Strain Fitness in Pantoea sp. MT58 around IAI47_16320

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,458,930	+		IAI47_16315	0.41	+2.7
3,458,931	-		IAI47_16315	0.41	-0.1
3,458,953	+		IAI47_16315	0.43	+1.0
3,458,953	+		IAI47_16315	0.43	+1.5
3,458,953	+		IAI47_16315	0.43	+1.0
3,458,953	+		IAI47_16315	0.43	-0.2
3,458,953	+		IAI47_16315	0.43	+0.5
3,458,954	-		IAI47_16315	0.43	+0.5
3,459,034	+		IAI47_16315	0.52	+0.7
3,459,034	+		IAI47_16315	0.52	+0.2
3,459,034	+		IAI47_16315	0.52	-1.1
3,459,034	+		IAI47_16315	0.52	-0.2
3,459,034	+		IAI47_16315	0.52	-1.7
3,459,034	+		IAI47_16315	0.52	+0.6
3,459,034	+		IAI47_16315	0.52	-1.7
3,459,034	+		IAI47_16315	0.52	+0.6
3,459,035	-		IAI47_16315	0.52	-0.4
3,459,035	-		IAI47_16315	0.52	+0.5
3,459,035	-		IAI47_16315	0.52	-0.4
3,459,035	-		IAI47_16315	0.52	+0.2
3,459,037	+		IAI47_16315	0.52	-2.2
3,459,425	+				-1.4
3,459,425	+				+1.0
3,459,425	+				-1.5
3,459,426	-				-1.4
3,459,426	-				-1.4
3,459,426	-				+0.9
3,459,427	+				+1.0
3,459,427	+				+1.7
3,459,427	+				-1.7
3,459,427	+				-1.1
3,459,427	+				+0.4
3,459,427	+				-0.1
3,459,428	-				+0.1
3,459,428	-				+0.6
3,459,428	-				+1.5
3,459,428	-				+1.1
3,459,428	-				-0.4
3,459,428	-				-1.5
3,459,428	-				+1.0
3,459,428	-				-1.2
3,459,428	-				+0.8
3,459,428	-				-1.2
3,459,428	-				+2.0
3,459,431	+				+1.2
3,459,431	+				-0.4
3,459,431	+				+1.8
3,459,431	+				-0.4
3,459,431	+				+2.3
3,459,432	-				-0.1
3,459,432	-				+1.2
3,459,432	-				+1.4
3,459,432	-				-2.0
3,459,490	+				+0.7
3,459,587	+				-1.1
3,459,587	+				-1.7
3,459,587	+				-2.1
3,459,587	+				-2.4
3,459,587	+				-1.1
3,459,587	+				-0.6
3,459,587	+				-0.1
3,459,587	+				-1.8
3,459,587	+				+0.2
3,459,587	+				+0.9
3,459,587	+				+1.9
3,459,587	+				-1.2
3,459,587	+				+0.6
3,459,587	+				-1.5
3,459,587	+				-1.1
3,459,587	+				+0.1
3,459,587	+				-1.6
3,459,587	+				+3.0
3,459,587	+				-0.3
3,459,587	+				-2.0
3,459,587	+				-2.4
3,459,587	+				-1.1
3,459,587	+				-1.0
3,459,587	+				-2.3
3,459,587	+				-0.5
3,459,587	+				-0.7
3,459,587	+				+0.6
3,459,587	+				-0.4
3,459,587	+				+0.8
3,459,587	+				+1.6
3,459,587	+				-0.2
3,459,587	+				-2.2
3,459,587	+				-2.3
3,459,588	-				+0.1
3,459,588	-				-1.9
3,459,588	-				+0.3
3,459,588	-				+0.9
3,459,588	-				-1.2
3,459,588	-				+0.1
3,459,588	-				-2.2
3,459,588	-				+1.0
3,459,588	-				+0.1
3,459,588	-				-1.1
3,459,588	-				-1.1
3,459,588	-				-0.1
3,459,588	-				+0.3
3,459,588	-				+0.6
3,459,588	-				-0.4
3,459,588	-				-1.6
3,459,588	-				-1.8
3,459,588	-				-0.5
3,459,588	-				-0.1
3,459,588	-				-2.9
3,459,588	-				-0.4
3,459,588	-				-1.2
3,459,588	-				-0.9
3,459,588	-				+1.1
3,459,588	-				+0.5
3,459,588	-				-1.1
3,459,588	-				-2.4
3,459,588	-				+0.4
3,459,624	+				-0.9
3,459,687	-				-1.4
3,459,770	+				+0.9
3,459,770	+				-0.9
3,459,794	-				+0.8
3,459,794	-				+0.9
3,459,834	+				-0.1
3,459,834	+				+0.5
3,459,838	+				+3.3
3,459,838	+				-1.9
3,459,838	+				+1.7
3,459,838	+				-1.5
3,459,838	+				-1.9
3,459,839	-				-2.6
3,459,839	-				-0.4
3,459,900	+				+0.1
3,459,901	-				+0.4
3,459,978	-		IAI47_16320	0.16	-0.4
3,460,004	+		IAI47_16320	0.20	+0.6
3,460,005	-		IAI47_16320	0.20	+0.6
3,460,015	+		IAI47_16320	0.21	-1.2
3,460,015	+		IAI47_16320	0.21	-0.7
3,460,042	-		IAI47_16320	0.25	-2.0
3,460,051	+		IAI47_16320	0.26	-0.5
3,460,161	+		IAI47_16320	0.40	+1.2
3,460,162	-		IAI47_16320	0.40	-1.9
3,460,171	+		IAI47_16320	0.42	-2.3
3,460,171	+		IAI47_16320	0.42	+0.7
3,460,172	-		IAI47_16320	0.42	-2.5
3,460,173	+		IAI47_16320	0.42	+0.1
3,460,173	+		IAI47_16320	0.42	+1.6
3,460,173	+		IAI47_16320	0.42	+1.1
3,460,173	+		IAI47_16320	0.42	-0.7
3,460,173	+		IAI47_16320	0.42	-0.4
3,460,173	+		IAI47_16320	0.42	+0.1
3,460,174	-		IAI47_16320	0.42	-0.8
3,460,224	+		IAI47_16320	0.48	-0.8
3,460,224	+		IAI47_16320	0.48	-0.7
3,460,225	-		IAI47_16320	0.49	-1.8
3,460,263	+		IAI47_16320	0.54	-1.9
3,460,264	-		IAI47_16320	0.54	-0.7
3,460,264	-		IAI47_16320	0.54	+0.3
3,460,269	+		IAI47_16320	0.54	-0.5
3,460,270	-		IAI47_16320	0.55	-2.5
3,460,270	-		IAI47_16320	0.55	-1.2
3,460,311	+		IAI47_16320	0.60	+0.2
3,460,311	+		IAI47_16320	0.60	+0.1
3,460,311	+		IAI47_16320	0.60	+1.5
3,460,312	-		IAI47_16320	0.60	-0.3
3,460,325	+		IAI47_16320	0.62	-0.8
3,460,408	+		IAI47_16320	0.73	+0.5
3,460,408	+		IAI47_16320	0.73	+0.3
3,460,408	+		IAI47_16320	0.73	-2.1
3,460,408	+		IAI47_16320	0.73	+3.5
3,460,408	+		IAI47_16320	0.73	-1.4
3,460,408	+		IAI47_16320	0.73	-0.4
3,460,408	+		IAI47_16320	0.73	-1.8
3,460,408	+		IAI47_16320	0.73	-2.7
3,460,408	+		IAI47_16320	0.73	+0.8
3,460,485	+		IAI47_16320	0.83	+0.4
3,460,485	+		IAI47_16320	0.83	-1.9
3,460,485	+		IAI47_16320	0.83	-0.9
3,460,485	+		IAI47_16320	0.83	-1.4
3,460,485	+		IAI47_16320	0.83	-1.0
3,460,485	+		IAI47_16320	0.83	-1.4
3,460,485	+				-0.9
3,460,485	+		IAI47_16320	0.83	+0.3
3,460,485	+		IAI47_16320	0.83	-0.4
3,460,485	+		IAI47_16320	0.83	+0.1
3,460,486	-		IAI47_16320	0.83	+0.1
3,460,486	-		IAI47_16320	0.83	+1.3
3,460,486	-		IAI47_16320	0.83	-0.4
3,460,489	+		IAI47_16320	0.83	-0.5
3,460,489	+		IAI47_16320	0.83	-1.5
3,460,490	-		IAI47_16320	0.83	-0.8
3,460,572	-				+0.1
3,460,666	+				+0.2
3,460,666	+				-1.3
3,460,666	+				+0.8
3,460,666	+				-0.2
3,460,673	+				+1.5
3,460,673	+				+0.7
3,460,673	+				-0.3
3,460,673	+				-0.5
3,460,673	+				+0.3
3,460,673	+				-0.3
3,460,674	-				-2.2
3,460,674	-				-2.6
3,460,674	-				-0.0
3,460,674	-				-0.3
3,460,674	-				-1.9
3,460,674	-				-1.6
3,460,705	+				-1.4
3,460,747	-				-0.3
3,460,812	+				-1.8
3,460,812	+				+1.4
3,460,812	+				+0.3
3,460,813	-				-0.3
3,460,813	-				-0.5
3,460,813	-				+0.6
3,460,814	+				+1.0
3,460,814	+				-1.7
3,460,814	+				-0.8
3,460,814	+				-0.3
3,460,814	+				+1.7
3,460,814	+				+1.2
3,460,814	+				+2.0
3,460,814	+				-0.7
3,460,815	-				+0.6
3,460,815	-				-1.1
3,460,815	-				-2.6
3,460,815	-				-1.5
3,460,815	-				+2.0
3,460,815	-				+2.0
3,460,815	-				-2.7
3,460,856	+				+1.2
3,460,856	+				+3.0
3,460,856	+				-1.4
3,460,856	+				-0.7
3,460,857	-				+2.3
3,460,857	-				-0.2
3,460,857	-				-0.9
3,460,857	-				+3.3
3,460,857	-				-1.3
3,460,906	+				-1.5
3,460,906	+				+1.1
3,460,928	+				-0.7
3,460,970	+		IAI47_16325	0.10	-0.3
3,460,971	-		IAI47_16325	0.10	-0.1
3,461,013	+		IAI47_16325	0.13	+1.9
3,461,013	+		IAI47_16325	0.13	+1.0
3,461,014	-		IAI47_16325	0.13	+1.6
3,461,036	+		IAI47_16325	0.14	+0.3
3,461,037	-		IAI47_16325	0.14	-1.3
3,461,037	-		IAI47_16325	0.14	+0.5
3,461,037	-		IAI47_16325	0.14	+1.7
3,461,086	+		IAI47_16325	0.17	+1.2
3,461,086	+		IAI47_16325	0.17	-2.2
3,461,087	-		IAI47_16325	0.17	+0.9
3,461,118	+		IAI47_16325	0.19	+0.9
3,461,127	+		IAI47_16325	0.20	-1.8
3,461,127	+		IAI47_16325	0.20	+0.5
3,461,127	+		IAI47_16325	0.20	-0.4
3,461,127	+		IAI47_16325	0.20	-2.6
3,461,128	-		IAI47_16325	0.20	-0.6
3,461,220	-		IAI47_16325	0.25	-0.4
3,461,454	+		IAI47_16325	0.39	+0.6
3,461,454	+		IAI47_16325	0.39	+0.3
3,461,454	+		IAI47_16325	0.39	+0.1
3,461,455	-		IAI47_16325	0.39	+0.4
3,461,455	-		IAI47_16325	0.39	+0.3
3,461,455	-		IAI47_16325	0.39	+0.2
3,461,455	-		IAI47_16325	0.39	-1.0
3,461,507	+		IAI47_16325	0.43	-2.0
3,461,508	-		IAI47_16325	0.43	-2.4
3,461,526	+		IAI47_16325	0.44	-0.8
3,461,526	+		IAI47_16325	0.44	+1.1
3,461,526	+		IAI47_16325	0.44	+0.7
3,461,526	+		IAI47_16325	0.44	+0.2
3,461,526	+		IAI47_16325	0.44	-3.1
3,461,526	+		IAI47_16325	0.44	-2.6
3,461,526	+		IAI47_16325	0.44	-1.3
3,461,526	+		IAI47_16325	0.44	-0.4
3,461,526	+		IAI47_16325	0.44	+0.1
3,461,526	+		IAI47_16325	0.44	+1.4
3,461,527	-		IAI47_16325	0.44	+0.0
3,461,527	-		IAI47_16325	0.44	+0.4
3,461,527	-		IAI47_16325	0.44	+1.6
3,461,527	-		IAI47_16325	0.44	-0.1
3,461,527	-		IAI47_16325	0.44	+0.2
3,461,527	-		IAI47_16325	0.44	-1.0
3,461,527	-		IAI47_16325	0.44	-1.7
3,461,527	-		IAI47_16325	0.44	-0.3
3,461,527	-		IAI47_16325	0.44	-0.9
3,461,527	-		IAI47_16325	0.44	-1.2
3,461,594	+		IAI47_16325	0.48	+0.8
3,461,594	+		IAI47_16325	0.48	-1.8
3,461,594	+		IAI47_16325	0.48	-3.0
3,461,594	+		IAI47_16325	0.48	-1.4
3,461,594	+		IAI47_16325	0.48	-1.8