Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03790 and IAI47_03795 are separated by 169 nucleotides IAI47_03795 and IAI47_03800 are separated by 49 nucleotides
IAI47_03790: IAI47_03790 - MurR/RpiR family transcriptional regulator, at 791,914 to 792,633
_03790
IAI47_03795: IAI47_03795 - hemolysin III family protein, at 792,803 to 793,468
_03795
IAI47_03800: IAI47_03800 - tRNA-modifying protein YgfZ, at 793,518 to 794,504
_03800
Position (kb) 792
793
794 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 791.803 kb on + strand at 791.803 kb on + strand at 791.803 kb on + strand at 791.803 kb on + strand at 791.804 kb on - strand at 791.811 kb on + strand at 791.837 kb on + strand at 791.837 kb on + strand at 791.837 kb on + strand at 791.838 kb on - strand at 791.838 kb on - strand at 791.838 kb on - strand at 791.838 kb on - strand at 791.848 kb on + strand at 791.863 kb on + strand at 791.863 kb on + strand at 791.864 kb on - strand at 791.864 kb on - strand at 791.865 kb on + strand at 791.865 kb on + strand at 791.865 kb on + strand at 791.866 kb on - strand at 791.866 kb on - strand at 791.866 kb on - strand at 791.866 kb on - strand at 791.866 kb on - strand at 791.883 kb on + strand at 791.884 kb on - strand at 791.892 kb on + strand at 791.892 kb on + strand at 791.892 kb on + strand at 791.892 kb on + strand at 791.893 kb on - strand at 791.893 kb on - strand at 791.893 kb on - strand at 791.936 kb on - strand at 791.936 kb on - strand at 791.946 kb on + strand at 791.947 kb on - strand at 791.947 kb on - strand at 791.947 kb on - strand at 791.947 kb on - strand at 791.947 kb on - strand at 791.949 kb on + strand at 791.949 kb on + strand at 791.949 kb on + strand at 791.950 kb on - strand at 791.950 kb on - strand at 791.950 kb on - strand at 791.950 kb on - strand at 791.950 kb on - strand at 791.950 kb on - strand at 791.950 kb on - strand at 791.950 kb on - strand at 791.951 kb on + strand at 791.951 kb on + strand at 791.951 kb on + strand at 791.951 kb on + strand at 791.951 kb on + strand at 791.951 kb on + strand at 791.951 kb on + strand at 791.952 kb on - strand at 791.952 kb on - strand at 791.952 kb on - strand at 791.952 kb on - strand at 791.952 kb on - strand at 791.952 kb on - strand at 791.952 kb on - strand at 791.952 kb on - strand at 791.952 kb on - strand at 792.014 kb on + strand, within IAI47_03790 at 792.014 kb on + strand, within IAI47_03790 at 792.014 kb on + strand, within IAI47_03790 at 792.015 kb on - strand, within IAI47_03790 at 792.015 kb on - strand, within IAI47_03790 at 792.015 kb on - strand, within IAI47_03790 at 792.015 kb on - strand, within IAI47_03790 at 792.015 kb on - strand, within IAI47_03790 at 792.025 kb on - strand, within IAI47_03790 at 792.150 kb on + strand, within IAI47_03790 at 792.150 kb on + strand, within IAI47_03790 at 792.151 kb on - strand, within IAI47_03790 at 792.170 kb on + strand, within IAI47_03790 at 792.170 kb on + strand, within IAI47_03790 at 792.191 kb on + strand, within IAI47_03790 at 792.192 kb on - strand, within IAI47_03790 at 792.192 kb on - strand, within IAI47_03790 at 792.194 kb on + strand, within IAI47_03790 at 792.194 kb on + strand, within IAI47_03790 at 792.194 kb on + strand, within IAI47_03790 at 792.194 kb on + strand, within IAI47_03790 at 792.195 kb on - strand, within IAI47_03790 at 792.223 kb on - strand, within IAI47_03790 at 792.232 kb on - strand, within IAI47_03790 at 792.310 kb on - strand, within IAI47_03790 at 792.354 kb on + strand, within IAI47_03790 at 792.357 kb on + strand, within IAI47_03790 at 792.357 kb on + strand, within IAI47_03790 at 792.357 kb on + strand, within IAI47_03790 at 792.357 kb on + strand, within IAI47_03790 at 792.357 kb on + strand, within IAI47_03790 at 792.357 kb on + strand, within IAI47_03790 at 792.357 kb on + strand, within IAI47_03790 at 792.358 kb on - strand, within IAI47_03790 at 792.358 kb on - strand, within IAI47_03790 at 792.358 kb on - strand, within IAI47_03790 at 792.360 kb on + strand, within IAI47_03790 at 792.361 kb on - strand, within IAI47_03790 at 792.361 kb on - strand, within IAI47_03790 at 792.361 kb on - strand, within IAI47_03790 at 792.361 kb on - strand, within IAI47_03790 at 792.430 kb on + strand, within IAI47_03790 at 792.543 kb on + strand, within IAI47_03790 at 792.543 kb on + strand, within IAI47_03790 at 792.543 kb on + strand, within IAI47_03790 at 792.544 kb on - strand, within IAI47_03790 at 792.544 kb on - strand, within IAI47_03790 at 792.545 kb on + strand, within IAI47_03790 at 792.545 kb on + strand, within IAI47_03790 at 792.545 kb on + strand, within IAI47_03790 at 792.545 kb on + strand, within IAI47_03790 at 792.545 kb on + strand, within IAI47_03790 at 792.545 kb on + strand, within IAI47_03790 at 792.545 kb on + strand, within IAI47_03790 at 792.545 kb on + strand, within IAI47_03790 at 792.545 kb on + strand, within IAI47_03790 at 792.545 kb on + strand, within IAI47_03790 at 792.545 kb on + strand, within IAI47_03790 at 792.545 kb on + strand, within IAI47_03790 at 792.546 kb on - strand, within IAI47_03790 at 792.546 kb on - strand, within IAI47_03790 at 792.546 kb on - strand, within IAI47_03790 at 792.546 kb on - strand, within IAI47_03790 at 792.546 kb on - strand, within IAI47_03790 at 792.546 kb on - strand, within IAI47_03790 at 792.567 kb on + strand at 792.567 kb on + strand at 792.568 kb on - strand at 792.568 kb on - strand at 792.568 kb on - strand at 792.568 kb on - strand at 792.581 kb on + strand at 792.581 kb on + strand at 792.581 kb on + strand at 792.603 kb on + strand at 792.604 kb on - strand at 792.645 kb on + strand at 792.645 kb on + strand at 792.645 kb on + strand at 792.645 kb on + strand at 792.681 kb on + strand at 792.681 kb on + strand at 792.681 kb on + strand at 792.682 kb on - strand at 792.682 kb on - strand at 792.691 kb on - strand at 792.725 kb on + strand at 792.733 kb on + strand at 792.733 kb on + strand at 792.734 kb on - strand at 792.734 kb on - strand at 792.734 kb on - strand at 792.754 kb on + strand at 792.754 kb on + strand at 792.773 kb on + strand at 792.773 kb on + strand at 792.773 kb on + strand at 792.773 kb on + strand at 792.773 kb on + strand at 792.774 kb on - strand at 792.774 kb on - strand at 792.774 kb on - strand at 792.779 kb on + strand at 792.779 kb on + strand at 792.779 kb on + strand at 792.779 kb on + strand at 792.780 kb on - strand at 792.780 kb on - strand at 792.799 kb on + strand at 792.799 kb on + strand at 792.799 kb on + strand at 792.799 kb on + strand at 792.799 kb on + strand at 792.800 kb on - strand at 792.800 kb on - strand at 792.800 kb on - strand at 792.800 kb on - strand at 792.800 kb on - strand at 792.802 kb on + strand at 792.802 kb on + strand at 792.802 kb on + strand at 792.803 kb on - strand at 792.846 kb on - strand at 792.854 kb on - strand at 792.874 kb on + strand, within IAI47_03795 at 792.874 kb on + strand, within IAI47_03795 at 792.875 kb on - strand, within IAI47_03795 at 792.875 kb on - strand, within IAI47_03795 at 792.875 kb on - strand, within IAI47_03795 at 792.875 kb on - strand, within IAI47_03795 at 792.967 kb on + strand, within IAI47_03795 at 792.968 kb on - strand, within IAI47_03795 at 792.968 kb on - strand, within IAI47_03795 at 792.968 kb on - strand, within IAI47_03795 at 792.974 kb on + strand, within IAI47_03795 at 792.974 kb on + strand, within IAI47_03795 at 792.974 kb on + strand, within IAI47_03795 at 792.974 kb on + strand, within IAI47_03795 at 792.974 kb on + strand, within IAI47_03795 at 792.974 kb on + strand, within IAI47_03795 at 792.974 kb on + strand, within IAI47_03795 at 792.975 kb on - strand, within IAI47_03795 at 792.975 kb on - strand, within IAI47_03795 at 792.975 kb on - strand, within IAI47_03795 at 792.975 kb on - strand, within IAI47_03795 at 793.026 kb on - strand, within IAI47_03795 at 793.088 kb on + strand, within IAI47_03795 at 793.088 kb on + strand, within IAI47_03795 at 793.088 kb on + strand, within IAI47_03795 at 793.088 kb on + strand, within IAI47_03795 at 793.088 kb on + strand, within IAI47_03795 at 793.088 kb on + strand, within IAI47_03795 at 793.088 kb on + strand, within IAI47_03795 at 793.088 kb on + strand, within IAI47_03795 at 793.088 kb on + strand, within IAI47_03795 at 793.088 kb on + strand, within IAI47_03795 at 793.089 kb on - strand, within IAI47_03795 at 793.089 kb on - strand, within IAI47_03795 at 793.089 kb on - strand, within IAI47_03795 at 793.089 kb on - strand, within IAI47_03795 at 793.089 kb on - strand, within IAI47_03795 at 793.089 kb on - strand, within IAI47_03795 at 793.089 kb on - strand, within IAI47_03795 at 793.109 kb on + strand, within IAI47_03795 at 793.109 kb on + strand, within IAI47_03795 at 793.109 kb on + strand, within IAI47_03795 at 793.109 kb on + strand, within IAI47_03795 at 793.109 kb on + strand, within IAI47_03795 at 793.109 kb on + strand, within IAI47_03795 at 793.109 kb on + strand, within IAI47_03795 at 793.109 kb on + strand, within IAI47_03795 at 793.109 kb on + strand, within IAI47_03795 at 793.109 kb on + strand, within IAI47_03795 at 793.110 kb on - strand, within IAI47_03795 at 793.110 kb on - strand, within IAI47_03795 at 793.110 kb on - strand, within IAI47_03795 at 793.110 kb on - strand, within IAI47_03795 at 793.110 kb on - strand, within IAI47_03795 at 793.110 kb on - strand, within IAI47_03795 at 793.110 kb on - strand, within IAI47_03795 at 793.110 kb on - strand, within IAI47_03795 at 793.111 kb on + strand, within IAI47_03795 at 793.111 kb on + strand, within IAI47_03795 at 793.111 kb on + strand, within IAI47_03795 at 793.112 kb on - strand, within IAI47_03795 at 793.151 kb on + strand, within IAI47_03795 at 793.151 kb on + strand, within IAI47_03795 at 793.152 kb on - strand, within IAI47_03795 at 793.152 kb on - strand, within IAI47_03795 at 793.152 kb on - strand, within IAI47_03795 at 793.159 kb on - strand, within IAI47_03795 at 793.159 kb on - strand, within IAI47_03795 at 793.192 kb on + strand, within IAI47_03795 at 793.247 kb on + strand, within IAI47_03795 at 793.247 kb on + strand, within IAI47_03795 at 793.247 kb on + strand, within IAI47_03795 at 793.247 kb on + strand, within IAI47_03795 at 793.248 kb on - strand, within IAI47_03795 at 793.248 kb on - strand, within IAI47_03795 at 793.248 kb on - strand, within IAI47_03795 at 793.248 kb on - strand, within IAI47_03795 at 793.283 kb on + strand, within IAI47_03795 at 793.283 kb on + strand, within IAI47_03795 at 793.283 kb on + strand, within IAI47_03795 at 793.283 kb on + strand, within IAI47_03795 at 793.284 kb on - strand, within IAI47_03795 at 793.284 kb on - strand, within IAI47_03795 at 793.284 kb on - strand, within IAI47_03795 at 793.342 kb on + strand, within IAI47_03795 at 793.342 kb on + strand, within IAI47_03795 at 793.342 kb on + strand, within IAI47_03795 at 793.342 kb on + strand, within IAI47_03795 at 793.342 kb on + strand, within IAI47_03795 at 793.343 kb on - strand, within IAI47_03795 at 793.343 kb on - strand, within IAI47_03795 at 793.343 kb on - strand, within IAI47_03795 at 793.346 kb on + strand, within IAI47_03795 at 793.346 kb on + strand, within IAI47_03795 at 793.346 kb on + strand, within IAI47_03795 at 793.346 kb on + strand, within IAI47_03795 at 793.346 kb on + strand, within IAI47_03795 at 793.347 kb on - strand, within IAI47_03795 at 793.367 kb on + strand, within IAI47_03795 at 793.367 kb on + strand, within IAI47_03795 at 793.367 kb on + strand, within IAI47_03795 at 793.368 kb on - strand, within IAI47_03795 at 793.391 kb on - strand, within IAI47_03795 at 793.391 kb on - strand, within IAI47_03795 at 793.391 kb on - strand, within IAI47_03795 at 793.451 kb on + strand at 793.451 kb on + strand at 793.452 kb on - strand at 793.452 kb on - strand at 793.457 kb on + strand at 793.457 kb on + strand at 793.458 kb on - strand at 793.458 kb on - strand at 793.458 kb on - strand at 793.470 kb on + strand at 793.470 kb on + strand at 793.514 kb on + strand at 793.515 kb on - strand at 793.515 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 791,803 + +1.4 791,803 + +0.4 791,803 + -1.1 791,803 + -1.8 791,804 - -0.5 791,811 + +1.8 791,837 + -1.2 791,837 + +0.9 791,837 + +0.9 791,838 - -0.3 791,838 - +1.4 791,838 - +0.0 791,838 - -1.8 791,848 + -2.4 791,863 + +1.5 791,863 + -0.4 791,864 - -0.8 791,864 - +2.2 791,865 + +1.4 791,865 + +1.2 791,865 + +0.8 791,866 - -0.3 791,866 - -0.9 791,866 - +1.2 791,866 - +1.7 791,866 - -1.8 791,883 + -0.4 791,884 - +2.6 791,892 + +0.0 791,892 + -0.5 791,892 + -0.9 791,892 + -1.5 791,893 - -1.1 791,893 - +0.5 791,893 - -2.3 791,936 - +0.2 791,936 - -0.6 791,946 + -2.0 791,947 - -0.8 791,947 - -1.7 791,947 - +1.7 791,947 - +1.7 791,947 - -0.9 791,949 + +0.2 791,949 + +1.6 791,949 + -1.5 791,950 - -1.1 791,950 - +0.6 791,950 - -1.3 791,950 - -0.3 791,950 - -0.2 791,950 - +3.1 791,950 - -1.2 791,950 - +0.8 791,951 + -1.0 791,951 + +0.2 791,951 + +0.2 791,951 + +1.5 791,951 + +2.6 791,951 + -1.2 791,951 + -1.1 791,952 - +0.5 791,952 - -1.3 791,952 - -1.3 791,952 - -0.1 791,952 - +1.8 791,952 - -0.9 791,952 - +1.1 791,952 - +2.2 791,952 - -0.4 792,014 + IAI47_03790 0.14 -1.1 792,014 + IAI47_03790 0.14 -0.3 792,014 + IAI47_03790 0.14 -0.3 792,015 - IAI47_03790 0.14 +0.1 792,015 - IAI47_03790 0.14 +0.9 792,015 - IAI47_03790 0.14 -0.5 792,015 - IAI47_03790 0.14 +2.5 792,015 - IAI47_03790 0.14 -2.4 792,025 - IAI47_03790 0.15 +3.0 792,150 + IAI47_03790 0.33 -1.1 792,150 + IAI47_03790 0.33 -1.7 792,151 - IAI47_03790 0.33 +1.1 792,170 + IAI47_03790 0.36 +1.2 792,170 + IAI47_03790 0.36 +0.1 792,191 + IAI47_03790 0.38 -2.0 792,192 - IAI47_03790 0.39 +1.3 792,192 - IAI47_03790 0.39 +0.8 792,194 + IAI47_03790 0.39 -1.1 792,194 + IAI47_03790 0.39 +0.1 792,194 + IAI47_03790 0.39 -2.2 792,194 + IAI47_03790 0.39 +1.7 792,195 - IAI47_03790 0.39 -0.9 792,223 - IAI47_03790 0.43 +0.0 792,232 - IAI47_03790 0.44 -0.6 792,310 - IAI47_03790 0.55 -1.3 792,354 + IAI47_03790 0.61 -1.9 792,357 + IAI47_03790 0.62 -0.2 792,357 + IAI47_03790 0.62 +2.0 792,357 + IAI47_03790 0.62 -1.0 792,357 + IAI47_03790 0.62 +0.3 792,357 + IAI47_03790 0.62 +0.5 792,357 + IAI47_03790 0.62 -1.4 792,357 + IAI47_03790 0.62 +1.7 792,358 - IAI47_03790 0.62 -1.8 792,358 - IAI47_03790 0.62 -1.7 792,358 - IAI47_03790 0.62 +0.8 792,360 + IAI47_03790 0.62 -0.1 792,361 - IAI47_03790 0.62 -0.8 792,361 - IAI47_03790 0.62 +0.1 792,361 - IAI47_03790 0.62 -3.1 792,361 - IAI47_03790 0.62 -0.4 792,430 + IAI47_03790 0.72 +0.7 792,543 + IAI47_03790 0.87 -1.8 792,543 + IAI47_03790 0.87 -3.2 792,543 + IAI47_03790 0.87 +0.7 792,544 - IAI47_03790 0.88 +0.6 792,544 - IAI47_03790 0.88 +0.8 792,545 + IAI47_03790 0.88 -2.2 792,545 + IAI47_03790 0.88 +0.4 792,545 + IAI47_03790 0.88 +0.8 792,545 + IAI47_03790 0.88 +0.7 792,545 + IAI47_03790 0.88 +0.6 792,545 + IAI47_03790 0.88 -1.5 792,545 + IAI47_03790 0.88 -0.0 792,545 + IAI47_03790 0.88 +0.0 792,545 + IAI47_03790 0.88 +1.4 792,545 + IAI47_03790 0.88 -0.6 792,545 + IAI47_03790 0.88 +1.0 792,545 + IAI47_03790 0.88 +0.2 792,546 - IAI47_03790 0.88 -0.8 792,546 - IAI47_03790 0.88 -1.7 792,546 - IAI47_03790 0.88 +1.1 792,546 - IAI47_03790 0.88 +0.8 792,546 - IAI47_03790 0.88 +1.4 792,546 - IAI47_03790 0.88 +2.2 792,567 + -1.6 792,567 + -0.9 792,568 - +2.4 792,568 - -1.9 792,568 - -1.8 792,568 - +2.1 792,581 + -0.9 792,581 + -2.7 792,581 + +0.1 792,603 + +0.3 792,604 - -0.8 792,645 + -1.6 792,645 + -1.9 792,645 + +0.7 792,645 + +0.4 792,681 + -2.2 792,681 + -0.4 792,681 + +0.6 792,682 - +0.2 792,682 - -0.4 792,691 - -0.9 792,725 + +1.9 792,733 + +0.3 792,733 + +0.7 792,734 - +0.5 792,734 - -2.3 792,734 - +0.8 792,754 + -0.6 792,754 + +0.0 792,773 + -2.6 792,773 + -1.8 792,773 + -0.8 792,773 + +0.5 792,773 + -1.0 792,774 - +0.8 792,774 - +2.0 792,774 - -1.3 792,779 + -0.6 792,779 + -0.9 792,779 + +0.5 792,779 + +1.0 792,780 - +2.2 792,780 - +3.8 792,799 + +0.2 792,799 + -0.2 792,799 + +0.9 792,799 + -0.6 792,799 + +0.7 792,800 - -2.3 792,800 - -2.5 792,800 - +1.9 792,800 - -0.1 792,800 - -1.1 792,802 + -0.9 792,802 + -1.6 792,802 + +0.6 792,803 - -2.0 792,846 - -1.8 792,854 - +2.6 792,874 + IAI47_03795 0.11 +2.5 792,874 + IAI47_03795 0.11 +0.2 792,875 - IAI47_03795 0.11 -0.2 792,875 - IAI47_03795 0.11 -0.5 792,875 - IAI47_03795 0.11 -0.3 792,875 - IAI47_03795 0.11 -2.2 792,967 + IAI47_03795 0.25 -1.3 792,968 - IAI47_03795 0.25 -0.7 792,968 - IAI47_03795 0.25 +0.6 792,968 - IAI47_03795 0.25 -1.1 792,974 + IAI47_03795 0.26 -1.7 792,974 + IAI47_03795 0.26 +1.6 792,974 + IAI47_03795 0.26 -1.8 792,974 + IAI47_03795 0.26 -1.1 792,974 + IAI47_03795 0.26 +1.2 792,974 + IAI47_03795 0.26 -2.2 792,974 + IAI47_03795 0.26 -3.1 792,975 - IAI47_03795 0.26 +0.7 792,975 - IAI47_03795 0.26 -1.4 792,975 - IAI47_03795 0.26 +2.9 792,975 - IAI47_03795 0.26 +1.5 793,026 - IAI47_03795 0.33 -1.3 793,088 + IAI47_03795 0.43 +1.6 793,088 + IAI47_03795 0.43 -1.8 793,088 + IAI47_03795 0.43 -0.7 793,088 + IAI47_03795 0.43 -0.1 793,088 + IAI47_03795 0.43 -1.3 793,088 + IAI47_03795 0.43 -0.0 793,088 + IAI47_03795 0.43 -1.9 793,088 + IAI47_03795 0.43 -1.0 793,088 + IAI47_03795 0.43 -0.6 793,088 + IAI47_03795 0.43 -1.1 793,089 - IAI47_03795 0.43 -1.0 793,089 - IAI47_03795 0.43 -0.6 793,089 - IAI47_03795 0.43 -1.5 793,089 - IAI47_03795 0.43 -1.0 793,089 - IAI47_03795 0.43 +0.2 793,089 - 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Or see this region's nucleotide sequence