Strain Fitness in Pantoea sp. MT58 around IAI47_15090

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,182,282	+		IAI47_15085	0.56	-0.1
3,182,282	+		IAI47_15085	0.56	+1.5
3,182,283	-		IAI47_15085	0.56	-0.5
3,182,283	-		IAI47_15085	0.56	-0.1
3,182,283	-		IAI47_15085	0.56	-0.2
3,182,283	-		IAI47_15085	0.56	+1.8
3,182,283	-		IAI47_15085	0.56	+0.7
3,182,283	-		IAI47_15085	0.56	+0.9
3,182,283	-		IAI47_15085	0.56	+0.1
3,182,283	-		IAI47_15085	0.56	-1.5
3,182,283	-		IAI47_15085	0.56	-0.3
3,182,314	+		IAI47_15085	0.58	-0.3
3,182,314	+		IAI47_15085	0.58	-1.1
3,182,314	+		IAI47_15085	0.58	-3.2
3,182,314	+		IAI47_15085	0.58	-0.1
3,182,314	+		IAI47_15085	0.58	-0.8
3,182,315	-		IAI47_15085	0.58	+1.8
3,182,315	-		IAI47_15085	0.58	-2.6
3,182,318	+		IAI47_15085	0.58	-2.1
3,182,318	+		IAI47_15085	0.58	-0.6
3,182,318	+		IAI47_15085	0.58	-1.5
3,182,319	-		IAI47_15085	0.58	+1.1
3,182,319	-		IAI47_15085	0.58	+1.6
3,182,319	-		IAI47_15085	0.58	+0.4
3,182,329	+		IAI47_15085	0.59	-1.6
3,182,330	-		IAI47_15085	0.59	-0.1
3,182,330	-		IAI47_15085	0.59	+1.3
3,182,330	-		IAI47_15085	0.59	+1.4
3,182,345	+		IAI47_15085	0.59	-1.4
3,182,345	+		IAI47_15085	0.59	-0.2
3,182,358	-		IAI47_15085	0.60	+2.5
3,182,358	-		IAI47_15085	0.60	-1.9
3,182,370	-		IAI47_15085	0.61	-2.0
3,182,370	-		IAI47_15085	0.61	-1.6
3,182,411	+		IAI47_15085	0.63	+1.2
3,182,411	+		IAI47_15085	0.63	+0.8
3,182,411	+		IAI47_15085	0.63	-0.0
3,182,412	-		IAI47_15085	0.63	-1.1
3,182,412	-		IAI47_15085	0.63	+2.3
3,182,412	-		IAI47_15085	0.63	-1.4
3,182,412	-		IAI47_15085	0.63	+0.9
3,182,438	+		IAI47_15085	0.65	-0.6
3,182,439	-		IAI47_15085	0.65	-0.4
3,182,439	-		IAI47_15085	0.65	+3.8
3,182,439	-		IAI47_15085	0.65	+0.5
3,182,546	+		IAI47_15085	0.71	+1.3
3,182,546	+		IAI47_15085	0.71	-2.4
3,182,547	-		IAI47_15085	0.71	+0.6
3,182,577	+		IAI47_15085	0.73	-0.3
3,182,578	-		IAI47_15085	0.73	-2.3
3,182,578	-		IAI47_15085	0.73	+1.7
3,182,578	-		IAI47_15085	0.73	-0.5
3,182,582	+		IAI47_15085	0.73	-1.1
3,182,583	-		IAI47_15085	0.73	+3.6
3,182,583	-		IAI47_15085	0.73	-0.2
3,182,636	+		IAI47_15085	0.76	+0.0
3,182,637	-		IAI47_15085	0.76	+0.6
3,182,740	+		IAI47_15085	0.82	-0.2
3,182,740	+		IAI47_15085	0.82	+1.7
3,182,740	+		IAI47_15085	0.82	+0.7
3,182,740	+		IAI47_15085	0.82	+0.9
3,182,740	+		IAI47_15085	0.82	-1.9
3,182,741	-		IAI47_15085	0.82	-1.5
3,182,741	-		IAI47_15085	0.82	-2.3
3,182,741	-		IAI47_15085	0.82	-0.6
3,182,741	-		IAI47_15085	0.82	+0.0
3,182,749	+		IAI47_15085	0.82	-1.0
3,182,749	+		IAI47_15085	0.82	+1.7
3,182,749	+		IAI47_15085	0.82	+0.2
3,182,749	+		IAI47_15085	0.82	+0.2
3,182,750	-		IAI47_15085	0.83	-0.6
3,182,750	-		IAI47_15085	0.83	+1.7
3,182,750	-		IAI47_15085	0.83	-0.5
3,182,750	-		IAI47_15085	0.83	-1.2
3,182,789	+		IAI47_15085	0.85	-0.2
3,182,789	+		IAI47_15085	0.85	+0.1
3,182,789	+		IAI47_15085	0.85	+1.6
3,182,789	+		IAI47_15085	0.85	+0.6
3,182,789	+		IAI47_15085	0.85	+2.8
3,182,789	+		IAI47_15085	0.85	+0.0
3,182,790	-		IAI47_15085	0.85	-2.4
3,182,790	-		IAI47_15085	0.85	+0.0
3,182,843	+		IAI47_15085	0.88	+0.8
3,182,844	-		IAI47_15085	0.88	+1.1
3,182,844	-		IAI47_15085	0.88	+1.1
3,182,884	-				+0.3
3,182,911	-				-0.8
3,182,911	-				-0.0
3,182,974	+				+0.1
3,182,974	+				-1.0
3,182,974	+				-0.9
3,182,974	+				-0.5
3,182,974	+				+0.3
3,182,974	+				+1.0
3,182,974	+				-2.7
3,182,975	-				-0.9
3,182,975	-				-1.2
3,182,975	-				-1.3
3,182,975	-				+1.8
3,182,977	+				-1.0
3,182,978	-				-1.2
3,182,978	-				-0.4
3,182,978	-				+1.3
3,182,985	-				+2.3
3,182,985	-				+2.0
3,183,023	+				+0.2
3,183,024	-				+0.2
3,183,024	-				-2.3
3,183,045	-				+0.4
3,183,056	+				+1.5
3,183,056	+				+0.8
3,183,057	-				-2.6
3,183,057	-				+1.5
3,183,057	-				-1.0
3,183,057	-				+2.8
3,183,083	-				-2.6
3,183,104	+				+0.1
3,183,104	+				-0.9
3,183,104	+				+1.7
3,183,104	+				-1.1
3,183,104	+				+1.3
3,183,104	+				-0.9
3,183,104	+				-1.3
3,183,105	-				-0.4
3,183,105	-				-0.6
3,183,105	-				-2.0
3,183,105	-				+1.0
3,183,105	-				+0.6
3,183,174	+				-2.3
3,183,175	-				+1.7
3,183,206	+				+2.6
3,183,206	+				+0.0
3,183,207	-				+0.0
3,183,210	+				-2.1
3,183,210	+				+1.1
3,183,211	-				-0.4
3,183,211	-				+1.0
3,183,211	-				+0.7
3,183,211	-				+1.2
3,183,211	-				+1.6
3,183,211	-				+0.4
3,183,211	-				+2.8
3,183,212	+				-2.2
3,183,212	+				-1.7
3,183,212	+				+0.4
3,183,212	+				+0.3
3,183,212	+				-1.3
3,183,213	-				-0.3
3,183,213	-				+0.7
3,183,213	-				-1.2
3,183,213	-				+2.5
3,183,213	-				-1.5
3,183,213	-				+0.9
3,183,229	+				-0.2
3,183,229	+				-1.1
3,183,230	-				+0.3
3,183,273	+				-1.1
3,183,274	-				-0.6
3,183,319	+		IAI47_15090	0.20	-0.2
3,183,319	+		IAI47_15090	0.20	-1.9
3,183,320	-		IAI47_15090	0.20	-1.7
3,183,320	-		IAI47_15090	0.20	-1.5
3,183,320	-		IAI47_15090	0.20	-1.1
3,183,343	+		IAI47_15090	0.28	-1.2
3,183,344	-		IAI47_15090	0.29	-0.0
3,183,360	+		IAI47_15090	0.34	-3.1
3,183,360	+		IAI47_15090	0.34	+0.4
3,183,360	+		IAI47_15090	0.34	-2.5
3,183,360	+		IAI47_15090	0.34	-2.4
3,183,360	+		IAI47_15090	0.34	-1.5
3,183,361	-		IAI47_15090	0.34	-0.3
3,183,361	-		IAI47_15090	0.34	-0.6
3,183,361	-		IAI47_15090	0.34	+0.3
3,183,361	-		IAI47_15090	0.34	-1.0
3,183,420	+		IAI47_15090	0.54	+0.0
3,183,469	-		IAI47_15090	0.71	-1.1
3,183,533	+				+1.5
3,183,533	+				-0.6
3,183,534	-				-0.6
3,183,534	-				+0.7
3,183,534	-				-0.7
3,183,541	+				+0.4
3,183,542	-				-1.0
3,183,542	-				+1.2
3,183,542	-				+1.2
3,183,619	+		IAI47_15095	0.20	-1.4
3,183,619	+		IAI47_15095	0.20	-0.3
3,183,619	+		IAI47_15095	0.20	-0.9
3,183,619	+		IAI47_15095	0.20	+1.9
3,183,619	+		IAI47_15095	0.20	+1.5
3,183,620	-		IAI47_15095	0.20	-1.4
3,183,620	-		IAI47_15095	0.20	-1.3
3,183,620	-		IAI47_15095	0.20	+2.1
3,183,659	+		IAI47_15095	0.31	-0.6
3,183,659	+		IAI47_15095	0.31	-0.6
3,183,659	+		IAI47_15095	0.31	-1.4
3,183,659	+		IAI47_15095	0.31	+0.3
3,183,659	+		IAI47_15095	0.31	-1.4
3,183,660	-		IAI47_15095	0.32	+1.4
3,183,660	-		IAI47_15095	0.32	+1.8
3,183,828	+		IAI47_15095	0.80	+0.5
3,183,829	-		IAI47_15095	0.80	+2.4
3,183,829	-		IAI47_15095	0.80	-1.2
3,183,897	+				+3.0
3,183,897	+				+2.8
3,183,897	+				+0.7
3,183,897	+				-0.3
3,183,898	-				+0.8
3,183,898	-				-1.2
3,183,898	-				-0.2
3,183,919	+				-1.2
3,183,919	+				+0.2
3,183,919	+				+1.0
3,183,919	+				+1.4
3,183,920	-				-1.6
3,183,920	-				+0.0
3,184,013	+		IAI47_15100	0.25	+1.3
3,184,013	+		IAI47_15100	0.25	-2.5
3,184,014	-		IAI47_15100	0.26	-0.5
3,184,014	-		IAI47_15100	0.26	-0.2
3,184,014	-		IAI47_15100	0.26	+0.3
3,184,014	-		IAI47_15100	0.26	-1.9
3,184,014	-		IAI47_15100	0.26	+0.5
3,184,081	+		IAI47_15100	0.40	+0.2
3,184,081	+		IAI47_15100	0.40	+0.8
3,184,081	+		IAI47_15100	0.40	-3.2
3,184,081	+		IAI47_15100	0.40	+0.5
3,184,082	-		IAI47_15100	0.40	+1.6
3,184,082	-		IAI47_15100	0.40	-0.2
3,184,082	-		IAI47_15100	0.40	+0.5
3,184,082	-		IAI47_15100	0.40	-0.9
3,184,082	-		IAI47_15100	0.40	+1.5
3,184,082	-		IAI47_15100	0.40	+0.1
3,184,082	-		IAI47_15100	0.40	+0.7
3,184,231	+		IAI47_15100	0.72	-2.0
3,184,231	+		IAI47_15100	0.72	+1.3
3,184,235	+		IAI47_15100	0.73	+0.0
3,184,235	+		IAI47_15100	0.73	+1.7
3,184,235	+		IAI47_15100	0.73	-0.0
3,184,235	+		IAI47_15100	0.73	+0.5
3,184,266	+		IAI47_15100	0.79	+1.7
3,184,266	+		IAI47_15100	0.79	-0.2
3,184,266	+		IAI47_15100	0.79	+0.8
3,184,266	+		IAI47_15100	0.79	-2.1
3,184,267	-		IAI47_15100	0.80	-0.8
3,184,267	-		IAI47_15100	0.80	-1.9
3,184,306	+		IAI47_15100	0.88	+1.4
3,184,306	+		IAI47_15100	0.88	+0.6
3,184,306	+		IAI47_15100	0.88	-2.8
3,184,306	+		IAI47_15100	0.88	+0.4
3,184,306	+		IAI47_15100	0.88	-1.6
3,184,306	+		IAI47_15100	0.88	+0.1
3,184,307	-		IAI47_15100	0.88	-0.9
3,184,307	-		IAI47_15100	0.88	-0.0
3,184,307	-		IAI47_15100	0.88	-0.3
3,184,321	+				+1.0
3,184,321	+				-1.7
3,184,321	+				-0.8
3,184,321	+				+3.9
3,184,321	+				+0.6
3,184,322	-				+0.3
3,184,322	-				-0.7
3,184,322	-				-0.2
3,184,322	-				-2.0
3,184,322	-				-0.8
3,184,322	-				-0.9
3,184,341	+				-1.2
3,184,341	+				-1.2
3,184,361	+				-0.9
3,184,361	+				+1.0
3,184,383	+				+0.2
3,184,383	+				-0.4
3,184,383	+				-0.3
3,184,384	-				+1.6
3,184,384	-				-1.4
3,184,384	-				-1.2
3,184,407	-				-1.6
3,184,410	+				-1.0
3,184,411	-				-1.3
3,184,411	-				-0.2
3,184,411	-				+2.0
3,184,411	-				+2.1
3,184,411	-				+0.6
3,184,411	-				+0.4
3,184,414	+				+0.4
3,184,414	+				-1.9
3,184,415	-				+0.6
3,184,415	-				+0.5
3,184,431	+				-1.8
3,184,431	+				+0.0
3,184,432	-				-0.4
3,184,432	-				-2.5
3,184,432	-				+2.5
3,184,432	-				-0.2
3,184,479	-				+0.6
3,184,486	-				+0.2
3,184,486	-				+1.5
3,184,520	+				+2.0
3,184,521	-				+0.3
3,184,521	-				-2.3