Strain Fitness in Pantoea sp. MT58 around IAI47_16055

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,392,362	+		IAI47_16050	0.66	+0.4
3,392,363	-		IAI47_16050	0.66	-0.1
3,392,420	+		IAI47_16050	0.69	+1.9
3,392,420	+		IAI47_16050	0.69	-0.4
3,392,420	+		IAI47_16050	0.69	+0.7
3,392,421	-		IAI47_16050	0.69	-0.6
3,392,421	-		IAI47_16050	0.69	-0.2
3,392,432	+		IAI47_16050	0.69	+1.0
3,392,432	+		IAI47_16050	0.69	+0.0
3,392,432	+		IAI47_16050	0.69	+0.2
3,392,432	+		IAI47_16050	0.69	+0.5
3,392,432	+		IAI47_16050	0.69	-2.9
3,392,433	-		IAI47_16050	0.69	-0.9
3,392,433	-		IAI47_16050	0.69	+1.0
3,392,433	-		IAI47_16050	0.69	+1.0
3,392,433	-		IAI47_16050	0.69	+0.4
3,392,588	+		IAI47_16050	0.76	-2.6
3,392,657	+		IAI47_16050	0.79	+3.1
3,392,657	+		IAI47_16050	0.79	+0.4
3,392,657	+		IAI47_16050	0.79	+0.9
3,392,657	+		IAI47_16050	0.79	+1.2
3,392,765	+		IAI47_16050	0.83	-0.9
3,392,765	+		IAI47_16050	0.83	+1.3
3,392,765	+		IAI47_16050	0.83	+1.5
3,392,765	+		IAI47_16050	0.83	+0.9
3,392,766	-		IAI47_16050	0.83	-0.4
3,392,766	-		IAI47_16050	0.83	+2.7
3,392,773	+		IAI47_16050	0.84	+0.5
3,392,773	+		IAI47_16050	0.84	+1.1
3,392,773	+		IAI47_16050	0.84	-1.9
3,392,773	+		IAI47_16050	0.84	+0.4
3,392,773	+		IAI47_16050	0.84	+1.3
3,392,801	+		IAI47_16050	0.85	-0.3
3,392,801	+		IAI47_16050	0.85	+0.1
3,392,801	+		IAI47_16050	0.85	+0.9
3,392,801	+		IAI47_16050	0.85	-1.5
3,392,801	+		IAI47_16050	0.85	-1.2
3,392,801	+		IAI47_16050	0.85	-0.5
3,392,802	-		IAI47_16050	0.85	+0.4
3,392,859	-		IAI47_16050	0.87	-1.6
3,392,883	+		IAI47_16050	0.88	-1.3
3,392,884	-		IAI47_16050	0.88	+1.5
3,392,891	+		IAI47_16050	0.89	+0.9
3,392,891	+		IAI47_16050	0.89	+0.0
3,392,891	+		IAI47_16050	0.89	+0.9
3,392,892	-		IAI47_16050	0.89	+0.5
3,392,950	+				-1.1
3,392,956	-				+0.6
3,392,996	+				-0.4
3,393,062	+				+0.4
3,393,062	+				-0.4
3,393,063	-				+0.8
3,393,063	-				-1.4
3,393,063	-				-1.1
3,393,063	-				-1.1
3,393,067	+				-0.4
3,393,067	+				-1.3
3,393,068	-				-0.6
3,393,127	+				-2.6
3,393,127	+				-1.5
3,393,127	+				+0.6
3,393,128	-				+0.4
3,393,128	-				-1.4
3,393,133	+				+1.4
3,393,133	+				+0.5
3,393,133	+				+0.7
3,393,133	+				-0.4
3,393,133	+				+1.3
3,393,133	+				-0.2
3,393,133	+				+1.7
3,393,133	+				+1.5
3,393,133	+				-1.3
3,393,133	+				-0.8
3,393,133	+				+2.4
3,393,133	+				-0.1
3,393,134	-				+1.9
3,393,134	-				+2.4
3,393,134	-				-0.2
3,393,134	-				-0.4
3,393,134	-				+1.5
3,393,134	-				+0.2
3,393,134	-				-1.2
3,393,134	-				+0.2
3,393,134	-				+1.1
3,393,134	-				+1.8
3,393,136	+				-0.7
3,393,187	+				+0.8
3,393,187	+				+1.2
3,393,187	+				+1.8
3,393,188	-				-1.0
3,393,188	-				-0.3
3,393,221	-				-2.4
3,393,253	-				-1.0
3,393,259	-				-0.4
3,393,259	-				-0.8
3,393,285	-				-2.3
3,393,285	-				-1.5
3,393,311	+				-0.9
3,393,311	+				-0.0
3,393,311	+				-2.2
3,393,311	+				-0.3
3,393,311	+				-1.5
3,393,312	-				-0.7
3,393,312	-				-1.4
3,393,312	-				+1.3
3,393,312	-				-0.9
3,393,312	-				-2.3
3,393,312	-				-2.6
3,393,312	-				-0.8
3,393,313	+				-0.1
3,393,313	+				-0.5
3,393,313	+				-1.2
3,393,313	+				-0.7
3,393,313	+				+0.7
3,393,313	+				+1.6
3,393,313	+				-2.3
3,393,313	+				-1.9
3,393,314	-				-1.5
3,393,314	-				-1.3
3,393,323	-				-1.2
3,393,327	+				-3.1
3,393,327	+				-0.4
3,393,328	-				-0.7
3,393,328	-				-2.0
3,393,328	-				-1.2
3,393,328	-				-1.8
3,393,328	-				-0.5
3,393,328	-				+0.1
3,393,328	-				-1.7
3,393,328	-				+0.6
3,393,343	+				-2.4
3,393,343	+				-0.9
3,393,349	+				-1.2
3,393,350	-				-2.3
3,393,350	-				-0.7
3,393,391	+				-0.2
3,393,391	+				-1.6
3,393,392	-				+0.6
3,393,397	+				+0.4
3,393,397	+				-2.1
3,393,397	+				+0.3
3,393,397	+				-3.9
3,393,397	+				+0.1
3,393,397	+				-0.7
3,393,397	+				-1.1
3,393,397	+				-2.7
3,393,397	+				-0.4
3,393,397	+				-1.2
3,393,397	+				-0.7
3,393,397	+				-0.8
3,393,397	+				-3.6
3,393,398	-				-1.0
3,393,398	-				-1.5
3,393,398	-				+0.3
3,393,398	-				+1.2
3,393,398	-				-1.4
3,393,398	-				-0.4
3,393,398	-				-2.4
3,393,398	-				+0.3
3,393,398	-				-0.4
3,393,441	-				-3.5
3,393,441	-				+0.8
3,393,441	-				-1.1
3,393,479	-				-2.0
3,393,479	-				-1.8
3,393,490	+				-2.0
3,393,490	+				-0.9
3,393,490	+				-2.4
3,393,491	-				+0.2
3,393,491	-				-1.9
3,393,534	+				-0.6
3,393,534	+				-2.1
3,393,534	+				-1.8
3,393,534	+				+1.1
3,393,535	-				-0.6
3,393,535	-				-0.9
3,393,535	-				-0.3
3,393,535	-				-0.9
3,393,537	-				-0.4
3,393,560	+				-2.8
3,393,560	+				-1.3
3,393,560	+				-1.0
3,393,560	+				-2.8
3,393,560	+				-0.8
3,393,560	+				-0.6
3,393,561	-				-2.8
3,393,561	-				-1.8
3,393,561	-				-1.6
3,393,561	-				-2.6
3,393,561	-				-3.2
3,393,561	-				+1.3
3,393,562	+				-0.9
3,393,563	-				-1.3
3,393,633	+		IAI47_16055	0.11	-0.6
3,393,633	+		IAI47_16055	0.11	-2.3
3,393,633	+		IAI47_16055	0.11	-1.2
3,393,640	+		IAI47_16055	0.11	-1.2
3,393,641	-		IAI47_16055	0.11	-0.5
3,393,712	+		IAI47_16055	0.14	-1.1
3,393,713	-		IAI47_16055	0.14	+0.5
3,393,717	-		IAI47_16055	0.14	-1.6
3,393,732	-		IAI47_16055	0.14	-2.3
3,393,732	-		IAI47_16055	0.14	-1.0
3,393,766	+		IAI47_16055	0.16	-2.3
3,393,766	+		IAI47_16055	0.16	-0.5
3,393,766	+		IAI47_16055	0.16	-0.5
3,393,766	+		IAI47_16055	0.16	-2.3
3,393,766	+		IAI47_16055	0.16	+0.7
3,393,766	+		IAI47_16055	0.16	+1.3
3,393,766	+		IAI47_16055	0.16	-0.5
3,393,767	-		IAI47_16055	0.16	-2.3
3,393,767	-		IAI47_16055	0.16	-1.4
3,393,767	-		IAI47_16055	0.16	-0.3
3,393,767	-		IAI47_16055	0.16	-2.1
3,393,767	-		IAI47_16055	0.16	-0.4
3,393,769	+		IAI47_16055	0.16	-0.2
3,393,769	+		IAI47_16055	0.16	-2.2
3,393,769	+		IAI47_16055	0.16	-1.9
3,393,770	-		IAI47_16055	0.16	-2.2
3,393,770	-		IAI47_16055	0.16	-1.4
3,393,859	+		IAI47_16055	0.19	-2.3
3,393,860	-		IAI47_16055	0.19	+0.2
3,393,860	-		IAI47_16055	0.19	-0.7
3,393,921	+		IAI47_16055	0.21	-1.6
3,393,925	+		IAI47_16055	0.21	+1.0
3,393,925	+		IAI47_16055	0.21	-1.6
3,393,925	+		IAI47_16055	0.21	-1.6
3,393,925	+		IAI47_16055	0.21	+0.7
3,393,925	+		IAI47_16055	0.21	+1.3
3,393,926	-		IAI47_16055	0.21	-0.9
3,394,017	-		IAI47_16055	0.24	-0.9
3,394,069	+		IAI47_16055	0.26	-0.3
3,394,070	-		IAI47_16055	0.26	-0.4
3,394,070	-		IAI47_16055	0.26	-2.5
3,394,070	-		IAI47_16055	0.26	-0.7
3,394,070	-		IAI47_16055	0.26	-2.2
3,394,199	+		IAI47_16055	0.30	-3.3
3,394,199	+		IAI47_16055	0.30	-1.0
3,394,200	-		IAI47_16055	0.30	-1.2
3,394,200	-		IAI47_16055	0.30	-1.2
3,394,207	+				-1.4
3,394,208	-		IAI47_16055	0.31	-0.4
3,394,570	+		IAI47_16055	0.43	-1.9
3,394,658	-		IAI47_16055	0.46	-0.4
3,394,658	-		IAI47_16055	0.46	-1.5
3,394,658	-		IAI47_16055	0.46	-0.6
3,394,733	+		IAI47_16055	0.49	-3.7
3,394,733	+		IAI47_16055	0.49	-1.9
3,394,734	-		IAI47_16055	0.49	+2.1
3,394,802	+		IAI47_16055	0.51	-2.4
3,394,802	+		IAI47_16055	0.51	-0.6
3,394,803	-		IAI47_16055	0.51	+0.0
3,394,819	+		IAI47_16055	0.52	-1.2
3,394,820	-		IAI47_16055	0.52	-0.7
3,394,879	-		IAI47_16055	0.54	-2.3
3,394,897	+		IAI47_16055	0.54	-2.7
3,394,897	+		IAI47_16055	0.54	-0.9
3,394,898	-		IAI47_16055	0.54	+0.5
3,394,898	-		IAI47_16055	0.54	+0.2
3,394,940	-		IAI47_16055	0.56	+0.2
3,395,023	+		IAI47_16055	0.59	-2.7
3,395,024	-		IAI47_16055	0.59	-0.4
3,395,024	-		IAI47_16055	0.59	+1.0
3,395,092	+		IAI47_16055	0.61	-0.9
3,395,092	+		IAI47_16055	0.61	-0.1
3,395,092	+		IAI47_16055	0.61	-0.8
3,395,093	-		IAI47_16055	0.61	-0.4
3,395,093	-		IAI47_16055	0.61	-2.7
3,395,093	-		IAI47_16055	0.61	-1.0
3,395,093	-		IAI47_16055	0.61	-1.7
3,395,093	-		IAI47_16055	0.61	-1.7
3,395,094	+		IAI47_16055	0.61	-2.5
3,395,094	+		IAI47_16055	0.61	+1.0
3,395,094	+		IAI47_16055	0.61	-0.5
3,395,094	+		IAI47_16055	0.61	+2.0
3,395,094	+		IAI47_16055	0.61	-3.7
3,395,094	+		IAI47_16055	0.61	-3.6
3,395,094	+		IAI47_16055	0.61	-1.5
3,395,094	+		IAI47_16055	0.61	-0.8
3,395,095	-		IAI47_16055	0.61	-2.9
3,395,095	-		IAI47_16055	0.61	-1.8
3,395,095	-		IAI47_16055	0.61	-0.1
3,395,095	-		IAI47_16055	0.61	+2.3
3,395,095	-		IAI47_16055	0.61	-2.5
3,395,095	-		IAI47_16055	0.61	+0.1
3,395,110	+		IAI47_16055	0.62	-1.4
3,395,110	+		IAI47_16055	0.62	-1.1
3,395,110	+		IAI47_16055	0.62	+1.8
3,395,128	+		IAI47_16055	0.62	-2.8
3,395,187	-		IAI47_16055	0.64	-1.4
3,395,240	+		IAI47_16055	0.66	-2.7
3,395,240	+		IAI47_16055	0.66	+1.1
3,395,240	+		IAI47_16055	0.66	-0.8
3,395,240	+		IAI47_16055	0.66	-2.0
3,395,241	-		IAI47_16055	0.66	-1.9
3,395,241	-		IAI47_16055	0.66	-3.7
3,395,241	-		IAI47_16055	0.66	-1.1
3,395,241	-		IAI47_16055	0.66	-1.4
3,395,241	-		IAI47_16055	0.66	-3.3
3,395,241	-		IAI47_16055	0.66	-2.2
3,395,241	-		IAI47_16055	0.66	-1.2
3,395,270	+		IAI47_16055	0.67	-0.6
3,395,312	-		IAI47_16055	0.69	-2.4
3,395,429	-		IAI47_16055	0.73	+0.6
3,395,429	-		IAI47_16055	0.73	-2.5
3,395,474	-		IAI47_16055	0.74	-3.5
3,395,486	-		IAI47_16055	0.75	-1.6
3,395,486	-		IAI47_16055	0.75	-2.7
3,395,519	-		IAI47_16055	0.76	-2.7
3,395,632	+		IAI47_16055	0.80	-0.7
3,395,633	-		IAI47_16055	0.80	-2.3
3,395,633	-		IAI47_16055	0.80	-0.3
3,395,644	+		IAI47_16055	0.80	-2.6
3,395,645	-		IAI47_16055	0.80	-1.4
3,395,645	-		IAI47_16055	0.80	-1.0
3,395,771	+		IAI47_16055	0.85	-1.0
3,395,771	+		IAI47_16055	0.85	-0.1
3,395,771	+		IAI47_16055	0.85	+2.2
3,395,771	+		IAI47_16055	0.85	-1.5
3,395,771	+		IAI47_16055	0.85	-2.8
3,395,772	-		IAI47_16055	0.85	-2.8
3,395,772	-		IAI47_16055	0.85	-0.6
3,395,772	-		IAI47_16055	0.85	-3.6
3,395,772	-		IAI47_16055	0.85	-1.3
3,395,772	-		IAI47_16055	0.85	-2.2
3,395,772	-		IAI47_16055	0.85	+0.4
3,395,772	-		IAI47_16055	0.85	-0.4
3,395,772	-		IAI47_16055	0.85	-0.4
3,395,772	-		IAI47_16055	0.85	+1.8
3,395,772	-		IAI47_16055	0.85	+0.3
3,395,772	-		IAI47_16055	0.85	-1.7
3,395,772	-		IAI47_16055	0.85	-0.8
3,395,851	+		IAI47_16055	0.87	+0.2
3,395,852	-		IAI47_16055	0.87	-0.4
3,395,863	+		IAI47_16055	0.88	+0.3
3,395,864	-		IAI47_16055	0.88	-1.7
3,395,897	-		IAI47_16055	0.89	-1.4
3,395,935	+				+1.6
3,395,936	-				-2.1
3,396,076	+				-0.9
3,396,076	+				-2.2
3,396,218	+				-1.4
3,396,218	+				+0.7
3,396,219	-				-1.1
3,396,219	-				+2.3
3,396,244	-				+2.2
3,396,244	-				+1.1
3,396,269	+				-1.6
3,396,269	+				+0.6
3,396,269	+				+0.2
3,396,269	+				+0.0
3,396,269	+				+0.6
3,396,269	+				+0.5
3,396,269	+				-0.7
3,396,269	+				+1.3
3,396,269	+				-0.5
3,396,270	-				-1.1
3,396,270	-				-1.7
3,396,270	-				-0.7
3,396,270	-				+0.4
3,396,270	-				-2.8
3,396,305	+				-0.5
3,396,305	+				+0.9
3,396,305	+				+1.2
3,396,319	+				-1.6
3,396,319	+				-0.1
3,396,319	+				-1.0
3,396,319	+				-1.2
3,396,319	+				+1.0
3,396,319	+				+1.9
3,396,320	-				-1.0
3,396,320	-				-1.5
3,396,320	-				+2.0
3,396,320	-				-1.2
3,396,386	-		IAI47_16060	0.19	-0.8
3,396,386	-		IAI47_16060	0.19	-1.6
3,396,386	-		IAI47_16060	0.19	+1.8
3,396,402	+		IAI47_16060	0.22	+0.7
3,396,402	+		IAI47_16060	0.22	+0.9
3,396,402	+		IAI47_16060	0.22	+0.3
3,396,403	-		IAI47_16060	0.22	+1.5
3,396,403	-		IAI47_16060	0.22	+0.5
3,396,403	-		IAI47_16060	0.22	+0.6
3,396,403	-		IAI47_16060	0.22	+0.0
3,396,539	+		IAI47_16060	0.43	-0.8
3,396,539	+		IAI47_16060	0.43	-0.2
3,396,539	+		IAI47_16060	0.43	-1.2
3,396,539	+		IAI47_16060	0.43	-1.9
3,396,540	-		IAI47_16060	0.43	+1.4
3,396,540	-		IAI47_16060	0.43	-1.2
3,396,540	-		IAI47_16060	0.43	+1.9
3,396,540	-		IAI47_16060	0.43	-3.3
3,396,540	-		IAI47_16060	0.43	+3.0
3,396,668	+		IAI47_16060	0.62	-0.7
3,396,683	+		IAI47_16060	0.65	+2.3
3,396,700	+		IAI47_16060	0.67	-0.2
3,396,701	-		IAI47_16060	0.67	-0.1
3,396,701	-		IAI47_16060	0.67	+1.0
3,396,701	-		IAI47_16060	0.67	+2.4
3,396,716	-		IAI47_16060	0.70	-1.6
3,396,716	-		IAI47_16060	0.70	+0.5
3,396,716	-		IAI47_16060	0.70	+3.1
3,396,725	-		IAI47_16060	0.71	+0.4
3,396,744	+		IAI47_16060	0.74	-1.1
3,396,744	+		IAI47_16060	0.74	-0.2
3,396,745	-		IAI47_16060	0.74	-1.8
3,396,745	-		IAI47_16060	0.74	-1.0
3,396,745	-		IAI47_16060	0.74	+1.8
3,396,745	-		IAI47_16060	0.74	-1.1
3,396,754	+		IAI47_16060	0.76	-0.1
3,396,754	+		IAI47_16060	0.76	+0.6
3,396,754	+		IAI47_16060	0.76	+0.5
3,396,754	+		IAI47_16060	0.76	-0.5
3,396,754	+		IAI47_16060	0.76	+2.5
3,396,754	+		IAI47_16060	0.76	-0.1
3,396,754	+		IAI47_16060	0.76	-0.1
3,396,754	+		IAI47_16060	0.76	+0.8
3,396,754	+		IAI47_16060	0.76	+0.6
3,396,754	+		IAI47_16060	0.76	-0.7
3,396,755	-		IAI47_16060	0.76	-1.6
3,396,755	-		IAI47_16060	0.76	-0.4
3,396,755	-		IAI47_16060	0.76	-1.3
3,396,755	-		IAI47_16060	0.76	+0.8
3,396,755	-		IAI47_16060	0.76	-0.2
3,396,755	-		IAI47_16060	0.76	-2.5
3,396,755	-		IAI47_16060	0.76	-1.9
3,396,755	-		IAI47_16060	0.76	-0.4
3,396,755	-		IAI47_16060	0.76	+0.3
3,396,755	-		IAI47_16060	0.76	-1.1
3,396,794	+		IAI47_16060	0.82	+1.1
3,396,794	+		IAI47_16060	0.82	-0.7
3,396,794	+		IAI47_16060	0.82	-1.5
3,396,794	+		IAI47_16060	0.82	+0.3
3,396,794	+		IAI47_16060	0.82	-0.1
3,396,794	+		IAI47_16060	0.82	-0.2
3,396,794	+		IAI47_16060	0.82	+0.1
3,396,794	+		IAI47_16060	0.82	-0.5
3,396,794	+		IAI47_16060	0.82	-0.2
3,396,795	-		IAI47_16060	0.82	+0.6
3,396,795	-		IAI47_16060	0.82	+0.7
3,396,795	-		IAI47_16060	0.82	-2.6
3,396,795	-		IAI47_16060	0.82	-2.2
3,396,795	-		IAI47_16060	0.82	-0.9
3,396,795	-		IAI47_16060	0.82	+1.8
3,396,795	-		IAI47_16060	0.82	+1.1
3,396,831	+		IAI47_16060	0.87	-1.9
3,396,831	+		IAI47_16060	0.87	+1.7
3,396,832	-		IAI47_16060	0.87	-0.9
3,396,853	+				-1.3
3,396,853	+				+0.6
3,396,854	-				-0.7
3,396,854	-				-1.4
3,396,854	-				-1.1
3,396,854	-				-2.3
3,396,854	-				-0.9
3,396,854	-				-1.6
3,396,854	-				+1.3
3,396,854	-				+0.9
3,396,878	-				-3.0
3,396,911	+				+1.5
3,396,911	+				+0.9
3,396,911	+				-2.6
3,396,911	+				+1.3
3,396,911	+				-0.4
3,396,912	-				+0.2
3,396,912	-				+0.2
3,396,912	-				+0.1
3,396,918	+				+0.4
3,396,978	+				-1.7
3,396,978	+				-1.9
3,396,979	-				+1.5
3,397,012	-				+2.0
3,397,087	+		IAI47_16065	0.14	+2.0
3,397,087	+		IAI47_16065	0.14	+0.2
3,397,087	+		IAI47_16065	0.14	+0.9
3,397,087	+		IAI47_16065	0.14	+0.8
3,397,088	-		IAI47_16065	0.14	-0.7
3,397,088	-		IAI47_16065	0.14	-1.7
3,397,129	+		IAI47_16065	0.19	+1.9
3,397,130	-		IAI47_16065	0.19	-1.0