Strain Fitness in Pantoea sp. MT58 around IAI47_05230

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,105,043	+				-1.9
1,105,043	+				+0.4
1,105,043	+				-1.0
1,105,043	+				-0.8
1,105,043	+				+1.4
1,105,043	+				-0.8
1,105,043	+				+2.2
1,105,043	+				+1.4
1,105,043	+				+1.2
1,105,044	-				+1.5
1,105,044	-				-0.1
1,105,044	-				+1.3
1,105,044	-				-1.6
1,105,044	-				-1.3
1,105,044	-				-0.8
1,105,045	+				+1.7
1,105,045	+				-1.6
1,105,045	+				+0.1
1,105,045	+				+0.8
1,105,046	-				+1.0
1,105,046	-				-0.2
1,105,046	-				-1.6
1,105,046	-				-0.0
1,105,046	-				-0.9
1,105,046	-				+2.9
1,105,121	+				+1.4
1,105,121	+				-0.7
1,105,121	+				+0.9
1,105,121	+				+0.6
1,105,122	-		IAI47_05225	0.10	-1.2
1,105,122	-		IAI47_05225	0.10	+0.3
1,105,207	+		IAI47_05225	0.18	-1.2
1,105,207	+		IAI47_05225	0.18	+0.9
1,105,207	+		IAI47_05225	0.18	-1.7
1,105,208	-		IAI47_05225	0.18	-1.5
1,105,208	-		IAI47_05225	0.18	-1.0
1,105,274	+		IAI47_05225	0.25	-0.1
1,105,274	+		IAI47_05225	0.25	-2.7
1,105,274	+		IAI47_05225	0.25	-1.1
1,105,275	-		IAI47_05225	0.25	-2.0
1,105,275	-		IAI47_05225	0.25	+0.9
1,105,277	+		IAI47_05225	0.25	-1.1
1,105,277	+		IAI47_05225	0.25	-0.7
1,105,278	-		IAI47_05225	0.25	-2.1
1,105,328	+		IAI47_05225	0.30	-0.0
1,105,328	+		IAI47_05225	0.30	-2.7
1,105,328	+		IAI47_05225	0.30	+0.0
1,105,329	-		IAI47_05225	0.30	-0.2
1,105,329	-		IAI47_05225	0.30	-0.2
1,105,331	-		IAI47_05225	0.30	+0.7
1,105,331	-		IAI47_05225	0.30	+0.8
1,105,331	-		IAI47_05225	0.30	+0.9
1,105,363	+		IAI47_05225	0.34	+0.7
1,105,418	-		IAI47_05225	0.39	+2.7
1,105,418	-		IAI47_05225	0.39	-1.1
1,105,418	-		IAI47_05225	0.39	-0.4
1,105,488	-		IAI47_05225	0.46	+1.9
1,105,488	-		IAI47_05225	0.46	+0.6
1,105,488	-		IAI47_05225	0.46	-0.3
1,105,488	-		IAI47_05225	0.46	+2.1
1,105,489	+		IAI47_05225	0.46	+0.2
1,105,490	-		IAI47_05225	0.46	+1.4
1,105,490	-		IAI47_05225	0.46	-0.5
1,105,490	-		IAI47_05225	0.46	-0.2
1,105,490	-		IAI47_05225	0.46	+1.9
1,105,505	+		IAI47_05225	0.48	-0.7
1,105,506	-		IAI47_05225	0.48	+0.6
1,105,506	-		IAI47_05225	0.48	+1.6
1,105,535	+		IAI47_05225	0.50	-2.2
1,105,535	+		IAI47_05225	0.50	-0.5
1,105,535	+		IAI47_05225	0.50	+1.6
1,105,536	-		IAI47_05225	0.51	-1.8
1,105,536	-		IAI47_05225	0.51	-2.8
1,105,536	-		IAI47_05225	0.51	+1.8
1,105,536	-		IAI47_05225	0.51	-0.6
1,105,642	+		IAI47_05225	0.61	+3.8
1,105,642	+		IAI47_05225	0.61	+0.4
1,105,643	-		IAI47_05225	0.61	-0.0
1,105,655	+		IAI47_05225	0.62	-2.1
1,105,655	+		IAI47_05225	0.62	-1.9
1,105,656	-		IAI47_05225	0.62	-0.2
1,105,656	-		IAI47_05225	0.62	+0.3
1,105,698	-		IAI47_05225	0.66	+1.3
1,105,698	-		IAI47_05225	0.66	-2.0
1,105,712	+		IAI47_05225	0.68	-0.9
1,105,713	-		IAI47_05225	0.68	-1.7
1,105,784	+		IAI47_05225	0.75	-0.9
1,105,785	-		IAI47_05225	0.75	-2.2
1,105,785	-		IAI47_05225	0.75	-0.9
1,105,785	-		IAI47_05225	0.75	-0.3
1,105,789	+		IAI47_05225	0.75	-1.5
1,105,955	+				-0.7
1,105,955	+				-0.7
1,105,956	-				+0.5
1,106,021	+				-2.0
1,106,058	+				-0.5
1,106,058	+				-1.3
1,106,058	+				-0.8
1,106,058	+				+0.5
1,106,059	-				+1.6
1,106,059	-				-2.0
1,106,230	+		IAI47_05230	0.22	-1.8
1,106,257	+		IAI47_05230	0.25	-0.2
1,106,257	+		IAI47_05230	0.25	-1.9
1,106,257	+		IAI47_05230	0.25	-0.5
1,106,257	+		IAI47_05230	0.25	+1.0
1,106,257	+		IAI47_05230	0.25	+2.2
1,106,258	-		IAI47_05230	0.25	+0.5
1,106,258	-		IAI47_05230	0.25	+0.3
1,106,258	-		IAI47_05230	0.25	-1.0
1,106,258	-		IAI47_05230	0.25	-0.4
1,106,258	-		IAI47_05230	0.25	-3.0
1,106,277	+		IAI47_05230	0.27	-0.4
1,106,277	+		IAI47_05230	0.27	+1.8
1,106,278	-		IAI47_05230	0.27	-1.1
1,106,278	-		IAI47_05230	0.27	+0.1
1,106,311	-		IAI47_05230	0.31	-2.0
1,106,439	+		IAI47_05230	0.45	+1.5
1,106,439	+		IAI47_05230	0.45	-1.0
1,106,439	+		IAI47_05230	0.45	+0.6
1,106,440	-		IAI47_05230	0.46	-2.1
1,106,440	-		IAI47_05230	0.46	+0.6
1,106,440	-		IAI47_05230	0.46	-1.1
1,106,528	+		IAI47_05230	0.56	+0.2
1,106,528	+		IAI47_05230	0.56	+1.6
1,106,528	+		IAI47_05230	0.56	+1.2
1,106,528	+		IAI47_05230	0.56	+0.4
1,106,529	-		IAI47_05230	0.56	-0.6
1,106,529	-		IAI47_05230	0.56	-1.0
1,106,529	-		IAI47_05230	0.56	+2.2
1,106,529	-		IAI47_05230	0.56	-2.7
1,106,529	-		IAI47_05230	0.56	-0.4
1,106,539	+		IAI47_05230	0.57	+1.1
1,106,539	+		IAI47_05230	0.57	-0.3
1,106,539	+		IAI47_05230	0.57	+2.8
1,106,539	+		IAI47_05230	0.57	-0.4
1,106,540	-		IAI47_05230	0.57	-0.7
1,106,546	-		IAI47_05230	0.58	+0.7
1,106,571	-		IAI47_05230	0.61	+1.7
1,106,601	+		IAI47_05230	0.64	-2.4
1,106,602	-		IAI47_05230	0.64	-1.0
1,106,602	-		IAI47_05230	0.64	-2.3
1,106,602	-		IAI47_05230	0.64	-1.8
1,106,602	-		IAI47_05230	0.64	+1.4
1,106,657	+		IAI47_05230	0.70	-0.0
1,106,657	+		IAI47_05230	0.70	-1.3
1,106,657	+		IAI47_05230	0.70	-2.0
1,106,657	+		IAI47_05230	0.70	+0.5
1,106,657	+		IAI47_05230	0.70	-2.0
1,106,657	+		IAI47_05230	0.70	-2.2
1,106,658	-		IAI47_05230	0.70	+1.1
1,106,658	-		IAI47_05230	0.70	-3.1
1,106,658	-		IAI47_05230	0.70	+0.2
1,106,658	-		IAI47_05230	0.70	-0.9
1,106,658	-		IAI47_05230	0.70	-1.6
1,106,658	-		IAI47_05230	0.70	-0.7
1,106,658	-		IAI47_05230	0.70	+1.6
1,106,658	-		IAI47_05230	0.70	-0.1
1,106,670	-		IAI47_05230	0.72	+1.1
1,106,670	-		IAI47_05230	0.72	+1.2
1,106,724	+		IAI47_05230	0.78	+2.2
1,106,725	-		IAI47_05230	0.78	-1.1
1,106,749	-		IAI47_05230	0.81	+0.8
1,106,749	-		IAI47_05230	0.81	-2.1
1,106,788	+		IAI47_05230	0.85	+0.2
1,106,788	+		IAI47_05230	0.85	+0.1
1,106,789	-		IAI47_05230	0.85	-1.1
1,106,807	-		IAI47_05230	0.87	+1.0
1,106,807	-		IAI47_05230	0.87	+0.8
1,106,807	-		IAI47_05230	0.87	+1.5
1,106,807	-		IAI47_05230	0.87	+0.2
1,106,807	-		IAI47_05230	0.87	-2.9
1,106,807	-		IAI47_05230	0.87	-1.4
1,106,807	-		IAI47_05230	0.87	+0.1
1,106,881	-				+0.4
1,106,972	+				-2.4
1,106,973	-				-0.6
1,106,973	-				+0.5
1,107,011	+		IAI47_05235	0.12	+0.7
1,107,011	+		IAI47_05235	0.12	-0.9
1,107,012	-		IAI47_05235	0.12	-0.8
1,107,021	+		IAI47_05235	0.13	-0.6
1,107,021	+		IAI47_05235	0.13	+1.3
1,107,021	+		IAI47_05235	0.13	-1.0
1,107,022	-		IAI47_05235	0.13	+1.1
1,107,081	+		IAI47_05235	0.21	+1.3
1,107,081	+		IAI47_05235	0.21	+1.7
1,107,081	+		IAI47_05235	0.21	-0.2
1,107,081	+		IAI47_05235	0.21	-1.5
1,107,081	+		IAI47_05235	0.21	+0.0
1,107,081	+		IAI47_05235	0.21	+1.4
1,107,081	+		IAI47_05235	0.21	+1.4
1,107,081	+		IAI47_05235	0.21	+1.1
1,107,082	-		IAI47_05235	0.21	-1.2
1,107,082	-		IAI47_05235	0.21	-0.1
1,107,082	-		IAI47_05235	0.21	+0.2
1,107,082	-		IAI47_05235	0.21	-0.0
1,107,082	-		IAI47_05235	0.21	+2.8
1,107,082	-		IAI47_05235	0.21	+1.3
1,107,106	+		IAI47_05235	0.24	-0.8
1,107,107	-		IAI47_05235	0.24	-0.1
1,107,107	-		IAI47_05235	0.24	-1.0
1,107,107	-		IAI47_05235	0.24	+1.5
1,107,151	+		IAI47_05235	0.29	-1.6
1,107,169	+		IAI47_05235	0.31	+1.3
1,107,169	+		IAI47_05235	0.31	+0.5
1,107,170	-		IAI47_05235	0.31	-0.4
1,107,200	+		IAI47_05235	0.35	+0.6
1,107,309	-		IAI47_05235	0.49	-1.6
1,107,332	+		IAI47_05235	0.51	+0.1
1,107,333	-		IAI47_05235	0.51	-0.8
1,107,333	-		IAI47_05235	0.51	-0.9
1,107,333	-		IAI47_05235	0.51	+1.7
1,107,333	-		IAI47_05235	0.51	+2.8
1,107,373	-		IAI47_05235	0.56	+0.1
1,107,491	+		IAI47_05235	0.71	-0.9
1,107,491	+		IAI47_05235	0.71	+0.3
1,107,491	+		IAI47_05235	0.71	+0.4
1,107,491	+		IAI47_05235	0.71	+1.0
1,107,491	+		IAI47_05235	0.71	-0.7
1,107,492	-		IAI47_05235	0.71	+0.8
1,107,492	-		IAI47_05235	0.71	-1.4
1,107,492	-		IAI47_05235	0.71	-0.8
1,107,500	+		IAI47_05235	0.72	+1.8
1,107,500	+		IAI47_05235	0.72	+0.8
1,107,501	-		IAI47_05235	0.72	+2.3
1,107,527	+		IAI47_05235	0.75	-0.0
1,107,527	+		IAI47_05235	0.75	-0.8
1,107,527	+		IAI47_05235	0.75	-2.2
1,107,528	-		IAI47_05235	0.75	-2.1
1,107,528	-		IAI47_05235	0.75	-0.0
1,107,528	-		IAI47_05235	0.75	+2.4
1,107,528	-		IAI47_05235	0.75	+1.0
1,107,528	-		IAI47_05235	0.75	+1.1
1,107,585	+		IAI47_05235	0.82	+0.0
1,107,585	+		IAI47_05235	0.82	+1.7
1,107,585	+		IAI47_05235	0.82	+0.3
1,107,585	+		IAI47_05235	0.82	+0.5
1,107,585	+		IAI47_05235	0.82	+2.4
1,107,585	+		IAI47_05235	0.82	+1.2
1,107,585	+		IAI47_05235	0.82	+1.5
1,107,586	-		IAI47_05235	0.82	-1.2
1,107,586	-		IAI47_05235	0.82	+0.3
1,107,586	-		IAI47_05235	0.82	+0.9
1,107,586	-		IAI47_05235	0.82	+0.8
1,107,586	-		IAI47_05235	0.82	+1.4
1,107,586	-		IAI47_05235	0.82	-2.2
1,107,586	-		IAI47_05235	0.82	+1.9
1,107,632	+		IAI47_05235	0.88	-1.8
1,107,632	+		IAI47_05235	0.88	+0.6
1,107,633	-		IAI47_05235	0.88	+1.7
1,107,633	-		IAI47_05235	0.88	+1.0
1,107,633	-		IAI47_05235	0.88	-1.4
1,107,633	-		IAI47_05235	0.88	-0.7
1,107,666	-				-0.3
1,107,674	+				-1.1
1,107,674	+				+0.1
1,107,675	-				+0.2
1,107,675	-				-1.7
1,107,675	-				+0.1
1,107,675	-				+0.1
1,107,675	-				-2.5
1,107,675	-				-1.4
1,107,675	-				-1.9
1,107,724	+				-1.4
1,107,725	-				-0.0
1,107,725	-				+0.8
1,107,772	+				+0.9
1,107,772	+				-0.2
1,107,877	+		IAI47_05240	0.15	-2.4
1,107,878	-		IAI47_05240	0.16	+3.2
1,107,878	-		IAI47_05240	0.16	+2.3
1,107,878	-		IAI47_05240	0.16	-0.3