743,608	-		IAI47_17640	0.25	-2.2
3,743,608	-		IAI47_17640	0.25	-0.8
3,743,608	-		IAI47_17640	0.25	-1.3
3,743,608	-		IAI47_17640	0.25	-2.1
3,743,619	+		IAI47_17640	0.26	-0.4
3,743,637	+		IAI47_17640	0.27	-0.4
3,743,637	+		IAI47_17640	0.27	-1.4
3,743,638	-		IAI47_17640	0.27	+0.8
3,743,638	-		IAI47_17640	0.27	-0.2
3,743,820	+		IAI47_17640	0.39	+2.0
3,743,820	+		IAI47_17640	0.39	-1.3
3,743,835	+		IAI47_17640	0.40	+0.8
3,743,871	+		IAI47_17640	0.42	-2.3
3,743,900	+		IAI47_17640	0.44	+0.4
3,743,900	+		IAI47_17640	0.44	+0.3
3,743,922	+		IAI47_17640	0.46	+1.0
3,743,922	+		IAI47_17640	0.46	-1.0
3,743,923	-		IAI47_17640	0.46	-0.9
3,743,923	-		IAI47_17640	0.46	+1.8
3,744,120	+		IAI47_17640	0.59	-0.0
3,744,121	-		IAI47_17640	0.59	-1.6
3,744,121	-		IAI47_17640	0.59	+1.3
3,744,175	+		IAI47_17640	0.62	+0.8
3,744,176	-		IAI47_17640	0.62	-0.2
3,744,214	-		IAI47_17640	0.65	+3.1
3,744,214	-		IAI47_17640	0.65	-0.7
3,744,214	-		IAI47_17640	0.65	-1.5
3,744,258	+		IAI47_17640	0.68	+2.2
3,744,259	-		IAI47_17640	0.68	+0.4
3,744,259	-		IAI47_17640	0.68	+4.0
3,744,259	-		IAI47_17640	0.68	+1.6
3,744,417	+		IAI47_17640	0.78	+0.9
3,744,417	+		IAI47_17640	0.78	+0.6
3,744,417	+		IAI47_17640	0.78	-2.3
3,744,417	+		IAI47_17640	0.78	+0.5
3,744,417	+		IAI47_17640	0.78	+1.0
3,744,418	-		IAI47_17640	0.78	+0.1
3,744,418	-		IAI47_17640	0.78	-1.6
3,744,418	-		IAI47_17640	0.78	+0.5
3,744,418	-		IAI47_17640	0.78	+1.4
3,744,418	-		IAI47_17640	0.78	-0.6
3,744,418	-		IAI47_17640	0.78	-1.3
3,744,423	+		IAI47_17640	0.79	+1.7
3,744,480	+		IAI47_17640	0.82	-0.9
3,744,480	+		IAI47_17640	0.82	-1.3
3,744,481	-		IAI47_17640	0.82	+2.4
3,744,481	-		IAI47_17640	0.82	+1.9
3,744,628	+				+1.3
3,744,628	+				+0.2
3,744,628	+				-2.0
3,744,628	+				+0.6
3,744,629	-				-1.6
3,744,629	-				-2.5
3,744,629	-				-1.2
3,744,629	-				-0.8
3,744,629	-				+0.6
3,744,631	+				+0.0
3,744,631	+				+1.2
3,744,631	+				-0.8
3,744,631	+				+2.1
3,744,631	+				-1.1
3,744,631	+				-0.2
3,744,631	+				-1.8
3,744,632	-				+0.5
3,744,632	-				+0.3
3,744,632	-				+2.7
3,744,666	+				+2.5
3,744,667	-				+0.8
3,744,667	-				+0.2
3,744,697	+				+1.4
3,744,697	+				+0.4
3,744,698	-				+0.1
3,744,698	-				+1.3
3,744,745	+				-1.3
3,744,745	+				-1.1
3,744,745	+				-0.8
3,744,745	+				+0.6
3,744,746	-				+0.1
3,744,746	-				+1.4
3,744,746	-				+0.1
3,744,773	+		IAI47_17645	0.14	+0.6
3,744,857	+		IAI47_17645	0.55	-0.3
3,744,857	+		IAI47_17645	0.55	-1.1
3,744,857	+		IAI47_17645	0.55	-0.8
3,744,857	+		IAI47_17645	0.55	-1.3
3,744,857	+		IAI47_17645	0.55	-1.2
3,744,858	-		IAI47_17645	0.56	-2.5
3,744,858	-		IAI47_17645	0.56	+1.4
3,744,859	+		IAI47_17645	0.56	-1.0
3,744,966	+				+1.0
3,745,032	+				+1.2
3,745,032	+				+0.7
3,745,032	+				-2.7
3,745,032	+				+0.5
3,745,032	+				+0.6
3,745,032	+				-1.1
3,745,032	+				+0.5
3,745,032	+				+2.0
3,745,033	-				-1.2
3,745,033	-				+1.2
3,745,033	-				+1.1
3,745,033	-				-1.9
3,745,033	-				+0.5
3,745,033	-				+1.3
3,745,148	+				-1.6
3,745,148	+				-1.7
3,745,149	-				+0.2
3,745,149	-				+0.1
3,745,149	-				-2.2
3,745,180	+				+1.7
3,745,180	+				+2.2
3,745,180	+				-0.2
3,745,180	+				+0.6
3,745,180	+				+1.8
3,745,180	+				+1.1
3,745,180	+				-1.2
3,745,180	+				+0.8
3,745,181	-				-0.6
3,745,181	-				-0.2
3,745,181	-				+0.4
3,745,181	-				-2.4
3,745,181	-				-3.0
3,745,181	-				+1.4
3,745,181	-				+0.1
3,745,181	-				-2.7
3,745,181	-				-1.9
3,745,188	+				+0.7
3,745,188	+				+0.0
3,745,189	-				-1.1
3,745,189	-				-1.1
3,745,189	-				+0.2
3,745,233	+				+2.6
3,745,233	+				-1.7
3,745,234	-				+1.6
3,745,234	-				-1.7
3,745,256	+				+0.0
3,745,263	+				+0.1
3,745,272	+				+1.0
3,745,273	-				+0.7
3,745,273	-				-0.4
3,745,273	-				-1.2
3,745,279	+				-1.6
3,745,279	+				+1.6
3,745,279	+				-2.5
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3,745,280	-				-1.1
3,745,280	-				-0.3
3,745,337	+				-1.4
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3,745,338	-				+0.2
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3,745,338	-				+0.6
3,745,346	+				+0.1
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3,745,347	-				+0.6
3,745,347	-				-0.8
3,745,390	+				+2.1
3,745,391	-				-1.8
3,745,439	+				-0.6
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3,745,440	-				+0.1
3,745,442	+				-0.7
3,745,477	-		IAI47_17650	0.10	+1.7
3,745,497	+				-2.0
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3,745,498	-		IAI47_17650	0.12	-0.8
3,745,499	+		IAI47_17650	0.12	+0.3
3,745,499	+		IAI47_17650	0.12	-1.2
3,745,499	+		IAI47_17650	0.12	+1.0
3,745,500	-		IAI47_17650	0.12	+1.3
3,745,632	+		IAI47_17650	0.21	-3.2
3,745,633	-		IAI47_17650	0.22	+2.8
3,745,633	-		IAI47_17650	0.22	-1.6
3,745,633	-		IAI47_17650	0.22	-1.8
3,745,664	+		IAI47_17650	0.24	+1.0
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3,745,664	+		IAI47_17650	0.24	+1.8
3,745,664	+		IAI47_17650	0.24	-2.9
3,745,664	+		IAI47_17650	0.24	-2.8
3,745,664	+		IAI47_17650	0.24	-1.3
3,745,664	+		IAI47_17650	0.24	-1.9
3,745,664	+		IAI47_17650	0.24	+2.4
3,745,664	+		IAI47_17650	0.24	+1.9
3,745,664	+		IAI47_17650	0.24	-3.0
3,745,665	-		IAI47_17650	0.24	-1.9
3,745,665	-		IAI47_17650	0.24	-2.3
3,745,665	-		IAI47_17650	0.24	+1.0
3,745,665	-		IAI47_17650	0.24	-1.2
3,745,665	-		IAI47_17650	0.24	+2.2
3,745,665	-		IAI47_17650	0.24	-1.0
3,745,665	-		IAI47_17650	0.24	+0.4
3,745,665	-		IAI47_17650	0.24	+1.7
3,745,684	-		IAI47_17650	0.25	-1.2
3,745,733	+		IAI47_17650	0.29	-2.7
3,745,733	+		IAI47_17650	0.29	-1.5
3,745,733	+		IAI47_17650	0.29	-2.1
3,745,734	-		IAI47_17650	0.29	+0.5
3,745,734	-		IAI47_17650	0.29	+1.8
3,745,734	-		IAI47_17650	0.29	-1.1
3,745,734	-		IAI47_17650	0.29	-0.9
3,745,734	-		IAI47_17650	0.29	-1.4