Strain Fitness in Pantoea sp. MT58 around IAI47_08170

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,722,088	+		IAI47_08160	0.83	-2.5
1,722,088	+		IAI47_08160	0.83	-2.6
1,722,088	+		IAI47_08160	0.83	-1.6
1,722,088	+		IAI47_08160	0.83	-1.8
1,722,088	+		IAI47_08160	0.83	-0.3
1,722,088	+		IAI47_08160	0.83	-1.2
1,722,088	+		IAI47_08160	0.83	-3.7
1,722,088	+		IAI47_08160	0.83	-0.8
1,722,089	-		IAI47_08160	0.83	-2.3
1,722,089	-		IAI47_08160	0.83	+0.6
1,722,089	-		IAI47_08160	0.83	-2.7
1,722,089	-		IAI47_08160	0.83	+1.0
1,722,091	+		IAI47_08160	0.83	-1.2
1,722,091	+		IAI47_08160	0.83	+1.2
1,722,091	+		IAI47_08160	0.83	+0.3
1,722,091	+		IAI47_08160	0.83	+3.0
1,722,092	-		IAI47_08160	0.83	-0.6
1,722,092	-		IAI47_08160	0.83	-1.4
1,722,092	-		IAI47_08160	0.83	-2.9
1,722,092	-		IAI47_08160	0.83	-2.4
1,722,212	-				-0.7
1,722,217	+				-0.4
1,722,217	+				-0.1
1,722,217	+				+1.2
1,722,218	-				-0.0
1,722,218	-				+0.1
1,722,218	-				+1.8
1,722,243	+				+1.9
1,722,262	+				-0.4
1,722,292	+				-1.8
1,722,292	+				+0.1
1,722,293	-				-1.7
1,722,300	+				+0.3
1,722,305	+				-1.0
1,722,306	-				+1.0
1,722,306	-				-0.2
1,722,306	-				-1.2
1,722,312	+				-1.4
1,722,312	+				+0.9
1,722,313	+				-0.2
1,722,313	-				+1.3
1,722,313	-				+0.1
1,722,313	-				-0.3
1,722,313	-				+0.4
1,722,314	+				-0.0
1,722,314	+				-1.3
1,722,315	-		IAI47_08165	0.10	-1.3
1,722,315	-		IAI47_08165	0.10	-0.3
1,722,315	-		IAI47_08165	0.10	-1.4
1,722,315	-		IAI47_08165	0.10	+0.3
1,722,315	-		IAI47_08165	0.10	+2.4
1,722,352	+		IAI47_08165	0.17	+2.1
1,722,352	+		IAI47_08165	0.17	+1.2
1,722,352	+		IAI47_08165	0.17	-1.2
1,722,353	-		IAI47_08165	0.18	+1.4
1,722,353	-		IAI47_08165	0.18	-0.9
1,722,353	-		IAI47_08165	0.18	+1.6
1,722,355	+		IAI47_08165	0.18	-2.1
1,722,355	+		IAI47_08165	0.18	+0.9
1,722,356	-		IAI47_08165	0.18	+0.1
1,722,356	-		IAI47_08165	0.18	+0.3
1,722,356	-				+0.1
1,722,395	+		IAI47_08165	0.26	-0.8
1,722,395	+		IAI47_08165	0.26	+2.1
1,722,396	-		IAI47_08165	0.26	+2.0
1,722,396	-		IAI47_08165	0.26	+1.7
1,722,485	+		IAI47_08165	0.44	+3.9
1,722,513	-		IAI47_08165	0.49	+0.3
1,722,513	-		IAI47_08165	0.49	+0.2
1,722,513	-		IAI47_08165	0.49	-2.4
1,722,516	+		IAI47_08165	0.50	+1.1
1,722,516	+		IAI47_08165	0.50	-2.0
1,722,516	+		IAI47_08165	0.50	+0.3
1,722,516	+		IAI47_08165	0.50	+1.3
1,722,516	+		IAI47_08165	0.50	+3.3
1,722,543	+		IAI47_08165	0.55	+0.1
1,722,543	+		IAI47_08165	0.55	+0.3
1,722,544	-		IAI47_08165	0.56	+1.3
1,722,544	-		IAI47_08165	0.56	+0.5
1,722,544	-		IAI47_08165	0.56	-1.6
1,722,588	+		IAI47_08165	0.64	+0.7
1,722,589	-		IAI47_08165	0.64	-0.1
1,722,589	-		IAI47_08165	0.64	-1.8
1,722,589	-		IAI47_08165	0.64	-1.2
1,722,589	-		IAI47_08165	0.64	-1.3
1,722,589	-		IAI47_08165	0.64	-0.7
1,722,653	+		IAI47_08165	0.77	+2.3
1,722,662	+		IAI47_08165	0.79	+0.1
1,722,662	+		IAI47_08165	0.79	+1.3
1,722,663	-		IAI47_08165	0.79	-2.0
1,722,663	-		IAI47_08165	0.79	-0.3
1,722,705	-		IAI47_08165	0.88	+1.1
1,722,705	-		IAI47_08165	0.88	+1.5
1,722,707	+		IAI47_08165	0.88	-2.1
1,722,707	+		IAI47_08165	0.88	-1.5
1,722,708	-		IAI47_08165	0.88	+0.1
1,722,714	+		IAI47_08165	0.89	+1.1
1,722,714	+		IAI47_08165	0.89	-0.1
1,722,715	-		IAI47_08165	0.89	+0.7
1,722,715	-		IAI47_08165	0.89	+0.5
1,722,735	+				+0.6
1,722,735	+				-1.4
1,722,735	+				-0.9
1,722,736	-				+1.4
1,722,736	-				-1.3
1,722,736	-				-1.6
1,722,749	-				+0.3
1,722,749	-				+0.8
1,722,749	-				+1.0
1,722,749	-				+0.8
1,722,749	-				-1.2
1,722,765	+				-0.4
1,722,765	+				+1.0
1,722,766	-				-0.1
1,722,766	-				+1.0
1,722,951	+				-0.9
1,722,952	-				-1.0
1,722,952	-				-2.9
1,722,957	+				+0.8
1,722,958	-				+1.9
1,723,001	+				+0.8
1,723,001	+				+1.4
1,723,001	+				-0.7
1,723,002	-				+0.9
1,723,047	-				+0.3
1,723,072	+				+1.1
1,723,193	+		IAI47_08170	0.21	-1.7
1,723,193	+		IAI47_08170	0.21	+0.9
1,723,193	+		IAI47_08170	0.21	-0.5
1,723,296	+		IAI47_08170	0.32	+2.0
1,723,313	-		IAI47_08170	0.33	-1.4
1,723,338	-		IAI47_08170	0.36	-1.9
1,723,444	+		IAI47_08170	0.47	-1.7
1,723,444	+		IAI47_08170	0.47	-0.1
1,723,444	+		IAI47_08170	0.47	-0.9
1,723,444	+		IAI47_08170	0.47	+1.6
1,723,445	-		IAI47_08170	0.47	+1.2
1,723,445	-		IAI47_08170	0.47	+2.0
1,723,445	-		IAI47_08170	0.47	+1.3
1,723,445	-		IAI47_08170	0.47	-0.7
1,723,445	-		IAI47_08170	0.47	-1.7
1,723,445	-		IAI47_08170	0.47	+0.7
1,723,484	+		IAI47_08170	0.51	-1.0
1,723,485	-		IAI47_08170	0.51	-0.5
1,723,485	-		IAI47_08170	0.51	-1.2
1,723,485	-		IAI47_08170	0.51	-0.1
1,723,485	-		IAI47_08170	0.51	+0.7
1,723,485	-		IAI47_08170	0.51	+3.1
1,723,489	+		IAI47_08170	0.51	+0.6
1,723,489	+		IAI47_08170	0.51	-0.1
1,723,489	+		IAI47_08170	0.51	+1.1
1,723,489	+		IAI47_08170	0.51	+0.1
1,723,489	+		IAI47_08170	0.51	-1.1
1,723,489	+		IAI47_08170	0.51	-3.0
1,723,489	+		IAI47_08170	0.51	-0.0
1,723,490	-		IAI47_08170	0.51	+0.7
1,723,490	-		IAI47_08170	0.51	-1.4
1,723,490	-		IAI47_08170	0.51	+0.5
1,723,490	-		IAI47_08170	0.51	+2.5
1,723,490	-		IAI47_08170	0.51	-1.0
1,723,490	-		IAI47_08170	0.51	-0.3
1,723,490	-		IAI47_08170	0.51	+1.4
1,723,490	-		IAI47_08170	0.51	+0.4
1,723,595	+		IAI47_08170	0.62	+2.6
1,723,596	-		IAI47_08170	0.62	+3.1
1,723,596	-		IAI47_08170	0.62	-0.1
1,723,715	+		IAI47_08170	0.74	+0.6
1,723,715	+		IAI47_08170	0.74	+0.3
1,723,716	-		IAI47_08170	0.74	+2.7
1,723,716	-		IAI47_08170	0.74	-1.4
1,723,716	-		IAI47_08170	0.74	+2.7
1,723,723	-		IAI47_08170	0.75	+1.1
1,723,723	-		IAI47_08170	0.75	-1.8
1,723,731	+		IAI47_08170	0.76	+2.5
1,723,731	+		IAI47_08170	0.76	+0.7
1,723,731	+		IAI47_08170	0.76	-0.9
1,723,731	+		IAI47_08170	0.76	+0.9
1,723,731	+		IAI47_08170	0.76	+0.5
1,723,732	-		IAI47_08170	0.76	+1.1
1,723,732	-		IAI47_08170	0.76	-1.7
1,723,732	-		IAI47_08170	0.76	+1.7
1,723,732	-		IAI47_08170	0.76	+2.3
1,723,732	-		IAI47_08170	0.76	-0.1
1,723,732	-		IAI47_08170	0.76	+1.1
1,723,732	-		IAI47_08170	0.76	-1.6
1,723,789	-		IAI47_08170	0.81	-0.4
1,723,789	-		IAI47_08170	0.81	+2.9
1,723,789	-		IAI47_08170	0.81	-1.7
1,723,789	-		IAI47_08170	0.81	+2.4
1,723,844	-		IAI47_08170	0.87	-0.9
1,723,846	-		IAI47_08170	0.87	-0.1
1,723,920	+				+2.7
1,723,921	-				+2.4
1,723,921	-				+0.8
1,723,921	-				+0.1
1,723,927	-				+0.2
1,723,946	+				+0.7
1,723,947	-				-1.3
1,723,954	+				-2.8
1,723,954	+				-0.9
1,723,955	-				-0.7
1,723,992	+				-0.9
1,723,992	+				+0.1
1,723,992	+				-2.1
1,723,992	+				-1.7
1,723,993	-				+0.5
1,723,993	-				-0.9
1,723,994	+				+0.8
1,723,994	+				+1.8
1,723,994	+				-0.0
1,723,995	-				+1.1
1,724,044	+				+0.7
1,724,044	+				+0.1
1,724,045	-				-1.7
1,724,045	-				-0.8
1,724,046	+				-0.3
1,724,046	+				+0.4
1,724,046	+				-0.3
1,724,046	+				+2.3
1,724,046	+				+1.9
1,724,047	-				+0.4
1,724,047	-				+0.4
1,724,047	-				+1.1
1,724,063	+				-0.9
1,724,063	+				+1.4
1,724,063	+				+0.4
1,724,063	+				+1.0
1,724,063	+				+1.0
1,724,063	+				+1.1
1,724,063	+				+2.1
1,724,063	+				+0.7
1,724,063	+				+0.3
1,724,063	+				-2.2
1,724,064	-				-0.2
1,724,064	-				-0.9
1,724,064	-				+1.0
1,724,064	-				-1.5
1,724,064	-				-0.3
1,724,072	+				+1.2
1,724,073	-				+0.7
1,724,084	+				+1.4
1,724,084	+				-0.5
1,724,084	+				+1.7
1,724,084	+				-0.9
1,724,084	+				+1.3
1,724,084	+				-0.5
1,724,084	+				+0.8
1,724,084	+				+0.5
1,724,084	+				-2.1
1,724,085	-				-1.9
1,724,085	-				-0.1
1,724,085	-				+0.1
1,724,085	-				-1.9
1,724,085	-				-0.8
1,724,085	-				+0.1
1,724,085	-				+2.1
1,724,085	-				+2.7
1,724,085	-				-1.5
1,724,085	-				+0.7
1,724,085	-				+2.4
1,724,085	-				-0.1
1,724,085	-				+2.7
1,724,127	-				+0.9
1,724,127	-				-0.5
1,724,160	-				-1.7
1,724,236	-		IAI47_08175	0.19	-0.9
1,724,236	-		IAI47_08175	0.19	-0.9
1,724,236	-		IAI47_08175	0.19	+2.7
1,724,336	+		IAI47_08175	0.31	+0.2
1,724,336	+		IAI47_08175	0.31	+0.5
1,724,337	-		IAI47_08175	0.31	-0.1
1,724,337	-		IAI47_08175	0.31	-3.0
1,724,386	+		IAI47_08175	0.38	+1.3
1,724,386	+		IAI47_08175	0.38	+1.3
1,724,386	+		IAI47_08175	0.38	+0.5
1,724,386	+		IAI47_08175	0.38	-2.7
1,724,386	+		IAI47_08175	0.38	+1.1
1,724,386	+		IAI47_08175	0.38	+1.0
1,724,386	+		IAI47_08175	0.38	-0.9
1,724,387	-		IAI47_08175	0.38	-1.2
1,724,387	-		IAI47_08175	0.38	+3.4
1,724,387	-		IAI47_08175	0.38	-0.8
1,724,387	-		IAI47_08175	0.38	+1.8
1,724,411	+		IAI47_08175	0.41	+0.3
1,724,411	+		IAI47_08175	0.41	+0.9
1,724,411	+		IAI47_08175	0.41	-0.5
1,724,411	+		IAI47_08175	0.41	-0.9
1,724,411	+		IAI47_08175	0.41	+0.5
1,724,411	+		IAI47_08175	0.41	-0.7
1,724,412	-		IAI47_08175	0.41	+2.8
1,724,412	-		IAI47_08175	0.41	-1.3
1,724,412	-		IAI47_08175	0.41	+1.0
1,724,436	+		IAI47_08175	0.44	+0.5
1,724,436	+		IAI47_08175	0.44	+1.2
1,724,437	-		IAI47_08175	0.44	+0.0
1,724,437	-		IAI47_08175	0.44	+1.8
1,724,447	+		IAI47_08175	0.45	-1.2
1,724,447	+		IAI47_08175	0.45	+0.5
1,724,448	-		IAI47_08175	0.45	-0.3
1,724,454	+		IAI47_08175	0.46	+0.5
1,724,531	+		IAI47_08175	0.56	+0.1
1,724,545	+		IAI47_08175	0.57	+0.7
1,724,545	+		IAI47_08175	0.57	+0.5
1,724,545	+		IAI47_08175	0.57	+0.9
1,724,546	-		IAI47_08175	0.58	-1.8
1,724,546	-		IAI47_08175	0.58	-1.1
1,724,558	+		IAI47_08175	0.59	-0.2
1,724,559	-		IAI47_08175	0.59	-0.5
1,724,559	-		IAI47_08175	0.59	-0.6
1,724,562	+		IAI47_08175	0.60	-1.8
1,724,562	+		IAI47_08175	0.60	-2.4
1,724,562	+		IAI47_08175	0.60	+1.7
1,724,562	+		IAI47_08175	0.60	+1.3
1,724,562	+		IAI47_08175	0.60	-0.5
1,724,563	-		IAI47_08175	0.60	+1.1
1,724,563	-		IAI47_08175	0.60	+1.1
1,724,606	+		IAI47_08175	0.65	-2.3
1,724,606	+		IAI47_08175	0.65	-2.4
1,724,607	-		IAI47_08175	0.65	+1.0
1,724,607	-		IAI47_08175	0.65	+1.8
1,724,607	-		IAI47_08175	0.65	+1.7
1,724,607	-		IAI47_08175	0.65	+1.3
1,724,610	+		IAI47_08175	0.66	-1.9
1,724,610	+		IAI47_08175	0.66	-0.1
1,724,610	+		IAI47_08175	0.66	-0.7
1,724,610	+		IAI47_08175	0.66	-0.2
1,724,610	+		IAI47_08175	0.66	-0.1
1,724,610	+		IAI47_08175	0.66	+1.8
1,724,610	+		IAI47_08175	0.66	-1.5
1,724,610	+		IAI47_08175	0.66	+0.7
1,724,611	-		IAI47_08175	0.66	+0.5
1,724,611	-		IAI47_08175	0.66	+0.8
1,724,611	-		IAI47_08175	0.66	+0.1
1,724,611	-		IAI47_08175	0.66	+2.1
1,724,611	-		IAI47_08175	0.66	-0.3
1,724,611	-		IAI47_08175	0.66	+0.9
1,724,611	-		IAI47_08175	0.66	+1.1
1,724,611	-		IAI47_08175	0.66	+0.1
1,724,611	-		IAI47_08175	0.66	-0.7
1,724,611	-		IAI47_08175	0.66	+0.1
1,724,611	-		IAI47_08175	0.66	-2.7
1,724,632	-		IAI47_08175	0.68	-1.2
1,724,771	+		IAI47_08175	0.86	+0.1
1,724,771	+		IAI47_08175	0.86	-1.7
1,724,771	+		IAI47_08175	0.86	+1.0
1,724,771	+		IAI47_08175	0.86	+1.9
1,724,772	-		IAI47_08175	0.86	-1.6
1,724,772	-		IAI47_08175	0.86	+1.7
1,724,772	-		IAI47_08175	0.86	+1.2
1,724,772	-		IAI47_08175	0.86	-0.7
1,724,810	+				-1.9
1,724,810	+				-1.9
1,724,811	-				+1.2
1,724,819	+				+0.3
1,724,820	-				-0.9
1,724,883	+				+0.3
1,724,884	-				+1.2
1,724,928	+				-1.4
1,724,932	-				+1.7
1,724,932	-				-0.7
1,724,948	-				+0.9