Strain Fitness in Pantoea sp. MT58 around IAI47_08685

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,834,540	-		IAI47_08680	0.62	-1.1
1,834,664	+		IAI47_08680	0.71	-1.0
1,834,664	+		IAI47_08680	0.71	-0.9
1,834,686	-		IAI47_08680	0.72	+0.9
1,834,762	+		IAI47_08680	0.78	+0.1
1,834,762	+		IAI47_08680	0.78	-2.4
1,834,762	+		IAI47_08680	0.78	-0.6
1,834,762	+		IAI47_08680	0.78	-0.4
1,834,763	-		IAI47_08680	0.78	+1.6
1,834,763	-		IAI47_08680	0.78	-1.2
1,834,908	+		IAI47_08680	0.88	-0.7
1,834,909	-		IAI47_08680	0.88	+1.0
1,834,932	-		IAI47_08680	0.89	-1.5
1,834,932	-		IAI47_08680	0.89	-1.5
1,834,957	+				+1.3
1,834,958	-				+0.4
1,834,958	-				+3.1
1,834,964	+				+0.3
1,834,965	-				+1.5
1,834,965	-				-0.0
1,835,067	-				+0.5
1,835,067	-				+0.5
1,835,085	+				+1.6
1,835,085	+				-0.0
1,835,289	+				-1.1
1,835,290	-				-2.3
1,835,290	-				-0.0
1,835,297	+				-2.4
1,835,297	+				+1.1
1,835,297	+				-0.6
1,835,297	+				+1.2
1,835,297	+				+1.7
1,835,298	-				+2.3
1,835,298	-				-1.7
1,835,298	-				+0.4
1,835,298	-				+1.6
1,835,298	-				+1.5
1,835,298	-				-1.1
1,835,298	-				+1.4
1,835,299	+				+0.3
1,835,299	+				-0.7
1,835,299	+				+1.6
1,835,299	+				+1.1
1,835,300	-				-0.3
1,835,313	+				+1.6
1,835,314	-				-1.7
1,835,388	+				-2.2
1,835,388	+				-1.9
1,835,555	+				-2.0
1,835,583	+				-1.2
1,835,583	+				+0.1
1,835,583	+				+1.9
1,835,584	-				-0.6
1,835,584	-				-0.9
1,835,584	-				-1.1
1,835,584	-				+2.2
1,835,584	-				-0.9
1,835,584	-				-0.2
1,835,586	+				-0.1
1,835,586	+				-0.6
1,835,586	+				-0.0
1,835,586	+				+0.4
1,835,587	-				-2.0
1,835,587	-				-0.9
1,835,603	+				-0.3
1,835,604	-				-1.8
1,835,650	-		IAI47_08685	0.11	-1.3
1,835,650	-		IAI47_08685	0.11	+2.9
1,835,744	+		IAI47_08685	0.15	-1.1
1,835,744	+		IAI47_08685	0.15	-1.6
1,835,744	+		IAI47_08685	0.15	+1.0
1,835,745	-		IAI47_08685	0.15	-1.3
1,835,745	-		IAI47_08685	0.15	-0.1
1,835,745	-		IAI47_08685	0.15	+1.4
1,835,745	-		IAI47_08685	0.15	-0.1
1,835,745	-		IAI47_08685	0.15	+1.3
1,835,745	-		IAI47_08685	0.15	-0.0
1,835,745	-		IAI47_08685	0.15	+0.4
1,835,765	+		IAI47_08685	0.16	+0.3
1,835,843	+		IAI47_08685	0.18	-1.7
1,835,843	+		IAI47_08685	0.18	+1.0
1,835,843	+		IAI47_08685	0.18	+2.3
1,835,844	-		IAI47_08685	0.19	-1.5
1,835,844	-		IAI47_08685	0.19	-0.7
1,835,844	-		IAI47_08685	0.19	-2.0
1,835,844	-		IAI47_08685	0.19	+1.3
1,835,942	+		IAI47_08685	0.22	+0.3
1,835,942	+		IAI47_08685	0.22	-1.6
1,835,942	+		IAI47_08685	0.22	-1.0
1,835,942	+		IAI47_08685	0.22	-0.1
1,835,943	-		IAI47_08685	0.22	-0.4
1,835,951	+		IAI47_08685	0.23	-1.3
1,835,952	-		IAI47_08685	0.23	-1.1
1,835,968	+		IAI47_08685	0.23	+1.3
1,835,983	-		IAI47_08685	0.24	-2.3
1,836,022	-		IAI47_08685	0.25	+1.3
1,836,045	+		IAI47_08685	0.26	+0.8
1,836,060	+		IAI47_08685	0.27	-1.2
1,836,060	+		IAI47_08685	0.27	-0.2
1,836,061	-		IAI47_08685	0.27	+0.1
1,836,072	-		IAI47_08685	0.27	-2.4
1,836,072	-		IAI47_08685	0.27	-1.5
1,836,072	-		IAI47_08685	0.27	-1.2
1,836,072	-		IAI47_08685	0.27	-2.5
1,836,072	-		IAI47_08685	0.27	+0.3
1,836,085	-		IAI47_08685	0.28	-0.4
1,836,085	-		IAI47_08685	0.28	+0.6
1,836,085	-		IAI47_08685	0.28	+0.4
1,836,125	+		IAI47_08685	0.29	-1.2
1,836,125	+		IAI47_08685	0.29	+1.8
1,836,126	-		IAI47_08685	0.29	+0.7
1,836,168	+		IAI47_08685	0.31	+1.5
1,836,168	+		IAI47_08685	0.31	+0.5
1,836,168	+		IAI47_08685	0.31	+0.8
1,836,169	-		IAI47_08685	0.31	-0.0
1,836,169	-		IAI47_08685	0.31	-0.6
1,836,240	+		IAI47_08685	0.34	+2.2
1,836,292	+		IAI47_08685	0.36	+0.3
1,836,292	+		IAI47_08685	0.36	-0.0
1,836,292	+		IAI47_08685	0.36	-0.6
1,836,292	+		IAI47_08685	0.36	-0.7
1,836,292	+		IAI47_08685	0.36	-1.0
1,836,292	+		IAI47_08685	0.36	+2.9
1,836,292	+		IAI47_08685	0.36	-3.0
1,836,293	-		IAI47_08685	0.36	-1.3
1,836,293	-		IAI47_08685	0.36	-0.8
1,836,303	-		IAI47_08685	0.36	-1.0
1,836,327	+		IAI47_08685	0.37	+1.4
1,836,377	+		IAI47_08685	0.39	+0.7
1,836,377	+		IAI47_08685	0.39	-0.1
1,836,448	-		IAI47_08685	0.41	+1.5
1,836,448	-		IAI47_08685	0.41	+2.7
1,836,448	-		IAI47_08685	0.41	+0.8
1,836,583	+		IAI47_08685	0.47	-1.9
1,836,584	-		IAI47_08685	0.47	+2.4
1,836,637	-		IAI47_08685	0.49	+0.8
1,836,724	+		IAI47_08685	0.52	-2.0
1,836,724	+		IAI47_08685	0.52	+2.6
1,836,724	+		IAI47_08685	0.52	+0.7
1,836,725	-		IAI47_08685	0.52	-1.3
1,836,725	-		IAI47_08685	0.52	+0.6
1,836,777	+		IAI47_08685	0.54	-1.4
1,836,782	+		IAI47_08685	0.54	+1.3
1,836,782	+		IAI47_08685	0.54	-0.4
1,836,782	+		IAI47_08685	0.54	-2.1
1,836,782	+		IAI47_08685	0.54	+2.0
1,836,782	+		IAI47_08685	0.54	-1.1
1,836,782	+		IAI47_08685	0.54	+0.6
1,836,782	+		IAI47_08685	0.54	-1.1
1,836,783	-		IAI47_08685	0.54	+1.3
1,836,783	-		IAI47_08685	0.54	+3.4
1,836,783	-		IAI47_08685	0.54	-0.6
1,836,783	-		IAI47_08685	0.54	+0.5
1,836,783	-		IAI47_08685	0.54	-2.4
1,836,783	-		IAI47_08685	0.54	-0.2
1,836,819	+		IAI47_08685	0.56	+1.1
1,836,819	+		IAI47_08685	0.56	-1.3
1,836,819	+		IAI47_08685	0.56	+2.2
1,837,085	+		IAI47_08685	0.66	+0.3
1,837,085	+		IAI47_08685	0.66	-1.9
1,837,085	+		IAI47_08685	0.66	-1.3
1,837,085	+		IAI47_08685	0.66	-1.1
1,837,086	-		IAI47_08685	0.66	-1.7
1,837,086	-		IAI47_08685	0.66	-1.3
1,837,086	-		IAI47_08685	0.66	-1.5
1,837,086	-		IAI47_08685	0.66	+0.3
1,837,086	-		IAI47_08685	0.66	-0.0
1,837,086	-		IAI47_08685	0.66	-1.2
1,837,086	-		IAI47_08685	0.66	+0.6
1,837,178	+		IAI47_08685	0.69	-0.6
1,837,281	+		IAI47_08685	0.73	+1.6
1,837,356	+		IAI47_08685	0.76	-0.4
1,837,357	-		IAI47_08685	0.76	+1.6
1,837,357	-		IAI47_08685	0.76	-0.0
1,837,375	+		IAI47_08685	0.77	+1.1
1,837,375	+		IAI47_08685	0.77	-1.1
1,837,401	+		IAI47_08685	0.78	-1.7
1,837,402	-		IAI47_08685	0.78	+2.0
1,837,402	-		IAI47_08685	0.78	-1.2
1,837,404	+		IAI47_08685	0.78	-2.1
1,837,404	+		IAI47_08685	0.78	-0.6
1,837,404	+		IAI47_08685	0.78	+2.0
1,837,405	-		IAI47_08685	0.78	-0.8
1,837,405	-		IAI47_08685	0.78	-1.9
1,837,405	-		IAI47_08685	0.78	+0.1
1,837,405	-		IAI47_08685	0.78	-0.9
1,837,415	+		IAI47_08685	0.78	-1.7
1,837,415	+		IAI47_08685	0.78	-1.6
1,837,416	-		IAI47_08685	0.78	-0.5
1,837,416	-		IAI47_08685	0.78	-1.8
1,837,416	-		IAI47_08685	0.78	-0.7
1,837,421	+		IAI47_08685	0.78	+1.5
1,837,421	+		IAI47_08685	0.78	+1.1
1,837,421	+		IAI47_08685	0.78	-2.0
1,837,421	+		IAI47_08685	0.78	+1.0
1,837,422	-		IAI47_08685	0.78	-0.6
1,837,422	-		IAI47_08685	0.78	+0.3
1,837,449	-		IAI47_08685	0.79	-1.1
1,837,451	+		IAI47_08685	0.80	+0.3
1,837,451	+		IAI47_08685	0.80	+2.7
1,837,452	-		IAI47_08685	0.80	-0.4
1,837,529	+		IAI47_08685	0.82	-0.7
1,837,529	+		IAI47_08685	0.82	+1.8
1,837,529	+		IAI47_08685	0.82	-2.1
1,837,530	-		IAI47_08685	0.83	+0.8
1,837,533	+		IAI47_08685	0.83	+1.2
1,837,534	-		IAI47_08685	0.83	-2.2
1,837,554	+		IAI47_08685	0.83	+1.6
1,837,573	-		IAI47_08685	0.84	-0.6
1,837,573	-		IAI47_08685	0.84	+0.1
1,837,598	+		IAI47_08685	0.85	+2.4
1,837,598	+		IAI47_08685	0.85	+0.3
1,837,598	+		IAI47_08685	0.85	-1.7
1,837,598	+		IAI47_08685	0.85	-2.9
1,837,598	+		IAI47_08685	0.85	-1.6
1,837,598	+		IAI47_08685	0.85	-0.2
1,837,598	+		IAI47_08685	0.85	-2.0
1,837,599	-		IAI47_08685	0.85	-1.1
1,837,599	-		IAI47_08685	0.85	+1.8
1,837,599	-		IAI47_08685	0.85	-0.9
1,837,599	-		IAI47_08685	0.85	-0.2
1,837,599	-		IAI47_08685	0.85	-0.0
1,837,599	-		IAI47_08685	0.85	-3.4
1,837,599	-		IAI47_08685	0.85	+0.6
1,837,599	-		IAI47_08685	0.85	-1.3
1,837,599	-		IAI47_08685	0.85	-1.5
1,837,599	-		IAI47_08685	0.85	-1.8
1,837,599	-		IAI47_08685	0.85	+3.0
1,837,599	-		IAI47_08685	0.85	-1.1
1,837,599	-		IAI47_08685	0.85	+0.8
1,837,599	-		IAI47_08685	0.85	+1.3
1,837,602	+		IAI47_08685	0.85	+1.2
1,837,603	-		IAI47_08685	0.85	-0.3
1,837,650	+		IAI47_08685	0.87	+0.2
1,837,650	+		IAI47_08685	0.87	-0.1
1,837,719	+		IAI47_08685	0.90	+0.3
1,837,720	-		IAI47_08685	0.90	-0.4
1,837,720	-		IAI47_08685	0.90	-1.9
1,837,752	+				+0.6
1,837,815	+				+0.2
1,837,816	-				+1.0
1,837,865	+				-2.2
1,837,865	+				-1.1
1,837,865	+				-0.2
1,837,866	-				-3.3
1,837,866	-				+0.5
1,837,866	-				-0.3
1,837,866	-				+3.2
1,837,866	-				-1.4
1,837,870	-				-1.0
1,837,870	-				+2.2
1,837,870	-				-1.1
1,837,870	-				+0.7
1,837,908	+				+0.3
1,837,908	+				-0.0
1,837,909	-				-0.2
1,837,936	-				-1.8
1,837,941	+				-2.6
1,837,941	+				+3.0
1,837,941	+				-0.9
1,837,942	-				-0.2
1,837,942	-				+2.0
1,837,942	-				-1.1
1,837,968	+				-0.1
1,837,968	+				-2.3
1,838,032	+				-0.7
1,838,032	+				-1.9
1,838,032	+				-1.7
1,838,032	+				-0.0
1,838,032	+				-1.7
1,838,032	+				-2.2
1,838,032	+				+0.1
1,838,032	+				-2.1
1,838,032	+				-0.9
1,838,032	+				-0.5
1,838,032	+				-0.7
1,838,032	+				-1.3
1,838,032	+				-0.4
1,838,032	+				-2.2
1,838,032	+				-2.5
1,838,032	+				-1.3
1,838,033	-				-0.3
1,838,033	-				-0.4
1,838,033	-				+3.5
1,838,033	-				+1.6
1,838,033	-				+1.3
1,838,033	-				-1.0
1,838,033	-				-0.0
1,838,033	-				-0.9
1,838,033	-				+1.3
1,838,033	-				-1.1
1,838,033	-				+4.1
1,838,033	-				+3.3
1,838,084	-		IAI47_08690	0.10	+0.9
1,838,180	+		IAI47_08690	0.18	-1.1
1,838,180	+		IAI47_08690	0.18	-1.8
1,838,181	-		IAI47_08690	0.18	-0.2
1,838,181	-		IAI47_08690	0.18	+1.2
1,838,181	-		IAI47_08690	0.18	+0.7
1,838,181	-		IAI47_08690	0.18	-0.0
1,838,228	-		IAI47_08690	0.22	-1.2
1,838,263	+		IAI47_08690	0.24	-0.4
1,838,274	-		IAI47_08690	0.25	-0.6
1,838,274	-		IAI47_08690	0.25	-1.6
1,838,278	+		IAI47_08690	0.26	-1.1
1,838,279	-		IAI47_08690	0.26	-1.1
1,838,279	-		IAI47_08690	0.26	-1.4
1,838,376	+		IAI47_08690	0.34	-0.3
1,838,377	-		IAI47_08690	0.34	+0.0
1,838,377	-		IAI47_08690	0.34	+0.7
1,838,486	-		IAI47_08690	0.42	-0.7
1,838,486	-		IAI47_08690	0.42	+0.8
1,838,519	+		IAI47_08690	0.45	+0.7
1,838,519	+		IAI47_08690	0.45	-1.6
1,838,569	+		IAI47_08690	0.49	-3.0
1,838,614	+		IAI47_08690	0.53	-1.2
1,838,614	+		IAI47_08690	0.53	+1.6
1,838,614	+		IAI47_08690	0.53	+2.8
1,838,615	-		IAI47_08690	0.53	+1.0
1,838,615	-		IAI47_08690	0.53	+1.1
1,838,661	+		IAI47_08690	0.56	-0.9
1,838,661	+		IAI47_08690	0.56	-1.0
1,838,661	+		IAI47_08690	0.56	-1.7
1,838,661	+		IAI47_08690	0.56	-1.3
1,838,662	-		IAI47_08690	0.57	+0.7
1,838,662	-		IAI47_08690	0.57	+3.0
1,838,662	-		IAI47_08690	0.57	+1.0
1,838,662	-		IAI47_08690	0.57	+0.5
1,838,662	-		IAI47_08690	0.57	+1.1
1,838,662	-		IAI47_08690	0.57	+0.9
1,838,662	-		IAI47_08690	0.57	-0.0
1,838,697	+		IAI47_08690	0.59	-2.9
1,838,697	+		IAI47_08690	0.59	+0.5
1,838,697	+		IAI47_08690	0.59	+0.3
1,838,710	+		IAI47_08690	0.60	-1.8
1,838,710	+		IAI47_08690	0.60	+2.7
1,838,710	+		IAI47_08690	0.60	-1.8
1,838,739	+		IAI47_08690	0.63	-1.1
1,838,739	+		IAI47_08690	0.63	+0.7
1,838,739	+		IAI47_08690	0.63	-1.3
1,838,739	+		IAI47_08690	0.63	+0.3
1,838,739	+		IAI47_08690	0.63	-1.3
1,838,739	+		IAI47_08690	0.63	+1.0
1,838,739	+		IAI47_08690	0.63	-1.6
1,838,739	+		IAI47_08690	0.63	-3.1
1,838,740	-		IAI47_08690	0.63	+0.3
1,838,740	-		IAI47_08690	0.63	-1.1
1,838,740	-		IAI47_08690	0.63	-0.7
1,838,740	-		IAI47_08690	0.63	-2.0
1,838,740	-		IAI47_08690	0.63	+2.6
1,838,740	-		IAI47_08690	0.63	-1.5
1,838,743	+		IAI47_08690	0.63	-0.2
1,838,743	+		IAI47_08690	0.63	-1.7
1,838,803	+		IAI47_08690	0.68	-2.1
1,838,804	-		IAI47_08690	0.68	-1.0
1,838,804	-		IAI47_08690	0.68	+1.2
1,838,829	+		IAI47_08690	0.70	-1.2
1,838,830	-		IAI47_08690	0.70	+2.1
1,838,830	-		IAI47_08690	0.70	+2.0
1,838,897	+		IAI47_08690	0.75	+0.4
1,838,897	+		IAI47_08690	0.75	-1.3
1,838,898	-		IAI47_08690	0.76	+2.6
1,838,898	-		IAI47_08690	0.76	-2.3
1,838,898	-		IAI47_08690	0.76	-0.7
1,838,898	-		IAI47_08690	0.76	+0.2