Strain Fitness in Pantoea sp. MT58 around IAI47_12675

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,663,475	+		IAI47_12665	0.35	-2.0
2,663,475	+		IAI47_12665	0.35	-1.1
2,663,475	+		IAI47_12665	0.35	+0.2
2,663,476	-		IAI47_12665	0.36	+1.9
2,663,476	-		IAI47_12665	0.36	-0.2
2,663,492	+		IAI47_12665	0.45	+0.2
2,663,492	+		IAI47_12665	0.45	+1.7
2,663,521	-		IAI47_12665	0.62	-1.4
2,663,521	-		IAI47_12665	0.62	+1.4
2,663,535	-		IAI47_12665	0.71	+0.1
2,663,583	+				+1.4
2,663,583	+				-2.5
2,663,583	+				+1.5
2,663,584	-				+0.1
2,663,601	+				+1.2
2,663,601	+				+1.8
2,663,601	+				+1.1
2,663,601	+				+0.2
2,663,601	+				-0.9
2,663,601	+				+0.1
2,663,602	-				-1.1
2,663,602	-				+0.8
2,663,602	-				-1.5
2,663,602	-				+0.5
2,663,602	-				+1.4
2,663,640	+				+1.8
2,663,640	+				+0.2
2,663,640	+				+1.2
2,663,657	+				-1.8
2,663,657	+				+0.8
2,663,657	+				-1.0
2,663,657	+				-0.4
2,663,658	-				+1.5
2,663,658	-				-1.1
2,663,658	-				-1.1
2,663,658	-				+1.1
2,663,665	-				+1.1
2,663,713	+				+0.6
2,663,726	-				-0.0
2,663,782	-				+1.3
2,663,845	+				+0.2
2,663,846	-				-1.1
2,663,846	-				+1.8
2,663,846	-				+0.1
2,663,846	-				+0.5
2,663,849	+				-0.2
2,663,850	-				-0.5
2,663,850	-				-0.3
2,663,858	+				-0.9
2,663,859	-				+3.5
2,663,864	+				-0.2
2,663,929	-		IAI47_12670	0.12	+0.4
2,663,929	-		IAI47_12670	0.12	-0.7
2,663,937	+		IAI47_12670	0.13	-1.5
2,663,937	+		IAI47_12670	0.13	+1.4
2,663,937	+		IAI47_12670	0.13	+0.8
2,663,938	-		IAI47_12670	0.13	-0.9
2,663,938	-		IAI47_12670	0.13	-0.2
2,663,938	-		IAI47_12670	0.13	+2.5
2,663,938	-		IAI47_12670	0.13	+1.2
2,663,938	-		IAI47_12670	0.13	-1.8
2,663,945	+		IAI47_12670	0.14	-0.4
2,663,945	+		IAI47_12670	0.14	+2.3
2,663,945	+		IAI47_12670	0.14	-0.8
2,663,945	+		IAI47_12670	0.14	-1.8
2,663,946	-		IAI47_12670	0.15	-1.5
2,663,946	-		IAI47_12670	0.15	-0.4
2,663,946	-		IAI47_12670	0.15	-0.5
2,663,946	-		IAI47_12670	0.15	-1.0
2,663,976	+		IAI47_12670	0.20	-0.5
2,663,976	+		IAI47_12670	0.20	+2.6
2,663,989	-		IAI47_12670	0.22	+0.2
2,663,989	-		IAI47_12670	0.22	+1.5
2,664,047	+		IAI47_12670	0.32	+1.0
2,664,047	+		IAI47_12670	0.32	-0.1
2,664,047	+		IAI47_12670	0.32	+0.6
2,664,047	+		IAI47_12670	0.32	+1.5
2,664,047	+		IAI47_12670	0.32	-1.3
2,664,078	+		IAI47_12670	0.38	+1.4
2,664,079	-		IAI47_12670	0.38	+0.7
2,664,084	+		IAI47_12670	0.39	+0.9
2,664,084	+		IAI47_12670	0.39	-1.1
2,664,085	-		IAI47_12670	0.39	+0.8
2,664,085	-		IAI47_12670	0.39	-2.4
2,664,085	-		IAI47_12670	0.39	+1.0
2,664,148	-		IAI47_12670	0.50	-1.5
2,664,198	+		IAI47_12670	0.59	+0.0
2,664,199	-		IAI47_12670	0.59	-0.0
2,664,199	-		IAI47_12670	0.59	-1.3
2,664,215	+		IAI47_12670	0.62	-0.1
2,664,215	+		IAI47_12670	0.62	+1.3
2,664,215	+		IAI47_12670	0.62	-0.2
2,664,215	+		IAI47_12670	0.62	+1.6
2,664,215	+		IAI47_12670	0.62	+0.1
2,664,215	+		IAI47_12670	0.62	+1.1
2,664,216	-		IAI47_12670	0.62	-1.9
2,664,216	-		IAI47_12670	0.62	-0.6
2,664,216	-		IAI47_12670	0.62	+1.8
2,664,216	-		IAI47_12670	0.62	-0.4
2,664,216	-		IAI47_12670	0.62	+1.5
2,664,216	-		IAI47_12670	0.62	+0.4
2,664,216	-		IAI47_12670	0.62	-0.5
2,664,216	-		IAI47_12670	0.62	-1.3
2,664,216	-		IAI47_12670	0.62	-1.1
2,664,216	-		IAI47_12670	0.62	-1.0
2,664,216	-		IAI47_12670	0.62	+1.1
2,664,216	-		IAI47_12670	0.62	+0.5
2,664,216	-		IAI47_12670	0.62	+1.3
2,664,236	+		IAI47_12670	0.65	-0.0
2,664,237	-		IAI47_12670	0.66	+2.2
2,664,261	-		IAI47_12670	0.70	+0.8
2,664,261	-		IAI47_12670	0.70	-0.2
2,664,359	+		IAI47_12670	0.87	+1.1
2,664,366	+		IAI47_12670	0.88	+0.3
2,664,367	-		IAI47_12670	0.88	+0.3
2,664,367	-		IAI47_12670	0.88	+1.4
2,664,381	+				-0.7
2,664,381	+				-1.3
2,664,381	+				-0.3
2,664,382	-				-0.8
2,664,394	+				+0.5
2,664,395	-				+0.9
2,664,395	-				+0.5
2,664,395	-				-2.1
2,664,415	+				+0.2
2,664,415	+				+0.6
2,664,415	+				-1.2
2,664,416	-				+0.2
2,664,416	-				+0.3
2,664,416	-				-0.8
2,664,480	+				-2.0
2,664,480	+				+0.2
2,664,481	-				-0.5
2,664,481	-				+1.4
2,664,497	+				+0.8
2,664,497	+				-0.2
2,664,497	+				-1.1
2,664,497	+				-1.0
2,664,498	-				-0.4
2,664,498	-				+2.1
2,664,498	-				-0.0
2,664,498	-				+1.3
2,664,498	-				-0.7
2,664,498	-				-0.9
2,664,498	-				+0.6
2,664,538	-				-0.4
2,664,538	-				-2.1
2,664,538	-				-0.5
2,664,558	-				+1.1
2,664,565	-				-0.5
2,664,577	+				-2.4
2,664,578	-				-1.8
2,664,578	-				+0.2
2,664,743	+		IAI47_12675	0.19	-1.9
2,664,743	+		IAI47_12675	0.19	+0.3
2,664,743	+		IAI47_12675	0.19	+1.4
2,664,744	-		IAI47_12675	0.19	-0.0
2,664,744	-		IAI47_12675	0.19	+1.0
2,664,744	-		IAI47_12675	0.19	+1.2
2,664,884	+		IAI47_12675	0.28	+0.9
2,664,884	+		IAI47_12675	0.28	-1.9
2,664,885	-		IAI47_12675	0.28	+1.6
2,664,886	+		IAI47_12675	0.28	-0.4
2,664,886	+		IAI47_12675	0.28	+1.9
2,664,886	+		IAI47_12675	0.28	-1.2
2,664,886	+		IAI47_12675	0.28	+2.9
2,664,886	+		IAI47_12675	0.28	+1.3
2,664,886	+		IAI47_12675	0.28	+1.7
2,664,887	-		IAI47_12675	0.28	-0.2
2,664,887	-		IAI47_12675	0.28	-1.5
2,664,887	-		IAI47_12675	0.28	-2.5
2,664,887	-		IAI47_12675	0.28	-0.7
2,664,905	-		IAI47_12675	0.29	-0.6
2,664,905	-		IAI47_12675	0.29	-0.5
2,664,905	-		IAI47_12675	0.29	-0.3
2,664,905	-		IAI47_12675	0.29	+0.5
2,664,905	-		IAI47_12675	0.29	+1.5
2,664,905	-		IAI47_12675	0.29	-1.5
2,664,905	-		IAI47_12675	0.29	+0.3
2,664,922	+		IAI47_12675	0.30	-0.1
2,664,922	+		IAI47_12675	0.30	+1.6
2,664,922	+		IAI47_12675	0.30	-1.5
2,664,922	+		IAI47_12675	0.30	-2.0
2,664,922	+		IAI47_12675	0.30	+0.3
2,664,922	+		IAI47_12675	0.30	-0.2
2,664,923	-		IAI47_12675	0.30	+3.2
2,664,923	-		IAI47_12675	0.30	+1.0
2,664,923	-		IAI47_12675	0.30	-1.3
2,664,923	-		IAI47_12675	0.30	+0.4
2,664,923	-		IAI47_12675	0.30	+3.4
2,664,923	-		IAI47_12675	0.30	+0.1
2,664,980	+		IAI47_12675	0.34	+0.3
2,664,981	-		IAI47_12675	0.34	-0.3
2,664,981	-		IAI47_12675	0.34	-0.7
2,665,065	+		IAI47_12675	0.39	+0.5
2,665,072	+		IAI47_12675	0.39	-0.3
2,665,079	+		IAI47_12675	0.40	+0.2
2,665,079	+				+0.9
2,665,079	+		IAI47_12675	0.40	-1.4
2,665,079	+		IAI47_12675	0.40	-1.4
2,665,080	-		IAI47_12675	0.40	+0.0
2,665,143	-		IAI47_12675	0.43	-0.4
2,665,143	-		IAI47_12675	0.43	+0.3
2,665,207	+		IAI47_12675	0.47	-0.4
2,665,207	+		IAI47_12675	0.47	+0.9
2,665,208	-		IAI47_12675	0.47	+2.4
2,665,208	-		IAI47_12675	0.47	+0.4
2,665,208	-		IAI47_12675	0.47	-2.3
2,665,214	+		IAI47_12675	0.48	-1.7
2,665,214	+		IAI47_12675	0.48	-0.1
2,665,214	+		IAI47_12675	0.48	-0.5
2,665,214	+		IAI47_12675	0.48	+1.7
2,665,214	+		IAI47_12675	0.48	+0.3
2,665,215	-		IAI47_12675	0.48	-0.8
2,665,215	-		IAI47_12675	0.48	-2.4
2,665,215	-		IAI47_12675	0.48	+1.5
2,665,215	-		IAI47_12675	0.48	-0.7
2,665,215	-		IAI47_12675	0.48	+0.0
2,665,215	-		IAI47_12675	0.48	-0.9
2,665,223	+		IAI47_12675	0.48	+1.0
2,665,223	+		IAI47_12675	0.48	-1.3
2,665,224	-		IAI47_12675	0.48	+0.0
2,665,224	-		IAI47_12675	0.48	-1.3
2,665,225	+		IAI47_12675	0.48	+1.1
2,665,225	+		IAI47_12675	0.48	-2.3
2,665,225	+		IAI47_12675	0.48	+1.3
2,665,225	+		IAI47_12675	0.48	+0.6
2,665,226	-		IAI47_12675	0.48	-1.5
2,665,226	-		IAI47_12675	0.48	+1.6
2,665,226	-		IAI47_12675	0.48	-0.6
2,665,226	-		IAI47_12675	0.48	+0.1
2,665,226	-		IAI47_12675	0.48	-0.5
2,665,226	-		IAI47_12675	0.48	+2.6
2,665,241	+		IAI47_12675	0.49	-0.8
2,665,242	-		IAI47_12675	0.49	-0.9
2,665,268	+		IAI47_12675	0.51	-2.0
2,665,268	-		IAI47_12675	0.51	-0.7
2,665,389	-		IAI47_12675	0.58	-0.1
2,665,389	-		IAI47_12675	0.58	+3.5
2,665,389	-		IAI47_12675	0.58	-2.3
2,665,389	-		IAI47_12675	0.58	+0.2
2,665,389	-		IAI47_12675	0.58	-0.3
2,665,391	-		IAI47_12675	0.59	-1.5
2,665,448	-		IAI47_12675	0.62	-0.5
2,665,448	-		IAI47_12675	0.62	-2.2
2,665,471	+		IAI47_12675	0.63	+1.7
2,665,471	+		IAI47_12675	0.63	+0.7
2,665,471	+		IAI47_12675	0.63	+2.9
2,665,471	+		IAI47_12675	0.63	-1.1
2,665,471	+		IAI47_12675	0.63	+0.4
2,665,471	+		IAI47_12675	0.63	+0.1
2,665,471	+		IAI47_12675	0.63	-1.5
2,665,471	+		IAI47_12675	0.63	+1.6
2,665,472	-		IAI47_12675	0.63	-1.7
2,665,472	-		IAI47_12675	0.63	-0.9
2,665,472	-		IAI47_12675	0.63	+0.7
2,665,472	-		IAI47_12675	0.63	+1.2
2,665,472	-		IAI47_12675	0.63	+2.0
2,665,472	-		IAI47_12675	0.63	+1.2
2,665,481	+		IAI47_12675	0.64	+0.5
2,665,481	+		IAI47_12675	0.64	-1.2
2,665,481	+		IAI47_12675	0.64	-0.1
2,665,481	+		IAI47_12675	0.64	-2.7
2,665,481	+		IAI47_12675	0.64	-0.4
2,665,481	+		IAI47_12675	0.64	-0.0
2,665,482	-		IAI47_12675	0.64	+0.4
2,665,482	-		IAI47_12675	0.64	+1.4
2,665,482	-		IAI47_12675	0.64	-0.5
2,665,482	-		IAI47_12675	0.64	+1.3
2,665,482	-		IAI47_12675	0.64	+1.7
2,665,482	-		IAI47_12675	0.64	+1.5
2,665,482	-		IAI47_12675	0.64	+0.6
2,665,482	-		IAI47_12675	0.64	-0.3
2,665,482	-		IAI47_12675	0.64	-1.0
2,665,487	+		IAI47_12675	0.64	-1.1
2,665,488	-		IAI47_12675	0.64	-2.4
2,665,493	+		IAI47_12675	0.65	-1.3
2,665,494	-		IAI47_12675	0.65	-1.5
2,665,517	+		IAI47_12675	0.66	+0.1
2,665,559	+		IAI47_12675	0.69	-2.9
2,665,560	-		IAI47_12675	0.69	+0.4
2,665,589	+		IAI47_12675	0.71	+0.2
2,665,590	-		IAI47_12675	0.71	+0.3
2,665,590	-		IAI47_12675	0.71	-0.2
2,665,598	+		IAI47_12675	0.71	+1.8
2,665,643	+		IAI47_12675	0.74	-1.5
2,665,644	-		IAI47_12675	0.74	-0.5
2,665,644	-		IAI47_12675	0.74	+1.3
2,665,644	-		IAI47_12675	0.74	+1.6
2,665,681	-		IAI47_12675	0.76	+0.2
2,665,690	+		IAI47_12675	0.77	+0.9
2,665,690	+		IAI47_12675	0.77	-2.1
2,665,690	+		IAI47_12675	0.77	+0.1
2,665,691	-		IAI47_12675	0.77	+2.2
2,665,691	-		IAI47_12675	0.77	+0.6
2,665,691	-		IAI47_12675	0.77	+1.4
2,665,691	-		IAI47_12675	0.77	-0.7
2,665,738	-		IAI47_12675	0.80	+0.8
2,665,772	+		IAI47_12675	0.82	-0.8
2,665,772	+		IAI47_12675	0.82	-0.6
2,665,772	+		IAI47_12675	0.82	+0.0
2,665,773	-		IAI47_12675	0.82	+0.2
2,665,773	-		IAI47_12675	0.82	+2.1
2,665,799	+		IAI47_12675	0.83	-1.7
2,665,800	-		IAI47_12675	0.83	+2.0
2,665,800	-		IAI47_12675	0.83	-1.3
2,665,811	+		IAI47_12675	0.84	-2.5
2,665,818	+		IAI47_12675	0.84	-1.9
2,665,819	-		IAI47_12675	0.85	+1.5
2,665,840	-		IAI47_12675	0.86	-0.7
2,665,840	-		IAI47_12675	0.86	+1.2
2,665,840	-		IAI47_12675	0.86	-0.6
2,665,883	+		IAI47_12675	0.88	+1.1
2,665,884	-		IAI47_12675	0.89	-1.0
2,665,895	+		IAI47_12675	0.89	-1.1
2,665,929	+				+0.1
2,665,929	+				-0.9
2,665,929	+				-1.9
2,665,929	+				-0.0
2,665,963	+				+0.3
2,665,963	+				+0.1
2,665,964	-				-1.6
2,665,964	-				-0.7
2,665,964	-				-1.1
2,665,986	+				+0.8
2,665,986	+				+2.3
2,665,987	-				+1.0
2,665,987	-				-1.7
2,665,987	-				+0.7
2,665,994	+				-1.0
2,666,030	+				-0.1
2,666,031	-				-0.5
2,666,031	-				+4.2
2,666,089	-				-0.4
2,666,089	-				+1.5
2,666,116	+				-2.4
2,666,154	+				+1.7
2,666,154	+				+0.9
2,666,155	-				+0.2
2,666,155	-				+0.8
2,666,177	-				+0.4
2,666,177	-				-0.2
2,666,206	+		IAI47_12680	0.12	-0.5
2,666,206	+		IAI47_12680	0.12	+0.9
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2,666,974	-		IAI47_12680	0.72	-1.7
2,666,974	-		IAI47_12680	0.72	-1.9
2,667,041	+		IAI47_12680	0.77	+1.5
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