Strain Fitness in Pantoea sp. MT58 around IAI47_12645

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,658,242	+				-0.2
2,658,242	+				-1.5
2,658,242	+				-0.7
2,658,242	+				+1.3
2,658,243	-				+0.1
2,658,243	-				-0.4
2,658,254	+				-2.4
2,658,254	+				+0.2
2,658,254	+				+0.6
2,658,254	+				-1.1
2,658,254	+				-0.5
2,658,254	+				+1.7
2,658,255	-				+0.9
2,658,255	-				-1.1
2,658,255	-				-0.4
2,658,255	-				+1.4
2,658,255	-				+1.0
2,658,255	-				+0.5
2,658,255	-				+0.0
2,658,304	+				-0.3
2,658,325	-				+0.4
2,658,352	+				+0.7
2,658,352	+				-2.1
2,658,353	-				-0.6
2,658,353	-				+1.8
2,658,353	-				-0.6
2,658,353	-				+0.3
2,658,357	+				-2.3
2,658,357	+				+1.3
2,658,358	-				-0.4
2,658,358	-				+0.8
2,658,358	-				-1.8
2,658,375	+				-1.7
2,658,375	+				-1.2
2,658,375	+				+1.5
2,658,375	+				+0.1
2,658,375	+				+1.1
2,658,376	-				+1.0
2,658,376	-				+1.5
2,658,376	-				+1.2
2,658,378	+				+0.2
2,658,379	-				+2.3
2,658,379	-				-0.6
2,658,388	+				-2.4
2,658,389	-				+1.0
2,658,389	-				+0.9
2,658,389	-				-0.1
2,658,389	-				+0.9
2,658,389	-				+0.8
2,658,389	-				+1.1
2,658,400	+				-1.6
2,658,400	+				+1.3
2,658,401	-				-2.3
2,658,401	-				+0.8
2,658,401	-				+0.9
2,658,401	-				+1.4
2,658,401	-				-0.7
2,658,449	+		IAI47_12640	0.18	-2.0
2,658,449	+		IAI47_12640	0.18	-1.0
2,658,449	+		IAI47_12640	0.18	+0.3
2,658,450	-		IAI47_12640	0.19	+0.1
2,658,450	-		IAI47_12640	0.19	-2.2
2,658,450	-		IAI47_12640	0.19	-1.8
2,658,450	-		IAI47_12640	0.19	-0.6
2,658,450	-		IAI47_12640	0.19	-1.7
2,658,450	-		IAI47_12640	0.19	+0.3
2,658,455	-		IAI47_12640	0.20	-2.3
2,658,455	-		IAI47_12640	0.20	+0.9
2,658,497	+		IAI47_12640	0.28	+3.1
2,658,498	-		IAI47_12640	0.28	-1.9
2,658,498	-		IAI47_12640	0.28	-1.6
2,658,498	-		IAI47_12640	0.28	+0.5
2,658,500	+		IAI47_12640	0.29	+0.6
2,658,500	+		IAI47_12640	0.29	+0.2
2,658,501	-		IAI47_12640	0.29	+0.0
2,658,501	-		IAI47_12640	0.29	+1.0
2,658,501	-		IAI47_12640	0.29	+0.9
2,658,501	-		IAI47_12640	0.29	-0.4
2,658,552	+		IAI47_12640	0.39	+0.9
2,658,552	+		IAI47_12640	0.39	-1.1
2,658,552	+		IAI47_12640	0.39	-1.9
2,658,552	+		IAI47_12640	0.39	+1.0
2,658,553	-		IAI47_12640	0.40	+3.0
2,658,553	-		IAI47_12640	0.40	+2.0
2,658,553	-		IAI47_12640	0.40	-0.2
2,658,553	-		IAI47_12640	0.40	-1.3
2,658,587	+		IAI47_12640	0.47	-2.6
2,658,587	+		IAI47_12640	0.47	+2.0
2,658,588	-		IAI47_12640	0.47	+2.5
2,658,588	-		IAI47_12640	0.47	-0.4
2,658,588	-		IAI47_12640	0.47	-0.2
2,658,588	-		IAI47_12640	0.47	+0.0
2,658,593	+		IAI47_12640	0.48	+2.4
2,658,593	+		IAI47_12640	0.48	+0.3
2,658,594	-		IAI47_12640	0.48	+0.2
2,658,594	-		IAI47_12640	0.48	-1.1
2,658,594	-		IAI47_12640	0.48	-1.2
2,658,597	+		IAI47_12640	0.49	+0.5
2,658,597	+		IAI47_12640	0.49	+1.5
2,658,598	-		IAI47_12640	0.49	+0.8
2,658,598	-		IAI47_12640	0.49	-0.2
2,658,598	-		IAI47_12640	0.49	+0.5
2,658,603	+		IAI47_12640	0.50	-1.6
2,658,603	+		IAI47_12640	0.50	-2.8
2,658,603	+		IAI47_12640	0.50	-1.6
2,658,603	+		IAI47_12640	0.50	+0.5
2,658,603	+		IAI47_12640	0.50	+2.5
2,658,603	+		IAI47_12640	0.50	-1.2
2,658,604	-		IAI47_12640	0.50	-1.4
2,658,609	+		IAI47_12640	0.51	-0.9
2,658,609	+		IAI47_12640	0.51	-1.8
2,658,609	+		IAI47_12640	0.51	+1.8
2,658,610	-		IAI47_12640	0.51	-1.4
2,658,610	-		IAI47_12640	0.51	+0.5
2,658,610	-		IAI47_12640	0.51	-0.9
2,658,652	-		IAI47_12640	0.60	+0.9
2,658,652	-		IAI47_12640	0.60	+0.1
2,658,673	+		IAI47_12640	0.64	+2.3
2,658,674	-		IAI47_12640	0.64	-1.6
2,658,674	-		IAI47_12640	0.64	+2.3
2,658,674	-		IAI47_12640	0.64	-0.5
2,658,821	+				+2.3
2,658,847	+				+0.2
2,658,848	-				-1.0
2,658,874	+				-1.7
2,658,875	-				-0.1
2,658,877	+				+0.6
2,658,877	+				-1.7
2,658,877	+				-1.6
2,658,878	-				-0.2
2,658,878	-				-0.8
2,658,878	-				+0.4
2,658,878	-				+0.4
2,658,878	-				+2.0
2,658,883	+				-1.6
2,658,883	+				-0.4
2,658,896	+				-0.2
2,658,913	+				-1.0
2,658,914	-				-1.6
2,658,968	+				-1.0
2,658,979	+				-0.1
2,658,979	+				+0.4
2,658,980	-				-1.5
2,658,980	-				+1.1
2,658,999	+				+0.4
2,658,999	+				-0.2
2,659,020	+				-0.6
2,659,035	+				-0.9
2,659,035	+				-0.2
2,659,035	+				-0.0
2,659,035	+				-1.4
2,659,035	+				+1.2
2,659,035	+				-0.8
2,659,036	-				-2.2
2,659,036	-				-2.9
2,659,036	-				+1.5
2,659,036	-				+0.1
2,659,036	-				-1.1
2,659,036	-				-1.6
2,659,041	+				-2.0
2,659,041	+				-2.9
2,659,041	+				-1.5
2,659,041	+				-2.3
2,659,067	+				+0.9
2,659,067	+				+1.8
2,659,067	+				+0.9
2,659,067	+				-0.9
2,659,067	+				-1.6
2,659,067	+				-2.8
2,659,087	+				-0.7
2,659,114	+				-0.9
2,659,114	+				-2.0
2,659,114	+				-2.4
2,659,214	+				-2.1
2,659,284	+				-2.2
2,659,463	+		IAI47_12645	0.25	-1.4
2,659,557	+		IAI47_12645	0.33	-1.4
2,659,557	+		IAI47_12645	0.33	-1.9
2,659,557	+		IAI47_12645	0.33	-2.0
2,659,674	+		IAI47_12645	0.44	-2.4
2,659,674	+		IAI47_12645	0.44	-2.5
2,659,674	+		IAI47_12645	0.44	-2.0
2,659,710	+		IAI47_12645	0.48	-1.7
2,659,780	+		IAI47_12645	0.54	-2.2
2,659,913	+		IAI47_12645	0.67	-1.8
2,659,979	+		IAI47_12645	0.73	-1.2
2,660,034	+		IAI47_12645	0.78	-2.2
2,660,034	+		IAI47_12645	0.78	-0.4
2,660,034	+		IAI47_12645	0.78	-1.6
2,660,074	+		IAI47_12645	0.82	+1.2
2,660,105	+		IAI47_12645	0.85	-2.1
2,660,105	+		IAI47_12645	0.85	-1.2
2,660,231	+				-2.8
2,660,251	+				-1.1
2,660,251	+				+0.2
2,660,251	+				-0.8
2,660,268	+				+1.8
2,660,268	+				+0.5
2,660,268	+				+0.5
2,660,268	+				-0.8
2,660,268	+				+0.4
2,660,274	+				-0.8
2,660,274	+				-2.3
2,660,274	+				+0.5
2,660,275	-				-0.4
2,660,275	-				-0.9
2,660,283	+				+0.8
2,660,283	+				-0.7
2,660,320	+				+0.8
2,660,321	-				-0.4
2,660,321	-				-0.0
2,660,321	-				+0.5
2,660,321	-				+0.8
2,660,324	-				+1.2
2,660,365	-				+3.0
2,660,369	+				+2.5
2,660,392	-				+1.8
2,660,441	+		IAI47_12650	0.16	-1.8
2,660,441	+		IAI47_12650	0.16	+0.5
2,660,441	+		IAI47_12650	0.16	+0.2
2,660,441	+		IAI47_12650	0.16	+0.9
2,660,442	-		IAI47_12650	0.16	+1.6
2,660,452	-		IAI47_12650	0.18	+0.1
2,660,467	+		IAI47_12650	0.21	-0.9
2,660,468	-		IAI47_12650	0.21	+0.8
2,660,468	-		IAI47_12650	0.21	-0.4
2,660,468	-		IAI47_12650	0.21	+1.0
2,660,543	+		IAI47_12650	0.37	-1.9
2,660,543	+		IAI47_12650	0.37	-0.0
2,660,544	-		IAI47_12650	0.38	-0.9
2,660,544	-		IAI47_12650	0.38	+1.0
2,660,616	+		IAI47_12650	0.53	-0.7
2,660,617	-		IAI47_12650	0.53	+0.9
2,660,637	-		IAI47_12650	0.57	+0.9
2,660,652	+		IAI47_12650	0.61	-0.4
2,660,653	-		IAI47_12650	0.61	-1.5
2,660,734	+		IAI47_12650	0.78	+1.5
2,660,735	-		IAI47_12650	0.78	-0.4
2,660,735	-		IAI47_12650	0.78	-0.5
2,660,786	+		IAI47_12650	0.89	+0.9
2,660,786	+		IAI47_12650	0.89	-0.1
2,660,787	-		IAI47_12650	0.90	-2.2
2,660,828	+				-1.0
2,660,828	+				+2.2
2,660,828	+				-0.0
2,660,829	-				-2.5
2,660,829	-				+0.1
2,660,829	-				-1.5
2,660,857	+				+0.5
2,660,858	-				-0.5
2,660,858	-				+0.2
2,660,865	+				-1.8
2,660,865	+				+0.6
2,660,865	+				+0.8
2,660,871	+				+1.1
2,660,872	-				-1.2
2,660,948	+				-1.0
2,660,966	+				+0.2
2,660,966	+				+1.1
2,660,966	+				-1.6
2,660,967	-				+2.4
2,660,967	-				-1.1
2,660,969	-				-0.8
2,660,983	+				-0.3
2,660,984	-				+0.7
2,660,986	+				-1.0
2,660,987	-				-0.4
2,660,987	-				+0.5
2,661,002	+				+0.2
2,661,023	+				-1.3
2,661,023	+				-1.1
2,661,023	+				-0.2
2,661,023	+				+3.0
2,661,024	-				+0.8
2,661,037	+				-0.7
2,661,038	-				+2.2
2,661,057	+				+1.0
2,661,112	+		IAI47_12655	0.12	-1.5
2,661,112	+		IAI47_12655	0.12	+1.3
2,661,112	+		IAI47_12655	0.12	+2.0
2,661,145	+		IAI47_12655	0.14	+1.9
2,661,145	+		IAI47_12655	0.14	-1.9
2,661,146	-		IAI47_12655	0.14	+0.2
2,661,146	-		IAI47_12655	0.14	-0.9
2,661,172	+		IAI47_12655	0.15	+4.6
2,661,173	-		IAI47_12655	0.15	-0.2
2,661,239	+		IAI47_12655	0.19	-1.0
2,661,240	-		IAI47_12655	0.19	-0.0
2,661,252	-		IAI47_12655	0.19	+1.2
2,661,252	-		IAI47_12655	0.19	-1.4
2,661,261	+		IAI47_12655	0.20	-1.0
2,661,261	+		IAI47_12655	0.20	+0.0
2,661,261	+		IAI47_12655	0.20	-1.5
2,661,261	+		IAI47_12655	0.20	-0.8
2,661,261	+		IAI47_12655	0.20	+1.0
2,661,261	+		IAI47_12655	0.20	+0.5
2,661,262	-		IAI47_12655	0.20	-2.0
2,661,262	-		IAI47_12655	0.20	+1.3
2,661,262	-		IAI47_12655	0.20	+1.5
2,661,262	-		IAI47_12655	0.20	-0.5