Strain Fitness in Pantoea sp. MT58 around IAI47_08280

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,751,909	+				+2.8
1,751,910	-				-2.1
1,751,918	+				-0.9
1,751,918	+				+1.5
1,751,918	+				+1.3
1,751,918	+				+1.4
1,751,918	+				+1.6
1,751,919	-				-0.3
1,751,919	-				-1.1
1,751,919	-				-0.8
1,751,925	+				+1.4
1,751,925	+				-0.5
1,751,925	+				-0.9
1,751,925	+				-2.1
1,751,926	-				-2.8
1,751,926	-				+1.7
1,751,936	+				-3.0
1,751,952	+				+0.3
1,751,953	-				+0.2
1,752,040	+				+1.0
1,752,040	+				-0.3
1,752,040	+				-2.4
1,752,041	-				+3.2
1,752,045	-				-1.0
1,752,045	-				+1.3
1,752,045	-				-1.7
1,752,045	-				+1.4
1,752,053	+				-0.3
1,752,087	-				+0.3
1,752,087	-				+0.2
1,752,097	+				-1.1
1,752,098	-				-1.0
1,752,098	-				-1.5
1,752,098	-				-2.5
1,752,098	-				+0.1
1,752,098	-				-0.2
1,752,100	-				-1.3
1,752,128	+				-0.9
1,752,129	-				+1.1
1,752,133	-				-1.1
1,752,143	+				+0.0
1,752,143	+				+2.0
1,752,143	+				-2.1
1,752,144	-				+0.9
1,752,152	+				-1.6
1,752,219	+				+0.1
1,752,219	+				-0.1
1,752,242	+				-1.0
1,752,243	-				+1.3
1,752,277	-				-0.7
1,752,343	+				-0.4
1,752,344	-				+2.0
1,752,344	-				+1.9
1,752,344	-				+0.4
1,752,401	-				+0.3
1,752,401	-				-0.7
1,752,419	+				+0.3
1,752,423	-				-1.1
1,752,449	+				-0.3
1,752,449	+				+1.9
1,752,576	+				-1.3
1,752,576	+				-2.4
1,752,576	+				-0.7
1,752,576	+				-2.1
1,752,577	-				-2.6
1,752,577	-				-1.8
1,752,577	-				+0.2
1,752,577	-				-2.2
1,752,594	+				-1.7
1,752,594	+				+0.3
1,752,595	-				-2.9
1,752,596	+				-2.4
1,752,596	+				+2.1
1,752,597	-				-3.4
1,752,597	-				-3.1
1,752,633	+				+0.3
1,752,634	-				-2.2
1,752,634	-				-0.1
1,752,671	-				-1.7
1,752,742	+				-0.7
1,752,742	+				+0.5
1,752,742	+				-1.9
1,752,742	+				-1.3
1,752,743	-				-2.0
1,752,743	-				-3.6
1,752,743	-				-0.7
1,752,743	-				-2.5
1,752,743	-				-1.1
1,752,746	+				-1.9
1,752,746	+				-1.5
1,752,746	+				-0.8
1,752,746	+				-1.3
1,752,746	+				-0.2
1,752,746	+				-0.4
1,752,746	+				+1.2
1,752,747	-				-2.8
1,752,747	-				-2.0
1,752,747	-				-2.1
1,752,747	-				-4.2
1,752,749	-				+0.7
1,752,749	-				-2.6
1,752,819	-				-1.7
1,752,819	-				-2.0
1,752,824	+				+1.3
1,752,869	+				-2.9
1,752,869	+				-1.6
1,752,870	-				-2.0
1,752,879	+				-0.8
1,752,879	+				-1.6
1,752,879	+				-1.0
1,752,880	-				+0.2
1,752,880	-				-0.0
1,752,883	+				+0.2
1,752,901	+		IAI47_08280	0.14	-0.8
1,752,901	+		IAI47_08280	0.14	-2.1
1,752,902	-		IAI47_08280	0.14	-2.1
1,752,902	-		IAI47_08280	0.14	-0.1
1,752,905	+		IAI47_08280	0.15	+0.3
1,752,905	+		IAI47_08280	0.15	+0.0
1,752,905	+		IAI47_08280	0.15	+1.0
1,752,906	-		IAI47_08280	0.15	-3.3
1,752,923	+		IAI47_08280	0.20	-0.9
1,752,923	+		IAI47_08280	0.20	-0.4
1,752,923	+		IAI47_08280	0.20	-1.0
1,752,923	+		IAI47_08280	0.20	+0.8
1,752,923	+		IAI47_08280	0.20	+0.5
1,752,928	-		IAI47_08280	0.21	+0.2
1,752,936	+		IAI47_08280	0.23	-1.8
1,752,989	+		IAI47_08280	0.38	-0.2
1,752,989	+		IAI47_08280	0.38	-1.9
1,752,989	+		IAI47_08280	0.38	-0.2
1,752,989	+		IAI47_08280	0.38	+0.8
1,752,989	+		IAI47_08280	0.38	-1.5
1,752,990	-		IAI47_08280	0.39	-2.4
1,752,998	+		IAI47_08280	0.41	-1.0
1,752,998	+		IAI47_08280	0.41	-1.2
1,752,998	+		IAI47_08280	0.41	-2.3
1,752,998	+		IAI47_08280	0.41	-1.4
1,752,999	-		IAI47_08280	0.41	+0.4
1,753,017	-		IAI47_08280	0.46	-2.0
1,753,059	+		IAI47_08280	0.58	-2.0
1,753,077	+		IAI47_08280	0.63	-3.6
1,753,077	+		IAI47_08280	0.63	-2.1
1,753,077	+		IAI47_08280	0.63	-2.5
1,753,078	-		IAI47_08280	0.64	-2.7
1,753,078	-		IAI47_08280	0.64	-3.0
1,753,078	-		IAI47_08280	0.64	-0.7
1,753,112	+		IAI47_08280	0.73	-1.8
1,753,112	+		IAI47_08280	0.73	+1.8
1,753,112	+		IAI47_08280	0.73	-0.9
1,753,112	+		IAI47_08280	0.73	-2.1
1,753,125	+		IAI47_08280	0.77	-1.9
1,753,140	-		IAI47_08280	0.81	-2.5
1,753,158	+		IAI47_08280	0.86	-0.1
1,753,158	+		IAI47_08280	0.86	+1.8
1,753,158	+		IAI47_08280	0.86	-0.6
1,753,159	-		IAI47_08280	0.86	-2.9
1,753,167	+		IAI47_08280	0.89	-1.0
1,753,167	+		IAI47_08280	0.89	-3.2
1,753,217	+				-1.6
1,753,238	+				+0.7
1,753,279	+		IAI47_08285	0.13	+1.1
1,753,280	-		IAI47_08285	0.13	+0.1
1,753,280	-		IAI47_08285	0.13	-0.5
1,753,288	+		IAI47_08285	0.15	+2.3
1,753,288	+		IAI47_08285	0.15	-1.9
1,753,288	+		IAI47_08285	0.15	-2.1
1,753,288	+		IAI47_08285	0.15	-2.0
1,753,289	-		IAI47_08285	0.15	-1.0
1,753,333	-		IAI47_08285	0.22	-2.1
1,753,335	-		IAI47_08285	0.23	-0.1
1,753,335	-		IAI47_08285	0.23	-2.1
1,753,335	-		IAI47_08285	0.23	+0.5
1,753,342	+		IAI47_08285	0.24	-1.3
1,753,342	+		IAI47_08285	0.24	+1.0
1,753,343	-		IAI47_08285	0.24	-2.5
1,753,433	+		IAI47_08285	0.40	-1.1
1,753,433	+		IAI47_08285	0.40	-1.1
1,753,433	+		IAI47_08285	0.40	-2.2
1,753,434	-		IAI47_08285	0.40	+0.7
1,753,434	-		IAI47_08285	0.40	+0.1
1,753,477	+		IAI47_08285	0.47	-0.6
1,753,477	+		IAI47_08285	0.47	-1.9
1,753,477	+		IAI47_08285	0.47	-0.2
1,753,478	-		IAI47_08285	0.47	-2.1
1,753,478	-		IAI47_08285	0.47	-1.1
1,753,478	-		IAI47_08285	0.47	+1.9
1,753,478	-		IAI47_08285	0.47	-0.4
1,753,490	+		IAI47_08285	0.50	-0.7
1,753,491	-		IAI47_08285	0.50	-0.5
1,753,491	-		IAI47_08285	0.50	-1.0
1,753,506	+		IAI47_08285	0.52	-1.3
1,753,592	+		IAI47_08285	0.67	-1.1
1,753,593	-		IAI47_08285	0.67	+0.2
1,753,613	+		IAI47_08285	0.71	-3.2
1,753,613	+		IAI47_08285	0.71	+0.9
1,753,613	+		IAI47_08285	0.71	-1.8
1,753,613	+		IAI47_08285	0.71	-1.6
1,753,614	-		IAI47_08285	0.71	+0.1
1,753,614	-		IAI47_08285	0.71	-3.3
1,753,634	+		IAI47_08285	0.74	-0.8
1,753,635	-		IAI47_08285	0.75	+1.1
1,753,635	-		IAI47_08285	0.75	-3.7
1,753,635	-		IAI47_08285	0.75	-2.5
1,753,637	+		IAI47_08285	0.75	-2.6
1,753,637	+		IAI47_08285	0.75	-2.6
1,753,637	+		IAI47_08285	0.75	-1.6
1,753,638	-		IAI47_08285	0.75	-2.2
1,753,638	-		IAI47_08285	0.75	-1.5
1,753,638	-		IAI47_08285	0.75	-3.0
1,753,667	+		IAI47_08285	0.80	-3.7
1,753,667	+		IAI47_08285	0.80	-2.6
1,753,713	-		IAI47_08285	0.88	+1.7
1,753,736	+				-0.8
1,753,736	+				+0.3
1,753,736	+				+0.3
1,753,737	-				+0.6
1,753,737	-				-1.1
1,753,766	+				+0.7
1,753,766	+				-1.6
1,753,766	+				+1.7
1,753,817	+				-0.5
1,753,817	+				+2.9
1,753,854	+				-1.2
1,753,854	+				+2.1
1,753,855	-				-1.2
1,753,855	-				-1.7
1,753,876	+				+0.2
1,753,877	-				+3.9
1,753,902	+				-2.1
1,753,902	+				+0.5
1,753,921	+				-2.3
1,753,921	+				+2.8
1,753,921	+				-1.8
1,753,921	+				-0.1
1,753,925	+				-0.3
1,753,925	+				-2.2
1,753,926	-				+1.5
1,753,926	-				-1.2
1,753,927	+				-0.4
1,753,927	+				-0.8
1,753,927	+				-0.7
1,753,928	-				-0.3
1,753,928	-				+0.7
1,753,928	-				-1.1
1,753,928	-				-1.1
1,753,933	-				-0.1
1,753,965	+				-0.3
1,753,965	+				-2.2
1,753,975	+				-2.0
1,753,975	+				-1.6
1,753,975	+				+1.8
1,753,975	+				+1.6
1,753,975	+				-0.9
1,753,998	+				-1.8
1,753,999	-				-1.9
1,754,014	+		IAI47_08290	0.11	-1.0
1,754,015	-		IAI47_08290	0.11	-1.1
1,754,015	-		IAI47_08290	0.11	-1.6
1,754,015	-		IAI47_08290	0.11	-0.2
1,754,018	-		IAI47_08290	0.12	+1.7
1,754,100	-		IAI47_08290	0.21	+2.5
1,754,122	-		IAI47_08290	0.23	-0.1
1,754,127	-		IAI47_08290	0.24	-1.9
1,754,136	+		IAI47_08290	0.25	+0.7
1,754,136	+		IAI47_08290	0.25	+1.3
1,754,137	-		IAI47_08290	0.25	-1.7
1,754,137	-		IAI47_08290	0.25	+1.5
1,754,137	-		IAI47_08290	0.25	-1.9
1,754,146	+		IAI47_08290	0.26	+2.7
1,754,161	-		IAI47_08290	0.28	-0.8