Strain Fitness in Pantoea sp. MT58 around IAI47_09435

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,991,168	+				-0.2
1,991,197	+				+2.1
1,991,198	-				+0.3
1,991,200	-				-1.2
1,991,226	+				+0.9
1,991,226	+				+1.2
1,991,226	+				-1.2
1,991,226	+				+0.8
1,991,227	-				+1.4
1,991,227	-				+1.9
1,991,241	+		IAI47_09430	0.10	+3.5
1,991,241	+		IAI47_09430	0.10	-0.4
1,991,241	+		IAI47_09430	0.10	-1.7
1,991,242	-		IAI47_09430	0.10	-0.5
1,991,242	-		IAI47_09430	0.10	+0.7
1,991,242	-		IAI47_09430	0.10	-0.8
1,991,242	-		IAI47_09430	0.10	-0.7
1,991,242	-		IAI47_09430	0.10	+0.0
1,991,250	-		IAI47_09430	0.11	-1.3
1,991,367	+		IAI47_09430	0.23	+0.5
1,991,368	-		IAI47_09430	0.24	-0.7
1,991,368	-		IAI47_09430	0.24	+1.7
1,991,369	+		IAI47_09430	0.24	+1.8
1,991,369	+		IAI47_09430	0.24	+0.3
1,991,369	+		IAI47_09430	0.24	-0.2
1,991,369	+		IAI47_09430	0.24	-0.6
1,991,370	-		IAI47_09430	0.24	-2.0
1,991,370	-		IAI47_09430	0.24	-0.3
1,991,404	-		IAI47_09430	0.27	+0.8
1,991,404	-		IAI47_09430	0.27	+0.9
1,991,404	-		IAI47_09430	0.27	-0.9
1,991,486	-		IAI47_09430	0.36	-0.8
1,991,516	-		IAI47_09430	0.39	-2.5
1,991,516	-		IAI47_09430	0.39	+1.3
1,991,517	+		IAI47_09430	0.39	-1.1
1,991,518	-		IAI47_09430	0.39	-0.7
1,991,528	-		IAI47_09430	0.40	+0.3
1,991,551	+		IAI47_09430	0.43	-0.7
1,991,551	+		IAI47_09430	0.43	-0.9
1,991,552	-		IAI47_09430	0.43	+0.7
1,991,566	+		IAI47_09430	0.44	-0.1
1,991,566	+		IAI47_09430	0.44	+0.6
1,991,593	+		IAI47_09430	0.47	+1.3
1,991,593	+		IAI47_09430	0.47	-2.7
1,991,671	+		IAI47_09430	0.55	-1.1
1,991,672	-		IAI47_09430	0.56	-0.1
1,991,672	-		IAI47_09430	0.56	-0.7
1,991,740	+		IAI47_09430	0.63	+0.5
1,991,740	+		IAI47_09430	0.63	-0.6
1,991,744	+		IAI47_09430	0.63	-1.3
1,991,745	-		IAI47_09430	0.63	-0.9
1,991,745	-		IAI47_09430	0.63	-1.8
1,991,752	+		IAI47_09430	0.64	-1.6
1,991,752	+		IAI47_09430	0.64	+2.4
1,991,753	-		IAI47_09430	0.64	-0.8
1,991,792	-		IAI47_09430	0.68	+0.6
1,991,822	+		IAI47_09430	0.71	+1.5
1,991,822	+		IAI47_09430	0.71	-1.9
1,991,822	+		IAI47_09430	0.71	+0.4
1,991,822	+		IAI47_09430	0.71	+0.2
1,991,823	-		IAI47_09430	0.71	+3.1
1,991,823	-		IAI47_09430	0.71	+0.1
1,991,823	-		IAI47_09430	0.71	-0.1
1,991,823	-		IAI47_09430	0.71	+0.7
1,991,823	-		IAI47_09430	0.71	+1.4
1,991,823	-		IAI47_09430	0.71	-1.2
1,991,823	-		IAI47_09430	0.71	-2.0
1,991,896	+		IAI47_09430	0.79	-0.8
1,991,896	+		IAI47_09430	0.79	+0.7
1,991,966	-		IAI47_09430	0.86	+0.7
1,991,980	+		IAI47_09430	0.88	+1.0
1,991,981	-		IAI47_09430	0.88	-2.1
1,991,981	-		IAI47_09430	0.88	+0.8
1,991,984	+		IAI47_09430	0.88	+1.3
1,991,984	+		IAI47_09430	0.88	+2.5
1,991,984	+		IAI47_09430	0.88	-1.9
1,991,985	-		IAI47_09430	0.88	-0.7
1,991,985	-		IAI47_09430	0.88	+0.7
1,991,985	-		IAI47_09430	0.88	+1.9
1,992,069	-				-1.2
1,992,096	-				+1.0
1,992,096	-				+0.3
1,992,096	-				+1.0
1,992,151	-		IAI47_09435	0.16	-0.1
1,992,171	+		IAI47_09435	0.22	-1.7
1,992,171	+		IAI47_09435	0.22	-0.7
1,992,172	-		IAI47_09435	0.22	-2.7
1,992,172	-		IAI47_09435	0.22	-2.4
1,992,172	-		IAI47_09435	0.22	-0.1
1,992,172	-		IAI47_09435	0.22	+0.7
1,992,175	-		IAI47_09435	0.23	+0.7
1,992,175	-		IAI47_09435	0.23	-2.1
1,992,182	+		IAI47_09435	0.25	-2.3
1,992,183	-		IAI47_09435	0.25	-0.5
1,992,183	-		IAI47_09435	0.25	-2.7
1,992,183	-		IAI47_09435	0.25	-1.7
1,992,183	-		IAI47_09435	0.25	-0.9
1,992,183	-		IAI47_09435	0.25	+0.9
1,992,206	+		IAI47_09435	0.31	+1.6
1,992,207	-		IAI47_09435	0.32	-1.9
1,992,207	-		IAI47_09435	0.32	-0.5
1,992,207	-		IAI47_09435	0.32	-1.9
1,992,207	-		IAI47_09435	0.32	-0.3
1,992,207	-		IAI47_09435	0.32	-2.0
1,992,211	+		IAI47_09435	0.33	-1.1
1,992,211	+		IAI47_09435	0.33	-2.0
1,992,211	+		IAI47_09435	0.33	-0.3
1,992,211	+		IAI47_09435	0.33	-2.0
1,992,211	+		IAI47_09435	0.33	+1.5
1,992,212	-		IAI47_09435	0.33	-0.2
1,992,212	-		IAI47_09435	0.33	-2.4
1,992,212	-		IAI47_09435	0.33	-2.0
1,992,212	-		IAI47_09435	0.33	-1.7
1,992,212	-		IAI47_09435	0.33	-3.0
1,992,212	-		IAI47_09435	0.33	-3.1
1,992,245	+		IAI47_09435	0.42	-0.1
1,992,245	+		IAI47_09435	0.42	+1.1
1,992,245	+		IAI47_09435	0.42	-1.4
1,992,245	+		IAI47_09435	0.42	-0.9
1,992,246	-		IAI47_09435	0.43	-1.6
1,992,246	-		IAI47_09435	0.43	+0.1
1,992,246	-		IAI47_09435	0.43	-2.9
1,992,246	-		IAI47_09435	0.43	+1.2
1,992,246	-		IAI47_09435	0.43	-0.9
1,992,249	+		IAI47_09435	0.43	+0.2
1,992,249	+		IAI47_09435	0.43	-1.1
1,992,249	+		IAI47_09435	0.43	-0.0
1,992,249	+		IAI47_09435	0.43	+0.8
1,992,249	+		IAI47_09435	0.43	-0.8
1,992,249	+		IAI47_09435	0.43	-2.3
1,992,249	+		IAI47_09435	0.43	+0.4
1,992,250	-		IAI47_09435	0.44	-1.4
1,992,250	-		IAI47_09435	0.44	-3.0
1,992,254	+		IAI47_09435	0.45	-1.5
1,992,255	-		IAI47_09435	0.45	-2.3
1,992,328	-		IAI47_09435	0.66	-2.6
1,992,358	+		IAI47_09435	0.74	+1.4
1,992,359	-		IAI47_09435	0.74	+1.9
1,992,359	-		IAI47_09435	0.74	-1.7
1,992,359	-		IAI47_09435	0.74	-0.8
1,992,405	+		IAI47_09435	0.87	+0.7
1,992,406	-		IAI47_09435	0.87	-1.2
1,992,450	+				+1.1
1,992,453	+				-1.6
1,992,453	+				+0.5
1,992,453	+				+1.4
1,992,455	+				-0.8
1,992,482	+				-0.2
1,992,500	+				+0.8
1,992,501	-				+2.2
1,992,581	+				+2.4
1,992,589	+				-0.9
1,992,589	+				-0.7
1,992,590	-				+0.4
1,992,590	-				-0.2
1,992,590	-				+0.9
1,992,622	+				+2.5
1,992,637	+				+1.1
1,992,638	-				-0.4
1,992,638	-				+0.5
1,992,642	+				+1.9
1,992,642	+				-0.7
1,992,642	+				-2.1
1,992,642	+				-0.9
1,992,643	-				-1.0
1,992,645	+				+0.6
1,992,645	+				+0.4
1,992,645	+				+2.2
1,992,645	+				-0.7
1,992,645	+				-3.0
1,992,645	+				+0.4
1,992,646	-				+0.3
1,992,646	-				-1.1
1,992,653	+				-0.3
1,992,653	+				+0.6
1,992,667	+				+0.0
1,992,762	+				+0.5
1,992,778	+				-1.8
1,992,797	+				+0.0
1,992,797	+				-2.1
1,992,797	+				+2.1
1,992,797	+				-0.3
1,992,797	+				-0.7
1,992,797	+				-2.8
1,992,797	+				-0.3
1,992,798	-				-2.3
1,992,798	-				+1.3
1,992,859	+		IAI47_09440	0.11	+0.5
1,992,860	-		IAI47_09440	0.11	-0.1
1,992,870	+		IAI47_09440	0.12	+0.5
1,992,871	-		IAI47_09440	0.12	-0.1
1,992,888	+		IAI47_09440	0.13	-1.9
1,992,893	+		IAI47_09440	0.14	-0.9
1,992,893	+		IAI47_09440	0.14	-0.3
1,992,893	+		IAI47_09440	0.14	-0.6
1,992,893	+		IAI47_09440	0.14	-2.9
1,992,893	+		IAI47_09440	0.14	+1.0
1,992,893	+		IAI47_09440	0.14	-2.0
1,992,893	+		IAI47_09440	0.14	+0.2
1,992,893	+		IAI47_09440	0.14	+0.4
1,992,893	+		IAI47_09440	0.14	-0.8
1,992,893	+		IAI47_09440	0.14	-0.1
1,992,893	+		IAI47_09440	0.14	+0.3
1,992,893	+		IAI47_09440	0.14	+1.0
1,992,893	+		IAI47_09440	0.14	-1.2
1,992,893	+		IAI47_09440	0.14	-1.1
1,992,893	+		IAI47_09440	0.14	-1.9
1,992,893	+		IAI47_09440	0.14	-0.3
1,992,894	-		IAI47_09440	0.14	+3.8
1,992,894	-		IAI47_09440	0.14	-1.9
1,992,894	-		IAI47_09440	0.14	+2.5
1,992,894	-		IAI47_09440	0.14	-1.9
1,992,894	-		IAI47_09440	0.14	+2.7
1,992,894	-		IAI47_09440	0.14	+0.9
1,992,894	-		IAI47_09440	0.14	+0.5
1,992,894	-		IAI47_09440	0.14	-0.5
1,992,894	-		IAI47_09440	0.14	-0.6
1,992,894	-		IAI47_09440	0.14	-0.5
1,992,933	+		IAI47_09440	0.16	-0.6
1,992,933	+		IAI47_09440	0.16	-1.6
1,992,933	+		IAI47_09440	0.16	+0.1
1,993,066	+		IAI47_09440	0.25	-2.2
1,993,075	+		IAI47_09440	0.25	-1.7
1,993,075	+		IAI47_09440	0.25	-1.9
1,993,076	-		IAI47_09440	0.25	-2.4
1,993,168	+		IAI47_09440	0.31	-0.6
1,993,168	+		IAI47_09440	0.31	-0.3
1,993,168	+		IAI47_09440	0.31	-1.2
1,993,168	+		IAI47_09440	0.31	-1.5
1,993,168	+		IAI47_09440	0.31	+0.1
1,993,172	+		IAI47_09440	0.31	-0.4
1,993,173	-		IAI47_09440	0.31	-1.9
1,993,257	+		IAI47_09440	0.37	+0.8
1,993,257	+		IAI47_09440	0.37	+0.7
1,993,297	+		IAI47_09440	0.39	-1.7
1,993,297	+		IAI47_09440	0.39	-1.4
1,993,297	+		IAI47_09440	0.39	-0.0
1,993,297	+		IAI47_09440	0.39	-2.4
1,993,297	+		IAI47_09440	0.39	+1.6
1,993,298	-		IAI47_09440	0.39	-1.7
1,993,298	-		IAI47_09440	0.39	-1.0
1,993,405	+		IAI47_09440	0.46	+0.8
1,993,405	+		IAI47_09440	0.46	-1.7
1,993,405	+		IAI47_09440	0.46	+1.2
1,993,406	-		IAI47_09440	0.46	-0.5