Strain Fitness in Pantoea sp. MT58 around IAI47_07010

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI47_07005 and IAI47_07010 are separated by 11 nucleotidesIAI47_07010 and IAI47_07015 overlap by 11 nucleotides IAI47_07005: IAI47_07005 - glycosyltransferase family 4 protein, at 1,477,180 to 1,478,304 _07005 IAI47_07010: IAI47_07010 - ABC transporter permease, at 1,478,316 to 1,479,128 _07010 IAI47_07015: IAI47_07015 - ABC transporter ATP-binding protein, at 1,479,118 to 1,480,521 _07015 Position (kb) 1478 1479 1480Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1477.439 kb on + strand, within IAI47_07005at 1477.673 kb on + strand, within IAI47_07005at 1477.695 kb on + strand, within IAI47_07005at 1477.697 kb on + strand, within IAI47_07005at 1477.697 kb on + strand, within IAI47_07005at 1477.697 kb on + strand, within IAI47_07005at 1477.698 kb on - strand, within IAI47_07005at 1477.846 kb on + strand, within IAI47_07005at 1477.846 kb on + strand, within IAI47_07005at 1477.928 kb on + strand, within IAI47_07005at 1478.058 kb on + strand, within IAI47_07005at 1478.166 kb on - strand, within IAI47_07005at 1478.194 kb on + strandat 1478.271 kb on + strandat 1478.395 kb on + strandat 1478.406 kb on + strand, within IAI47_07010at 1478.406 kb on + strand, within IAI47_07010at 1478.812 kb on + strand, within IAI47_07010at 1478.885 kb on + strand, within IAI47_07010at 1478.894 kb on - strandat 1479.150 kb on + strandat 1479.228 kb on + strandat 1479.414 kb on + strand, within IAI47_07015at 1479.414 kb on + strand, within IAI47_07015at 1479.476 kb on + strand, within IAI47_07015at 1479.476 kb on + strand, within IAI47_07015at 1479.476 kb on + strand, within IAI47_07015at 1479.477 kb on - strand, within IAI47_07015at 1479.477 kb on - strand, within IAI47_07015at 1479.478 kb on + strand, within IAI47_07015at 1479.478 kb on + strand, within IAI47_07015at 1479.479 kb on - strand, within IAI47_07015at 1479.525 kb on + strand, within IAI47_07015at 1479.582 kb on + strand, within IAI47_07015at 1479.650 kb on + strand, within IAI47_07015at 1479.650 kb on + strand, within IAI47_07015at 1479.729 kb on + strand, within IAI47_07015at 1479.732 kb on + strand, within IAI47_07015at 1479.732 kb on + strand, within IAI47_07015at 1479.733 kb on - strand, within IAI47_07015at 1479.787 kb on - strand, within IAI47_07015at 1479.806 kb on + strand, within IAI47_07015at 1480.019 kb on + strand, within IAI47_07015

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
remove
1,477,439 + IAI47_07005 0.23 -1.5
1,477,673 + IAI47_07005 0.44 -2.5
1,477,695 + IAI47_07005 0.46 +0.7
1,477,697 + IAI47_07005 0.46 -2.6
1,477,697 + IAI47_07005 0.46 -3.6
1,477,697 + IAI47_07005 0.46 -1.7
1,477,698 - IAI47_07005 0.46 +0.6
1,477,846 + IAI47_07005 0.59 -1.8
1,477,846 + IAI47_07005 0.59 -3.9
1,477,928 + IAI47_07005 0.66 -1.7
1,478,058 + IAI47_07005 0.78 -1.8
1,478,166 - IAI47_07005 0.88 +2.8
1,478,194 + -1.3
1,478,271 + -0.7
1,478,395 + -1.9
1,478,406 + IAI47_07010 0.11 -4.0
1,478,406 + IAI47_07010 0.11 -1.3
1,478,812 + IAI47_07010 0.61 -0.1
1,478,885 + IAI47_07010 0.70 -3.2
1,478,894 - -0.6
1,479,150 + -2.9
1,479,228 + -0.5
1,479,414 + IAI47_07015 0.21 -1.5
1,479,414 + IAI47_07015 0.21 -3.2
1,479,476 + IAI47_07015 0.25 -1.5
1,479,476 + IAI47_07015 0.25 -1.1
1,479,476 + IAI47_07015 0.25 -2.1
1,479,477 - IAI47_07015 0.26 -4.2
1,479,477 - IAI47_07015 0.26 -1.5
1,479,478 + IAI47_07015 0.26 -1.0
1,479,478 + IAI47_07015 0.26 -2.5
1,479,479 - IAI47_07015 0.26 -1.4
1,479,525 + IAI47_07015 0.29 -3.2
1,479,582 + IAI47_07015 0.33 -2.2
1,479,650 + IAI47_07015 0.38 -0.9
1,479,650 + IAI47_07015 0.38 -3.4
1,479,729 + IAI47_07015 0.44 -0.5
1,479,732 + IAI47_07015 0.44 -2.0
1,479,732 + IAI47_07015 0.44 -2.5
1,479,733 - IAI47_07015 0.44 -2.6
1,479,787 - IAI47_07015 0.48 +1.1
1,479,806 + IAI47_07015 0.49 -1.0
1,480,019 + IAI47_07015 0.64 -2.1

Or see this region's nucleotide sequence